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Animesh Ray - Publications

Affiliations: 
Keck Graduate Institute, Claremont, CA, United States 
Area:
Systems biology, cancer, developmental biology, computational biology
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30 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2017 Lee B, Sahoo A, Marchica J, Holzhauser E, Chen X, Li JL, Seki T, Govindarajan SS, Markey FB, Batish M, Lokhande SJ, Zhang S, Ray A, Perera RJ. The long noncoding RNA SPRIGHTLY acts as an intranuclear organizing hub for pre-mRNA molecules. Science Advances. 3: e1602505. PMID 28508063 DOI: 10.1126/Sciadv.1602505  0.349
2016 Patra B, Kon Y, Yadav G, Sevold AW, Frumkin JP, Vallabhajosyula RR, Hintze A, Østman B, Schossau J, Bhan A, Marzolf B, Tamashiro JK, Kaur A, Baliga NS, Grayhack EJ, ... ... Ray A, et al. A genome wide dosage suppressor network reveals genomic robustness. Nucleic Acids Research. PMID 27899637 DOI: 10.1093/Nar/Gkw1148  0.646
2016 Lokhande S, Patra BN, Ray A. A link between chromatin condensation mechanisms and Huntington's disease: connecting the dots. Molecular Biosystems. PMID 27714015 DOI: 10.1039/C6Mb00598E  0.683
2016 Frumkin JP, Patra BN, Sevold A, Ganguly K, Patel C, Yoon S, Schmid MB, Ray A. The interplay between chromosome stability and cell cycle control explored through gene-gene interaction and computational simulation. Nucleic Acids Research. PMID 27530428 DOI: 10.1093/Nar/Gkw715  0.721
2014 An MC, O'Brien RN, Zhang N, Patra BN, De La Cruz M, Ray A, Ellerby LM. Polyglutamine Disease Modeling: Epitope Based Screen for Homologous Recombination using CRISPR/Cas9 System. Plos Currents. 6. PMID 24761311 DOI: 10.1371/Currents.Hd.0242D2E7Ad72225Efa72F6964589369A  0.761
2013 Li JL, Mazar J, Zhong C, Faulkner GJ, Govindarajan SS, Zhang Z, Dinger ME, Meredith G, Adams C, Zhang S, Mattick JS, Ray A, Perera RJ. Genome-wide methylated CpG island profiles of melanoma cells reveal a melanoma coregulation network. Scientific Reports. 3: 2962. PMID 24129253 DOI: 10.1038/Srep02962  0.358
2012 Perera RJ, Ray A. Epigenetic regulation of miRNA genes and their role in human melanomas. Epigenomics. 4: 81-90. PMID 22332660 DOI: 10.2217/Epi.11.114  0.356
2008 Paladugu SR, Zhao S, Ray A, Raval A. Mining protein networks for synthetic genetic interactions. Bmc Bioinformatics. 9: 426. PMID 18844977 DOI: 10.1186/1471-2105-9-426  0.757
2007 Langer M, Sniderhan LF, Grossniklaus U, Ray A. Transposon excision from an atypical site: a mechanism of evolution of novel transposable elements. Plos One. 2: e965. PMID 17912344 DOI: 10.1371/Journal.Pone.0000965  0.78
2007 Perera RJ, Ray A. MicroRNAs in the search for understanding human diseases. Biodrugs : Clinical Immunotherapeutics, Biopharmaceuticals and Gene Therapy. 21: 97-104. PMID 17402793 DOI: 10.2165/00063030-200721020-00004  0.328
2007 Chickarmane V, Ray A, Sauro HM, Nadim A. A model for p53 dynamics triggered by DNA damage Siam Journal On Applied Dynamical Systems. 6: 61-78. DOI: 10.1137/060653925  0.302
2006 Baitaluk M, Sedova M, Ray A, Gupta A. BiologicalNetworks: visualization and analysis tool for systems biology. Nucleic Acids Research. 34: W466-71. PMID 16845051 DOI: 10.1093/Nar/Gkl308  0.369
2006 Baitaluk M, Qian X, Godbole S, Raval A, Ray A, Gupta A. PathSys: integrating molecular interaction graphs for systems biology. Bmc Bioinformatics. 7: 55. PMID 16464251 DOI: 10.1186/1471-2105-7-55  0.728
2005 Mlotshwa S, Schauer SE, Smith TH, Mallory AC, Herr JM, Roth B, Merchant DS, Ray A, Bowman LH, Vance VB. Ectopic DICER-LIKE1 expression in P1/HC-Pro Arabidopsis rescues phenotypic anomalies but not defects in microRNA and silencing pathways. The Plant Cell. 17: 2873-85. PMID 16214897 DOI: 10.1105/Tpc.105.036608  0.753
2005 Ray A. Plant genetics: RNA cache or genome trash? Nature. 437: E1-2; discussion E2. PMID 16136081 DOI: 10.1038/Nature04063  0.391
2003 Papp I, Mette MF, Aufsatz W, Daxinger L, Schauer SE, Ray A, Van Der Winden J, Matzke M, Matzke AJM. Evidence for nuclear processing of plant micro RNA and short interfering RNA precursors Plant Physiology. 132: 1382-1390. PMID 12857820 DOI: 10.1104/Pp.103.021980  0.769
2002 Schauer SE, Jacobsen SE, Meinke DW, Ray A. DICER-LIKE1: blind men and elephants in Arabidopsis development. Trends in Plant Science. 7: 487-91. PMID 12417148 DOI: 10.1016/S1360-1385(02)02355-5  0.789
2002 Ray A, Langer M. Homologous recombination: ends as the means. Trends in Plant Science. 7: 435-40. PMID 12399177 DOI: 10.1016/S1360-1385(02)02327-0  0.788
2002 Golden TA, Schauer SE, Lang JD, Pien S, Mushegian AR, Grossniklaus U, Meinke DW, Ray A. SHORT INTEGUMENTS1/SUSPENSOR1/CARPEL FACTORY, a Dicer homolog, is a maternal effect gene required for embryo development in Arabidopsis. Plant Physiology. 130: 808-22. PMID 12376646 DOI: 10.1104/Pp.003491  0.752
1998 Ray A. New paradigms in plant embryogenesis: maternal control comes in different flavors Trends in Plant Science. 3: 325-327. DOI: 10.1016/S1360-1385(98)01293-X  0.391
1996 Chiurazzi M, Ray A, Viret JF, Perera R, Wang XH, Lloyd AM, Signer ER. Enhancement of somatic intrachromosomal homologous recombination in Arabidopsis by the HO endonuclease. The Plant Cell. 8: 2057-66. PMID 8953770 DOI: 10.1105/Tpc.8.11.2057  0.658
1996 Ray S, Golden T, Ray A. Maternal Effects of theshort integumentMutation on Embryo Development inArabidopsis Developmental Biology. 180: 365-369. PMID 8948599 DOI: 10.1006/Dbio.1996.0309  0.312
1994 Ray A, Robinson-Beers K, Ray S, Baker SC, Lang JD, Preuss D, Milligan SB, Gasser CS. Arabidopsis floral homeotic gene BELL (BEL1) controls ovule development through negative regulation of AGAMOUS gene (AG). Proceedings of the National Academy of Sciences of the United States of America. 91: 5761-5. PMID 7912435 DOI: 10.1073/Pnas.91.13.5761  0.366
1989 Ray A, Machin N, Stahl FW. A DNA double chain break stimulates triparental recombination in Saccharomyces cerevisiae. Proceedings of the National Academy of Sciences of the United States of America. 86: 6225-9. PMID 2668958 DOI: 10.1073/Pnas.86.16.6225  0.56
1988 Ray A, Siddiqi I, Kolodkin AL, Stahl FW. Intra-chromosomal gene conversion induced by a DNA double-strand break in Saccharomyces cerevisiae. Journal of Molecular Biology. 201: 247-60. PMID 3047399 DOI: 10.1016/0022-2836(88)90136-2  0.612
1986 Ray A, Cheah K, Skurray R. An F-derived conjugative cosmid: Analysis of tra polypeptides in cosmid-infected cells Plasmid. 16: 90-100. PMID 2944151 DOI: 10.1016/0147-619X(86)90067-3  0.329
1986 Loh SM, Ray A, Cram DS, O'Gorman LE, Skurray RA. Location of a second partitioning region (ParL) on the F plasmid Fems Microbiology Letters. 37: 179-182. DOI: 10.1111/J.1574-6968.1986.Tb01789.X  0.575
1984 Cram D, Ray A, Skurray R. Molecular analysis of F plasmid pif region specifying abortive infection of T7 phage Molecular Genetics and Genomics. 197: 137-142. PMID 6096670 DOI: 10.1007/Bf00327934  0.317
1984 Ray A, Skurray R. Stabilization of the cloning vector pACYC184 by insertion of F plasmid leading region sequences Plasmid. 11: 272-275. PMID 6087396 DOI: 10.1016/0147-619X(84)90036-2  0.326
1983 Ray A, Skurray R. Cloning and polypeptide analysis of the leading region in F plasmid DNA transfer Plasmid. 9: 262-272. PMID 6306705 DOI: 10.1016/0147-619X(83)90004-5  0.312
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