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Leping Li - Publications

Affiliations: 
1996-1998 Biostatistics NIEHS/NIH, Durham, NC, United States 
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33 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Li L, Perera L, Varghese SA, Shiloh-Malawsky Y, Hunter SE, Sneddon TP, Powell CM, Matera AG, Fan Z. A homozygous missense variant in the YG box domain in an individual with severe spinal muscular atrophy: a case report and variant characterization. Frontiers in Cellular Neuroscience. 17: 1259380. PMID 37841286 DOI: 10.3389/fncel.2023.1259380  0.434
2019 Kang K, Meng Q, Shats I, Umbach DM, Li M, Li Y, Li X, Li L. CDSeq: A novel complete deconvolution method for dissecting heterogeneous samples using gene expression data. Plos Computational Biology. 15: e1007510. PMID 31790389 DOI: 10.1371/Journal.Pcbi.1007510  0.304
2018 Nguyen TT, Grimm SA, Bushel PR, Li J, Li Y, Bennett BD, Lavender CA, Ward JM, Fargo DC, Anderson CW, Li L, Resnick MA, Menendez D. Revealing a human p53 universe. Nucleic Acids Research. PMID 30107566 DOI: 10.1093/Nar/Gky720  0.32
2017 Li Y, Kang K, Krahn JM, Croutwater N, Lee K, Umbach DM, Li L. A comprehensive genomic pan-cancer classification using The Cancer Genome Atlas gene expression data. Bmc Genomics. 18: 508. PMID 28673244 DOI: 10.1186/S12864-017-3906-0  0.302
2017 Li Y, Umbach DM, Li L. Abstract A46: A comprehensive genomic pan-cancer analysis comparing males and females using The Cancer Genome Atlas gene expression data Clinical Cancer Research. 23. DOI: 10.1158/1557-3265.Pmccavuln16-A46  0.312
2015 Wells ML, Washington OL, Hicks SN, Nobile CJ, Hartooni N, Wilson GM, Zucconi BE, Huang W, Li L, Fargo DC, Blackshear PJ. Post-transcriptional regulation of transcript abundance by a conserved member of the tristetraprolin family in Candida albicans. Molecular Microbiology. 95: 1036-53. PMID 25524641 DOI: 10.1111/Mmi.12913  0.313
2015 Li Y, Krahn J, Li L. Abstract A17: Assessing the similarity and dissimilarity between primary and metastatic melanoma using gene expression data Cancer Research. 75. DOI: 10.1158/1538-7445.Mel2014-A17  0.325
2014 Choi YJ, Lai WS, Fedic R, Stumpo DJ, Huang W, Li L, Perera L, Brewer BY, Wilson GM, Mason JM, Blackshear PJ. The Drosophila Tis11 protein and its effects on mRNA expression in flies. The Journal of Biological Chemistry. 289: 35042-60. PMID 25342740 DOI: 10.1074/Jbc.M114.593491  0.537
2014 Niu L, Huang W, Umbach DM, Li L. IUTA: a tool for effectively detecting differential isoform usage from RNA-Seq data. Bmc Genomics. 15: 862. PMID 25283306 DOI: 10.1186/1471-2164-15-862  0.317
2014 Hewitt SC, Li L, Grimm SA, Winuthayanon W, Hamilton KJ, Pockette B, Rubel CA, Pedersen LC, Fargo D, Lanz RB, DeMayo FJ, Schütz G, Korach KS. Novel DNA motif binding activity observed in vivo with an estrogen receptor α mutant mouse. Molecular Endocrinology (Baltimore, Md.). 28: 899-911. PMID 24713037 DOI: 10.1210/Me.2014-1051  0.325
2012 Wells ML, Huang W, Li L, Gerrish KE, Fargo DC, Ozsolak F, Blackshear PJ. Posttranscriptional regulation of cell-cell interaction protein-encoding transcripts by Zfs1p in Schizosaccharomyces pombe. Molecular and Cellular Biology. 32: 4206-14. PMID 22907753 DOI: 10.1128/Mcb.00325-12  0.321
2008 Lin R, Dai S, Irwin RD, Heinloth AN, Boorman GA, Li L. Gene set enrichment analysis for non-monotone association and multiple experimental categories. Bmc Bioinformatics. 9: 481. PMID 19014579 DOI: 10.1186/1471-2105-9-481  0.314
2007 Li L, Liang Y, Bass RL. GAPWM: a genetic algorithm method for optimizing a position weight matrix. Bioinformatics (Oxford, England). 23: 1188-94. PMID 17341493 DOI: 10.1093/Bioinformatics/Btm080  0.31
2006 Zhang D, Stumpo DJ, Graves JP, DeGraff LM, Grissom SF, Collins JB, Li L, Zeldin DC, Blackshear PJ. Identification of potential target genes for RFX4_v3, a transcription factor critical for brain development. Journal of Neurochemistry. 98: 860-75. PMID 16893423 DOI: 10.1111/J.1471-4159.2006.03930.X  0.321
2006 Pedersen LG, Bartolotti L, Li L. Deuterium and its role in the machinery of evolution. Journal of Theoretical Biology. 238: 914-8. PMID 16098990 DOI: 10.1016/J.Jtbi.2005.07.002  0.463
2004 Liu D, Umbach DM, Peddada SD, Li L, Crockett PW, Weinberg CR. A random-periods model for expression of cell-cycle genes. Proceedings of the National Academy of Sciences of the United States of America. 101: 7240-5. PMID 15123814 DOI: 10.1073/Pnas.0402285101  0.311
2003 Cable PL, Wilson CA, Calzone FJ, Rauscher FJ, Scully R, Livingston DM, Li L, Blackwell CB, Futreal PA, Afshari CA. Novel consensus DNA-binding sequence for BRCA1 protein complexes Molecular Carcinogenesis. 38: 85-96. PMID 14502648 DOI: 10.1002/Mc.10148  0.338
2003 Peddada SD, Lobenhofer EK, Li L, Afshari CA, Weinberg CR, Umbach DM. Gene selection and clustering for time-course and dose-response microarray experiments using order-restricted inference. Bioinformatics (Oxford, England). 19: 834-41. PMID 12724293 DOI: 10.1093/Bioinformatics/Btg093  0.301
2003 Kakuta Y, Li L, Pedersen LC, Pedersen LG, Negishi M. Heparan sulphate N-sulphotransferase activity: reaction mechanism and substrate recognition. Biochemical Society Transactions. 31: 331-4. PMID 12653630 DOI: 10.1042/Bst0310331  0.485
2002 Lobenhofer EK, Bennett L, Cable PL, Li L, Bushel PR, Afshari CA. Regulation of DNA replication fork genes by 17beta-estradiol. Molecular Endocrinology (Baltimore, Md.). 16: 1215-29. PMID 12040010 DOI: 10.1210/Mend.16.6.0858  0.318
2002 Hamadeh HK, Bushel PR, Jayadev S, DiSorbo O, Bennett L, Li L, Tennant R, Stoll R, Barrett JC, Paules RS, Blanchard K, Afshari CA. Prediction of compound signature using high density gene expression profiling. Toxicological Sciences : An Official Journal of the Society of Toxicology. 67: 232-40. PMID 12011482 DOI: 10.1093/Toxsci/67.2.232  0.306
2001 Li L, Darden TA, Weinberg CR, Levine AJ, Pedersen LG. Gene assessment and sample classification for gene expression data using a genetic algorithm/k-nearest neighbor method. Combinatorial Chemistry & High Throughput Screening. 4: 727-39. PMID 11894805 DOI: 10.2174/1386207013330733  0.524
2001 Li L, Weinberg CR, Darden TA, Pedersen LG. Gene selection for sample classification based on gene expression data: study of sensitivity to choice of parameters of the GA/KNN method. Bioinformatics (Oxford, England). 17: 1131-42. PMID 11751221 DOI: 10.1093/Bioinformatics/17.12.1131  0.51
2000 Bevan DR, Li L, Pedersen LG, Darden TA. Molecular dynamics simulations of the d(CCAACGTTGG)(2) decamer: influence of the crystal environment. Biophysical Journal. 78: 668-82. PMID 10653780 DOI: 10.1016/S0006-3495(00)76625-2  0.482
2000 Li L, Pedersen LG, Beard WA, Bebenek K, Wilson SH, Kunkel TA, Darden TA. A Molecular Dynamics Model of HIV-1 Reverse Transcriptase Complexed with DNA: Comparison with Experimental Structures Journal of Molecular Modeling. 6: 575-586. DOI: 10.1007/S0089400060575  0.485
1999 Darden T, Perera L, Li L, Lee P. New tricks for modelers from the crystallography toolkit: The particle mesh Ewald algorithm and its use in nucleic acid simulations Structure. 7: R55-R60. PMID 10368306 DOI: 10.1016/S0969-2126(99)80033-1  0.463
1999 Li L, Darden TA, Bartolotti L, Kominos D, Pedersen LG. An atomic model for the pleated beta-sheet structure of Abeta amyloid protofilaments. Biophysical Journal. 76: 2871-8. PMID 10354415 DOI: 10.1016/S0006-3495(99)77442-4  0.458
1998 Beard WA, Bebenek K, Darden TA, Li L, Prasad R, Kunkel TA, Wilson SH. Vertical-scanning mutagenesis of a critical tryptophan in the minor groove binding track of HIV-1 reverse transcriptase. Molecular nature of polymerase-nucleic acid interactions. The Journal of Biological Chemistry. 273: 30435-42. PMID 9804810 DOI: 10.1074/Jbc.273.46.30435  0.303
1997 Rigby AC, Baleja JD, Li L, Pedersen LG, Furie BC, Furie B. Role of gamma-carboxyglutamic acid in the calcium-induced structural transition of conantokin G, a conotoxin from the marine snail Conus geographus. Biochemistry. 36: 15677-84. PMID 9398296 DOI: 10.1021/Bi9718550  0.493
1997 Li L, Darden TA, Freedman SJ, Furie BC, Furie B, Baleja JD, Smith H, Hiskey RG, Pedersen LG. Refinement of the NMR solution structure of the gamma-carboxyglutamic acid domain of coagulation factor IX using molecular dynamics simulation with initial Ca2+ positions determined by a genetic algorithm. Biochemistry. 36: 2132-8. PMID 9047312 DOI: 10.1021/Bi962250R  0.491
1996 Wolberg AS, Li L, Cheung WF, Hamaguchi N, Pedersen LG, Stafford DW. Characterization of gamma-carboxyglutamic acid residue 21 of human factor IX. Biochemistry. 35: 10321-7. PMID 8756687 DOI: 10.1021/Bi960502I  0.509
1996 Li L, Darden T, Hiskey R, Pedersen L. Homology Modeling and Molecular Dynamics Simulations of the Gla Domains of Human Coagulation Factor IX and Its G[12]A Mutant The Journal of Physical Chemistry. 100: 2475-2479. DOI: 10.1021/Jp952190J  0.509
1984 Li L, Porter RN, Johnson PM. Pressure narrowing of ac Stark-broadened multiphoton spectra Physical Review Letters. 53: 1336-1339. DOI: 10.1103/Physrevlett.53.1336  0.42
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