| Year |
Citation |
Score |
| 2023 |
Li Y, Yao J, Sang H, Wang Q, Su L, Zhao X, Xia Z, Wang F, Wang K, Lou D, Wang G, Waterhouse RM, Wang H, Luo S, Sun C. Pan-genome analysis highlights the role of structural variation in the evolution and environmental adaptation of Asian honeybees. Molecular Ecology Resources. PMID 37996991 DOI: 10.1111/1755-0998.13905 |
0.56 |
|
| 2023 |
Mazzoni CJ, Ciofi C, Waterhouse RM. Biodiversity: an atlas of European reference genomes. Nature. 619: 252. PMID 37433931 DOI: 10.1038/d41586-023-02229-w |
0.514 |
|
| 2023 |
Larivière D, Abueg L, Brajuka N, Gallardo-Alba C, Grüning B, Ko BJ, Ostrovsky A, Palmada-Flores M, Pickett BD, Rabbani K, Balacco JR, Chaisson M, Cheng H, Collins J, Denisova A, ... ... Waterhouse RM, et al. Scalable, accessible, and reproducible reference genome assembly and evaluation in Galaxy. Biorxiv : the Preprint Server For Biology. PMID 37425881 DOI: 10.1101/2023.06.28.546576 |
0.454 |
|
| 2023 |
Labbé F, Abdeladhim M, Abrudan J, Araki AS, Araujo RN, Arensburger P, Benoit JB, Brazil RP, Bruno RV, Bueno da Silva Rivas G, Carvalho de Abreu V, Charamis J, Coutinho-Abreu IV, da Costa-Latgé SG, Darby A, ... ... Waterhouse RM, et al. Genomic analysis of two phlebotomine sand fly vectors of leishmania from the new and old World. Plos Neglected Tropical Diseases. 17: e0010862. PMID 37043542 DOI: 10.1371/journal.pntd.0010862 |
0.487 |
|
| 2023 |
Theissinger K, Fernandes C, Formenti G, Bista I, Berg PR, Bleidorn C, Bombarely A, Crottini A, Gallo GR, Godoy JA, Jentoft S, Malukiewicz J, Mouton A, Oomen RA, Paez S, ... ... Waterhouse RM, et al. How genomics can help biodiversity conservation. Trends in Genetics : Tig. PMID 36801111 DOI: 10.1016/j.tig.2023.01.005 |
0.507 |
|
| 2022 |
Reijnders MJMF, Waterhouse RM. CrowdGO: Machine learning and semantic similarity guided consensus Gene Ontology annotation. Plos Computational Biology. 18: e1010075. PMID 35560159 DOI: 10.1371/journal.pcbi.1010075 |
0.336 |
|
| 2022 |
Lukyanchikova V, Nuriddinov M, Belokopytova P, Taskina A, Liang J, Reijnders MJMF, Ruzzante L, Feron R, Waterhouse RM, Wu Y, Mao C, Tu Z, Sharakhov IV, Fishman V. Anopheles mosquitoes reveal new principles of 3D genome organization in insects. Nature Communications. 13: 1960. PMID 35413948 DOI: 10.1038/s41467-022-29599-5 |
0.511 |
|
| 2022 |
Feron R, Waterhouse RM. Exploring new genomic territories with emerging model insects. Current Opinion in Insect Science. 51: 100902. PMID 35301165 DOI: 10.1016/j.cois.2022.100902 |
0.5 |
|
| 2022 |
Feron R, Waterhouse RM. Assessing species coverage and assembly quality of rapidly accumulating sequenced genomes. Gigascience. 11. PMID 35217859 DOI: 10.1093/gigascience/giac006 |
0.515 |
|
| 2022 |
Zancolli G, Reijnders M, Waterhouse RM, Robinson-Rechavi M. Convergent evolution of venom gland transcriptomes across Metazoa. Proceedings of the National Academy of Sciences of the United States of America. 119. PMID 34983844 DOI: 10.1073/pnas.2111392119 |
0.325 |
|
| 2021 |
Ruzzante L, Feron R, Reijnders MJMF, Thiébaut A, Waterhouse RM. Functional constraints on insect immune system components govern their evolutionary trajectories. Molecular Biology and Evolution. PMID 34893861 DOI: 10.1093/molbev/msab352 |
0.528 |
|
| 2021 |
Olafson PU, Aksoy S, Attardo GM, Buckmeier G, Chen X, Coates CJ, Davis M, Dykema J, Emrich SJ, Friedrich M, Holmes CJ, Ioannidis P, Jansen EN, Jennings EC, Lawson D, ... ... Waterhouse RM, et al. Publisher Correction: The genome of the stable fly, Stomoxys calcitrans, reveals potential mechanisms underlying reproduction, host interactions, and novel targets for pest control. Bmc Biology. 19: 150. PMID 34325695 DOI: 10.1186/s12915-021-01098-x |
0.384 |
|
| 2021 |
Makunin A, Korlević P, Park N, Goodwin S, Waterhouse RM, von Wyschetzki K, Jacob CG, Davies R, Kwiatkowski D, St Laurent B, Ayala D, Lawniczak MKN. A targeted amplicon sequencing panel to simultaneously identify mosquito species and Plasmodium presence across the entire Anopheles genus. Molecular Ecology Resources. PMID 34053186 DOI: 10.1111/1755-0998.13436 |
0.431 |
|
| 2021 |
Sun C, Huang J, Wang Y, Zhao X, Su L, Thomas GWC, Zhao M, Zhang X, Jungreis I, Kellis M, Vicario S, Sharakhov IV, Bondarenko SM, Hasselmann M, Kim CN, ... ... Waterhouse RM, et al. Erratum to: Genus-wide characterization of bumblebee genomes provides insights into their evolution and variation in ecological and behavioral traits. Molecular Biology and Evolution. PMID 34015138 DOI: 10.1093/molbev/msab100 |
0.6 |
|
| 2021 |
Feron R, Pan Q, Wen M, Imarazene B, Jouanno E, Anderson J, Herpin A, Journot L, Parrinello H, Klopp C, Kottler VA, Roco AS, Du K, Kneitz S, Adolfi M, ... ... Waterhouse RM, et al. RADSex: a computational workflow to study sex determination using Restriction Site-Associated DNA Sequencing data. Molecular Ecology Resources. PMID 33590960 DOI: 10.1111/1755-0998.13360 |
0.318 |
|
| 2020 |
Rotenberg D, Baumann AA, Ben-Mahmoud S, Christiaens O, Dermauw W, Ioannidis P, Jacobs CGC, Vargas Jentzsch IM, Oliver JE, Poelchau MF, Rajarapu SP, Schneweis DJ, Snoeck S, Taning CNT, Wei D, ... ... Waterhouse RM, et al. Correction to: Genome-enabled insights into the biology of thrips as crop pests. Bmc Biology. 18: 169. PMID 33198778 DOI: 10.1186/s12915-020-00915-z |
0.416 |
|
| 2020 |
Rotenberg D, Baumann AA, Ben-Mahmoud S, Christiaens O, Dermauw W, Ioannidis P, Jacobs CGC, Vargas Jentzsch IM, Oliver JE, Poelchau MF, Rajarapu SP, Schneweis DJ, Snoeck S, Taning CNT, Wei D, ... ... Waterhouse RM, et al. Genome-enabled insights into the biology of thrips as crop pests. Bmc Biology. 18: 142. PMID 33070780 DOI: 10.1186/s12915-020-00862-9 |
0.426 |
|
| 2020 |
Sun C, Huang J, Wang Y, Zhao X, Su L, Thomas GWC, Zhao M, Zhang X, Jungreis I, Kellis M, Vicario S, Sharakhov IV, Bondarenko SM, Hasselmann M, Kim CN, ... ... Waterhouse RM, et al. Genus-wide characterization of bumblebee genomes provides insights into their evolution and variation in ecological and behavioral traits. Molecular Biology and Evolution. PMID 32946576 DOI: 10.1093/Molbev/Msaa240 |
0.668 |
|
| 2020 |
Kapheim KM, Jones BM, Pan H, Li C, Harpur BA, Kent CF, Zayed A, Ioannidis P, Waterhouse RM, Kingwell C, Stolle E, Avalos A, Zhang G, McMillan WO, Wcislo WT. Developmental plasticity shapes social traits and selection in a facultatively eusocial bee. Proceedings of the National Academy of Sciences of the United States of America. PMID 32471944 DOI: 10.1073/Pnas.2000344117 |
0.362 |
|
| 2020 |
Oeyen JP, Baa-Puyoulet P, Benoit JB, Beukeboom LW, Bornberg-Bauer E, Buttstedt A, Calevro F, Cash EI, Chao H, Charles H, Chen MM, Childers C, Cridge AG, Dearden P, Dinh H, ... ... Waterhouse RM, et al. Sawfly genomes reveal evolutionary acquisitions that fostered the mega-radiation of parasitoid and eusocial Hymenoptera. Genome Biology and Evolution. PMID 32442304 DOI: 10.1093/Gbe/Evaa106 |
0.574 |
|
| 2020 |
Sparks ME, Bansal R, Benoit JB, Blackburn MB, Chao H, Chen M, Cheng S, Childers C, Dinh H, Doddapaneni HV, Dugan S, Elpidina EN, Farrow DW, Friedrich M, Gibbs RA, ... ... Waterhouse RM, et al. Brown marmorated stink bug, Halyomorpha halys (Stål), genome: putative underpinnings of polyphagy, insecticide resistance potential and biology of a top worldwide pest. Bmc Genomics. 21: 227. PMID 32171258 DOI: 10.1186/S12864-020-6510-7 |
0.452 |
|
| 2020 |
Thomas GWC, Dohmen E, Hughes DST, Murali SC, Poelchau M, Glastad K, Anstead CA, Ayoub NA, Batterham P, Bellair M, Binford GJ, Chao H, Chen YH, Childers C, Dinh H, ... ... Waterhouse RM, et al. Gene content evolution in the arthropods. Genome Biology. 21: 15. PMID 31969194 DOI: 10.1186/S13059-019-1925-7 |
0.569 |
|
| 2020 |
Herndon N, Shelton J, Gerischer L, Ioannidis P, Ninova M, Dönitz J, Waterhouse RM, Liang C, Damm C, Siemanowski J, Kitzmann P, Ulrich J, Dippel S, Oberhofer G, Hu Y, et al. Enhanced genome assembly and a new official gene set for Tribolium castaneum. Bmc Genomics. 21: 47. PMID 31937263 DOI: 10.1186/S12864-019-6394-6 |
0.546 |
|
| 2020 |
Waterhouse RM, Aganezov S, Anselmetti Y, Lee J, Ruzzante L, Reijnders MJMF, Feron R, Bérard S, George P, Hahn MW, Howell PI, Kamali M, Koren S, Lawson D, Maslen G, et al. Evolutionary superscaffolding and chromosome anchoring to improve Anopheles genome assemblies. Bmc Biology. 18: 1. PMID 31898513 DOI: 10.1186/S12915-019-0728-3 |
0.473 |
|
| 2019 |
Kapheim KM, Pan H, Li C, Blatti C, Harpur BA, Ioannidis P, Jones BM, Kent CF, Ruzzante L, Sloofman L, Stolle E, Waterhouse RM, Zayed A, Zhang G, Wcislo WT. Draft Genome Assembly and Population Genetics of an Agricultural Pollinator, the Solitary Alkali Bee (Halictidae: Nomia melanderi). G3 (Bethesda, Md.). 9: 625-634. PMID 33575757 DOI: 10.1534/g3.118.200865 |
0.545 |
|
| 2019 |
Manni M, Simao FA, Robertson HM, Gabaglio MA, Waterhouse RM, Misof B, Niehuis O, Szucsich NU, Zdobnov EM. The genome of the blind soil-dwelling and ancestrally wingless dipluran Campodea augens, a key reference hexapod for studying the emergence of insect innovations. Genome Biology and Evolution. PMID 31778187 DOI: 10.1093/Gbe/Evz260 |
0.577 |
|
| 2019 |
Mudge JM, Jungreis I, Hunt T, Gonzalez JM, Wright JC, Kay M, Davidson C, Fitzgerald S, Seal R, Tweedie S, He L, Waterhouse RM, Li Y, Bruford E, Choudhary JS, et al. Discovery of high-confidence human protein-coding genes and exons by whole-genome PhyloCSF helps elucidate 118 GWAS loci. Genome Research. PMID 31537640 DOI: 10.1101/Gr.246462.118 |
0.578 |
|
| 2019 |
Attardo GM, Abd-Alla AMM, Acosta-Serrano A, Allen JE, Bateta R, Benoit JB, Bourtzis K, Caers J, Caljon G, Christensen MB, Farrow DW, Friedrich M, Hua-Van A, Jennings EC, Larkin DM, ... ... Waterhouse RM, et al. Comparative genomic analysis of six Glossina genomes, vectors of African trypanosomes. Genome Biology. 20: 187. PMID 31477173 DOI: 10.1186/S13059-019-1768-2 |
0.329 |
|
| 2019 |
Seppey M, Ioannidis P, Emerson BC, Pitteloud C, Robinson-Rechavi M, Roux J, Escalona HE, McKenna DD, Misof B, Shin S, Zhou X, Waterhouse RM, Alvarez N. Genomic signatures accompanying the dietary shift to phytophagy in polyphagan beetles. Genome Biology. 20: 98. PMID 31101123 DOI: 10.1186/S13059-019-1704-5 |
0.407 |
|
| 2019 |
Panfilio KA, Vargas Jentzsch IM, Benoit JB, Erezyilmaz D, Suzuki Y, Colella S, Robertson HM, Poelchau MF, Waterhouse RM, Ioannidis P, Weirauch MT, Hughes DST, Murali SC, Werren JH, Jacobs CGC, et al. Molecular evolutionary trends and feeding ecology diversification in the Hemiptera, anchored by the milkweed bug genome. Genome Biology. 20: 64. PMID 30935422 DOI: 10.1186/S13059-019-1660-0 |
0.454 |
|
| 2019 |
Pischedda E, Scolari F, Valerio F, Carballar-Lejarazú R, Catapano PL, Waterhouse RM, Bonizzoni M. Insights Into an Unexplored Component of the Mosquito Repeatome: Distribution and Variability of Viral Sequences Integrated Into the Genome of the Arboviral Vector . Frontiers in Genetics. 10: 93. PMID 30809249 DOI: 10.3389/fgene.2019.00093 |
0.521 |
|
| 2019 |
Kapheim KM, Pan H, Li C, Blatti C, Harpur BA, Ioannidis P, Jones BM, Kent CF, Ruzzante L, Sloofman L, Stolle E, Waterhouse RM, Zayed A, Zhang G, Wcislo WT. Draft Genome Assembly and Population Genetics of an Agricultural Pollinator, the Solitary Alkali Bee (Halictidae: ). G3 (Bethesda, Md.). PMID 30642875 DOI: 10.1534/G3.118.200865 |
0.545 |
|
| 2019 |
Waterhouse RM, Seppey M, Simão FA, Zdobnov EM. Using BUSCO to Assess Insect Genomic Resources. Methods in Molecular Biology (Clifton, N.J.). 1858: 59-74. PMID 30414111 DOI: 10.1007/978-1-4939-8775-7_6 |
0.526 |
|
| 2019 |
de Moya RS, Brown JK, Sweet AD, Walden KKO, Paredes-Montero JR, Waterhouse RM, Johnson KP. Nuclear Orthologs Derived from Whole Genome Sequencing Indicate Cryptic Diversity in the Bemisia tabaci (Insecta: Aleyrodidae) Complex of Whiteflies Diversity. 11: 151. DOI: 10.3390/d11090151 |
0.483 |
|
| 2018 |
Johnson KP, Dietrich CH, Friedrich F, Beutel RG, Wipfler B, Peters RS, Allen JM, Petersen M, Donath A, Walden KKO, Kozlov AM, Podsiadlowski L, Mayer C, Meusemann K, Vasilikopoulos A, ... Waterhouse RM, et al. Phylogenomics and the evolution of hemipteroid insects. Proceedings of the National Academy of Sciences of the United States of America. PMID 30478043 DOI: 10.1073/Pnas.1815820115 |
0.399 |
|
| 2018 |
Ruzzante L, Reijnders MJMF, Waterhouse RM. Of Genes and Genomes: Mosquito Evolution and Diversity. Trends in Parasitology. PMID 30391118 DOI: 10.1016/j.pt.2018.10.003 |
0.59 |
|
| 2018 |
Robertson HM, Waterhouse RM, Walden KKO, Ruzzante L, Reijnders MJMF, Coates BS, Legeai F, Gress JC, Biyiklioglu S, Weaver DK, Wanner KW, Budak H. Genome sequence of the wheat stem sawfly, Cephus cinctus, representing an early-branching lineage of the Hymenoptera, illuminates evolution of hymenopteran chemoreceptors. Genome Biology and Evolution. PMID 30335145 DOI: 10.1093/Gbe/Evy232 |
0.476 |
|
| 2017 |
Waterhouse RM, Seppey M, Simão FA, Manni M, Ioannidis P, Klioutchnikov G, Kriventseva EV, Zdobnov EM. BUSCO applications from quality assessments to gene prediction and phylogenomics. Molecular Biology and Evolution. PMID 29220515 DOI: 10.1093/molbev/msx319 |
0.531 |
|
| 2017 |
Warren WC, Kuderna L, Alexander A, Catchen J, Pérez-Silva JG, López-Otín C, Quesada V, Minx P, Tomlinson C, Montague MJ, Farias FHG, Walter RB, Marques-Bonet T, Glenn T, Kieran TJ, ... ... Waterhouse RM, et al. The novel evolution of the sperm whale genome. Genome Biology and Evolution. PMID 28985367 DOI: 10.1093/Gbe/Evx187 |
0.533 |
|
| 2017 |
Papa F, Windbichler N, Waterhouse RM, Cagnetti A, D'Amato R, Persampieri T, Lawniczak MKN, Nolan T, Papathanos PA. Rapid evolution of female-biased genes among four species of Anopheles malaria mosquitoes. Genome Research. PMID 28747381 DOI: 10.1101/gr.217216.116 |
0.378 |
|
| 2017 |
Ioannidis P, Simao FA, Waterhouse RM, Manni M, Seppey M, Robertson HM, Misof B, Niehuis O, Zdobnov EM. Genomic features of the damselfly Calopteryx splendens representing a sister clade to most insect orders. Genome Biology and Evolution. PMID 28137743 DOI: 10.1093/Gbe/Evx006 |
0.636 |
|
| 2016 |
Zdobnov EM, Tegenfeldt F, Kuznetsov D, Waterhouse RM, Simão FA, Ioannidis P, Seppey M, Loetscher A, Kriventseva EV. OrthoDB v9.1: cataloging evolutionary and functional annotations for animal, fungal, plant, archaeal, bacterial and viral orthologs. Nucleic Acids Research. PMID 27899580 DOI: 10.1093/nar/gkw1119 |
0.401 |
|
| 2016 |
McKenna DD, Scully ED, Pauchet Y, Hoover K, Kirsch R, Geib SM, Mitchell RF, Waterhouse RM, Ahn SJ, Arsala D, Benoit JB, Blackmon H, Bledsoe T, Bowsher JH, Busch A, et al. Genome of the Asian longhorned beetle (Anoplophora glabripennis), a globally significant invasive species, reveals key functional and evolutionary innovations at the beetle-plant interface. Genome Biology. 17: 227. PMID 27832824 DOI: 10.1186/S13059-016-1088-8 |
0.502 |
|
| 2016 |
de la Fuente J, Waterhouse RM, Sonenshine DE, Roe RM, Ribeiro JM, Sattelle DB, Hill CA. Tick Genome Assembled: New Opportunities for Research on Tick-Host-Pathogen Interactions. Frontiers in Cellular and Infection Microbiology. 6: 103. PMID 27695689 DOI: 10.3389/Fcimb.2016.00103 |
0.459 |
|
| 2016 |
Jungreis I, Chan CS, Waterhouse RM, Fields G, Lin MF, Kellis M. Evolutionary dynamics of abundant stop codon readthrough. Molecular Biology and Evolution. PMID 27604222 DOI: 10.1093/Molbev/Msw189 |
0.659 |
|
| 2016 |
Kanost MR, Arrese EL, Cao X, Chen YR, Chellapilla S, Goldsmith MR, Grosse-Wilde E, Heckel DG, Herndon N, Jiang H, Papanicolaou A, Qu J, Soulages JL, Vogel H, Walters J, ... Waterhouse RM, et al. Multifaceted biological insights from a draft genome sequence of the tobacco hornworm moth, Manduca sexta. Insect Biochemistry and Molecular Biology. PMID 27522922 DOI: 10.1016/J.Ibmb.2016.07.005 |
0.563 |
|
| 2016 |
Hoy MA, Waterhouse RM, Wu K, Estep AS, Ioannidis P, Palmer WJ, Pomerantz AF, Simão FA, Thomas J, Jiggins FM, Murphy TD, Pritham EJ, Robertson HM, Zdobnov EM, Gibbs RA, et al. Genome sequencing of the phytoseiid predatory mite Metaseiulus occidentalis reveals completely atomised Hox genes and super-dynamic intron evolution. Genome Biology and Evolution. PMID 26951779 DOI: 10.1093/Gbe/Evw048 |
0.654 |
|
| 2016 |
Mesquita RD, Vionette-Amaral RJ, Lowenberger C, Rivera-Pomar R, Monteiro FA, Minx P, Spieth J, Carvalho AB, Panzera F, Lawson D, Torres AQ, Ribeiro JMC, Sorgine MHF, Waterhouse RM, Montague MJ, et al. Erratum: Genome of Rhodnius prolixus, an insect vector of Chagas disease, reveals unique adaptations to hematophagy and parasite infection (Proceedings of the National Academy of Sciences of the United States of America (2015) 112 (14936-14941) DOI 10.1073/pnas.1506226112) Proceedings of the National Academy of Sciences of the United States of America. 113. PMID 26929356 DOI: 10.1073/Pnas.1600205113 |
0.336 |
|
| 2016 |
Gulia-Nuss M, Nuss AB, Meyer JM, Sonenshine DE, Roe RM, Waterhouse RM, Sattelle DB, de la Fuente J, Ribeiro JM, Megy K, Thimmapuram J, Miller JR, Walenz BP, Koren S, Hostetler JB, et al. Genomic insights into the Ixodes scapularis tick vector of Lyme disease. Nature Communications. 7: 10507. PMID 26856261 DOI: 10.1038/Ncomms10507 |
0.527 |
|
| 2016 |
Benoit JB, Adelman ZN, Reinhardt K, Dolan A, Poelchau M, Jennings EC, Szuter EM, Hagan RW, Gujar H, Shukla JN, Zhu F, Mohan M, Nelson DR, Rosendale AJ, Derst C, ... ... Waterhouse RM, et al. Unique features of a global human ectoparasite identified through sequencing of the bed bug genome. Nature Communications. 7: 10165. PMID 26836814 DOI: 10.1038/Ncomms10165 |
0.538 |
|
| 2016 |
Waterhouse R, Tenan M, Simão FA, Ioannidis P, Kriventseva EV, Zdobnov EM. Large-scale gene functional inference through orthology F1000research. 5. DOI: 10.7490/F1000Research.1111757.1 |
0.344 |
|
| 2015 |
Waterhouse RM. A maturing understanding of the composition of the insect gene repertoire. Current Opinion in Insect Science. 7: 15-23. PMID 32846661 DOI: 10.1016/j.cois.2015.01.004 |
0.641 |
|
| 2015 |
Mesquita RD, Vionette-Amaral RJ, Lowenberger C, Rivera-Pomar R, Monteiro FA, Minx P, Spieth J, Carvalho AB, Panzera F, Lawson D, Torres AQ, Ribeiro JM, Sorgine MH, Waterhouse RM, Montague MJ, et al. Genome of Rhodnius prolixus, an insect vector of Chagas disease, reveals unique adaptations to hematophagy and parasite infection. Proceedings of the National Academy of Sciences of the United States of America. 112: 14936-14941. PMID 26627243 DOI: 10.1073/Pnas.1506226112 |
0.564 |
|
| 2015 |
Chen XG, Jiang X, Gu J, Xu M, Wu Y, Deng Y, Zhang C, Bonizzoni M, Dermauw W, Vontas J, Armbruster P, Huang X, Yang Y, Zhang H, He W, ... ... Waterhouse RM, et al. Genome sequence of the Asian Tiger mosquito, Aedes albopictus, reveals insights into its biology, genetics, and evolution. Proceedings of the National Academy of Sciences of the United States of America. PMID 26483478 DOI: 10.1073/Pnas.1516410112 |
0.599 |
|
| 2015 |
Anstead CA, Korhonen PK, Young ND, Hall RS, Jex AR, Murali SC, Hughes DS, Lee SF, Perry T, Stroehlein AJ, Ansell BR, Breugelmans B, Hofmann A, Qu J, Dugan S, ... ... Waterhouse RM, et al. Lucilia cuprina genome unlocks parasitic fly biology to underpin future interventions. Nature Communications. 6: 7344. PMID 26108605 DOI: 10.1038/Ncomms8344 |
0.522 |
|
| 2015 |
Simão FA, Waterhouse RM, Ioannidis P, Kriventseva EV, Zdobnov EM. BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs. Bioinformatics (Oxford, England). PMID 26059717 DOI: 10.1093/bioinformatics/btv351 |
0.418 |
|
| 2015 |
Kapheim KM, Pan H, Li C, Salzberg SL, Puiu D, Magoc T, Robertson HM, Hudson ME, Venkat A, Fischman BJ, Hernandez A, Yandell M, Ence D, Holt C, Yocum GD, ... ... Waterhouse RM, et al. Social evolution. Genomic signatures of evolutionary transitions from solitary to group living. Science (New York, N.Y.). 348: 1139-43. PMID 25977371 DOI: 10.1126/Science.Aaa4788 |
0.404 |
|
| 2015 |
Sadd BM, Barribeau SM, Bloch G, de Graaf DC, Dearden P, Elsik CG, Gadau J, Grimmelikhuijzen CJ, Hasselmann M, Lozier JD, Robertson HM, Smagghe G, Stolle E, Van Vaerenbergh M, Waterhouse RM, et al. The genomes of two key bumblebee species with primitive eusocial organization. Genome Biology. 16: 76. PMID 25908251 DOI: 10.1186/S13059-015-0623-3 |
0.453 |
|
| 2015 |
Zhao C, Escalante LN, Chen H, Benatti TR, Qu J, Chellapilla S, Waterhouse RM, Wheeler D, Andersson MN, Bao R, Batterton M, Behura SK, Blankenburg KP, Caragea D, Carolan JC, et al. A massive expansion of effector genes underlies gall-formation in the wheat pest Mayetiola destructor. Current Biology : Cb. 25: 613-20. PMID 25660540 DOI: 10.1016/J.Cub.2014.12.057 |
0.382 |
|
| 2015 |
Neafsey DE, Waterhouse RM, Abai MR, Aganezov SS, Alekseyev MA, Allen JE, Amon J, Arcà B, Arensburger P, Artemov G, Assour LA, Basseri H, Berlin A, Birren BW, Blandin SA, et al. Mosquito genomics. Highly evolvable malaria vectors: the genomes of 16 Anopheles mosquitoes. Science (New York, N.Y.). 347: 1258522. PMID 25554792 DOI: 10.1126/Science.1258522 |
0.57 |
|
| 2015 |
Fontaine MC, Pease JB, Steele A, Waterhouse RM, Neafsey DE, Sharakhov IV, Jiang X, Hall AB, Catteruccia F, Kakani E, Mitchell SN, Wu YC, Smith HA, Love RR, Lawniczak MK, et al. Mosquito genomics. Extensive introgression in a malaria vector species complex revealed by phylogenomics. Science (New York, N.Y.). 347: 1258524. PMID 25431491 DOI: 10.1126/Science.1258524 |
0.543 |
|
| 2015 |
Kriventseva EV, Tegenfeldt F, Petty TJ, Waterhouse RM, Simão FA, Pozdnyakov IA, Ioannidis P, Zdobnov EM. OrthoDB v8: update of the hierarchical catalog of orthologs and the underlying free software. Nucleic Acids Research. 43: D250-6. PMID 25428351 DOI: 10.1093/Nar/Gku1220 |
0.493 |
|
| 2015 |
Waterhouse RM. A maturing understanding of the composition of the insect gene repertoire Current Opinion in Insect Science. 7: 15-23. DOI: 10.1016/j.cois.2015.01.004 |
0.305 |
|
| 2014 |
Jiang X, Peery A, Hall AB, Sharma A, Chen XG, Waterhouse RM, Komissarov A, Riehle MM, Shouche Y, Sharakhova MV, Lawson D, Pakpour N, Arensburger P, Davidson VL, Eiglmeier K, et al. Genome analysis of a major urban malaria vector mosquito, Anopheles stephensi. Genome Biology. 15: 459. PMID 25244985 DOI: 10.1186/S13059-014-0459-2 |
0.349 |
|
| 2014 |
Ahola V, Lehtonen R, Somervuo P, Salmela L, Koskinen P, Rastas P, Välimäki N, Paulin L, Kvist J, Wahlberg N, Tanskanen J, Hornett EA, Ferguson LC, Luo S, Cao Z, ... ... Waterhouse RM, et al. The Glanville fritillary genome retains an ancient karyotype and reveals selective chromosomal fusions in Lepidoptera. Nature Communications. 5: 4737. PMID 25189940 DOI: 10.1038/Ncomms5737 |
0.311 |
|
| 2014 |
Elsik CG, Worley KC, Bennett AK, Beye M, Camara F, Childers CP, de Graaf DC, Debyser G, Deng J, Devreese B, Elhaik E, Evans JD, Foster LJ, Graur D, Guigo R, ... ... Waterhouse RM, et al. Finding the missing honey bee genes: lessons learned from a genome upgrade. Bmc Genomics. 15: 86. PMID 24479613 DOI: 10.1186/1471-2164-15-86 |
0.635 |
|
| 2013 |
Neafsey DE, Christophides GK, Collins FH, Emrich SJ, Fontaine MC, Gelbart W, Hahn MW, Howell PI, Kafatos FC, Lawson D, Muskavitch MA, Waterhouse RM, Williams LJ, Besansky NJ. The evolution of the Anopheles 16 genomes project. G3 (Bethesda, Md.). 3: 1191-4. PMID 23708298 DOI: 10.1534/G3.113.006247 |
0.533 |
|
| 2013 |
Simola DF, Wissler L, Donahue G, Waterhouse RM, Helmkampf M, Roux J, Nygaard S, Glastad KM, Hagen DE, Viljakainen L, Reese JT, Hunt BG, Graur D, Elhaik E, Kriventseva EV, et al. Social insect genomes exhibit dramatic evolution in gene composition and regulation while preserving regulatory features linked to sociality. Genome Research. 23: 1235-47. PMID 23636946 DOI: 10.1101/Gr.155408.113 |
0.582 |
|
| 2013 |
Waterhouse RM, Tegenfeldt F, Li J, Zdobnov EM, Kriventseva EV. OrthoDB: a hierarchical catalog of animal, fungal and bacterial orthologs. Nucleic Acids Research. 41: D358-65. PMID 23180791 DOI: 10.1093/nar/gks1116 |
0.537 |
|
| 2011 |
Li J, Waterhouse RM, Zdobnov EM. A remarkably stable TipE gene cluster: evolution of insect Para sodium channel auxiliary subunits. Bmc Evolutionary Biology. 11: 337. PMID 22098672 DOI: 10.1186/1471-2148-11-337 |
0.431 |
|
| 2011 |
Waterhouse RM, Zdobnov EM, Kriventseva EV. Correlating traits of gene retention, sequence divergence, duplicability and essentiality in vertebrates, arthropods, and fungi. Genome Biology and Evolution. 3: 75-86. PMID 21148284 DOI: 10.1093/gbe/evq083 |
0.506 |
|
| 2011 |
Waterhouse RM, Zdobnov EM, Tegenfeldt F, Li J, Kriventseva EV. OrthoDB: the hierarchical catalog of eukaryotic orthologs in 2011. Nucleic Acids Research. 39: D283-8. PMID 20972218 DOI: 10.1093/nar/gkq930 |
0.527 |
|
| 2010 |
Bartholomay LC, Waterhouse RM, Mayhew GF, Campbell CL, Michel K, Zou Z, Ramirez JL, Das S, Alvarez K, Arensburger P, Bryant B, Chapman SB, Dong Y, Erickson SM, Karunaratne SH, et al. Pathogenomics of Culex quinquefasciatus and meta-analysis of infection responses to diverse pathogens. Science (New York, N.Y.). 330: 88-90. PMID 20929811 DOI: 10.1126/Science.1193162 |
0.307 |
|
| 2010 |
Arensburger P, Megy K, Waterhouse RM, Abrudan J, Amedeo P, Antelo B, Bartholomay L, Bidwell S, Caler E, Camara F, Campbell CL, Campbell KS, Casola C, Castro MT, Chandramouliswaran I, et al. Sequencing of Culex quinquefasciatus establishes a platform for mosquito comparative genomics. Science (New York, N.Y.). 330: 86-8. PMID 20929810 DOI: 10.1126/Science.1191864 |
0.532 |
|
| 2010 |
Waterhouse RM, Povelones M, Christophides GK. Sequence-structure-function relations of the mosquito leucine-rich repeat immune proteins. Bmc Genomics. 11: 531. PMID 20920294 DOI: 10.1186/1471-2164-11-531 |
0.322 |
|
| 2010 |
Kirkness EF, Haas BJ, Sun W, Braig HR, Perotti MA, Clark JM, Lee SH, Robertson HM, Kennedy RC, Elhaik E, Gerlach D, Kriventseva EV, Elsik CG, Graur D, Hill CA, ... ... Waterhouse RM, et al. Genome sequences of the human body louse and its primary endosymbiont provide insights into the permanent parasitic lifestyle. Proceedings of the National Academy of Sciences of the United States of America. 107: 12168-73. PMID 20566863 DOI: 10.1073/Pnas.1003379107 |
0.57 |
|
| 2010 |
Werren JH, Richards S, Desjardins CA, Niehuis O, Gadau J, Colbourne JK, Werren JH, Richards S, Desjardins CA, Niehuis O, Gadau J, Colbourne JK, Beukeboom LW, Desplan C, ... ... Waterhouse RM, et al. Functional and evolutionary insights from the genomes of three parasitoid Nasonia species. Science (New York, N.Y.). 327: 343-8. PMID 20075255 DOI: 10.1126/Science.1178028 |
0.543 |
|
| 2009 |
Pinto SB, Lombardo F, Koutsos AC, Waterhouse RM, McKay K, An C, Ramakrishnan C, Kafatos FC, Michel K. Discovery of Plasmodium modulators by genome-wide analysis of circulating hemocytes in Anopheles gambiae. Proceedings of the National Academy of Sciences of the United States of America. 106: 21270-5. PMID 19940242 DOI: 10.1073/Pnas.0909463106 |
0.448 |
|
| 2009 |
Kafatos F, Waterhouse R, Zdobnov E, Christophides G. Comparative genomics of insect immunity Insect Infection and Immunity: Evolution, Ecology, and Mechanisms. DOI: 10.1093/acprof:oso/9780199551354.003.0006 |
0.426 |
|
| 2008 |
Richards S, Gibbs RA, Weinstock GM, Brown SJ, Denell R, Beeman RW, Gibbs R, Beeman RW, Brown SJ, Bucher G, Friedrich M, Grimmelikhuijzen CJ, Klingler M, Lorenzen M, ... ... Waterhouse RM, et al. The genome of the model beetle and pest Tribolium castaneum. Nature. 452: 949-55. PMID 18362917 DOI: 10.1038/Nature06784 |
0.454 |
|
| 2008 |
Waterhouse RM, Wyder S, Zdobnov EM. The Aedes aegypti genome: a comparative perspective. Insect Molecular Biology. 17: 1-8. PMID 18237279 DOI: 10.1111/J.1365-2583.2008.00772.X |
0.67 |
|
| 2007 |
Waterhouse RM, Kriventseva EV, Meister S, Xi Z, Alvarez KS, Bartholomay LC, Barillas-Mury C, Bian G, Blandin S, Christensen BM, Dong Y, Jiang H, Kanost MR, Koutsos AC, Levashina EA, et al. Evolutionary dynamics of immune-related genes and pathways in disease-vector mosquitoes. Science (New York, N.Y.). 316: 1738-43. PMID 17588928 DOI: 10.1126/Science.1139862 |
0.349 |
|
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