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Timothy Riley - Publications

Affiliations: 
2017 Biochemistry University of Notre Dame, Notre Dame, IN, United States 
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17/41 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Partin AC, Bruno R, Shafaattalab S, Vander Mause E, Winters A, Daris M, Gahrs C, Jette CA, DiAndreth B, Sandberg ML, Hamburger AE, Kamb A, Riley TP. Geometric parameters that affect the behavior of logic-gated CAR T cells. Frontiers in Immunology. 15: 1304765. PMID 38343543 DOI: 10.3389/fimmu.2024.1304765  0.382
2022 Mock JY, Winters A, Riley TP, Bruno R, Naradikian MS, Sharma S, Jette CA, Elshimali R, Gahrs C, Toledo-Warshaviak D, West AP, Kamb A, Hamburger AE. HLA-A∗02-gated safety switch for cancer therapy has exquisite specificity for its allelic target antigen. Molecular Therapy Oncolytics. 27: 157-166. PMID 36381658 DOI: 10.1016/j.omto.2022.09.010  0.369
2019 Riley TP, Keller GLJ, Smith AR, Davancaze LM, Arbuiso AG, Devlin JR, Baker BM. Structure Based Prediction of Neoantigen Immunogenicity. Frontiers in Immunology. 10: 2047. PMID 31555277 DOI: 10.3389/Fimmu.2019.02047  0.674
2018 Hellman LM, Foley KC, Singh NK, Alonso JA, Riley TP, Devlin JR, Ayres CM, Keller GLJ, Zhang Y, Vander Kooi CW, Nishimura MI, Baker BM. Improving T Cell Receptor On-Target Specificity via Structure-Guided Design. Molecular Therapy : the Journal of the American Society of Gene Therapy. PMID 30617019 DOI: 10.1016/J.Ymthe.2018.12.010  0.761
2018 Riley TP, Baker BM. The intersection of affinity and specificity in the development and optimization of T cell receptor based therapeutics. Seminars in Cell & Developmental Biology. 84: 30-41. PMID 30449534 DOI: 10.1016/J.Semcdb.2017.10.017  0.639
2018 Riley TP, Hellman LM, Gee MH, Mendoza JL, Alonso JA, Foley KC, Nishimura MI, Vander Kooi CW, Garcia KC, Baker BM. T cell receptor cross-reactivity expanded by dramatic peptide-MHC adaptability. Nature Chemical Biology. 14: 934-942. PMID 30224695 DOI: 10.1038/S41589-018-0130-4  0.788
2018 Eby JM, Smith AR, Riley TP, Cosgrove C, Ankney CM, Henning SW, Paulos CM, Garrett-Mayer E, Luiten RM, Nishimura MI, Baker BM, Le Poole IC. Molecular properties of gp100-reactive T cell receptors drive the cytokine profile and antitumor efficacy of transgenic host T cells. Pigment Cell & Melanoma Research. PMID 30009548 DOI: 10.1111/Pcmr.12724  0.631
2017 Singh NK, Riley TP, Baker SCB, Borrman T, Weng Z, Baker BM. Emerging Concepts in TCR Specificity: Rationalizing and (Maybe) Predicting Outcomes. Journal of Immunology (Baltimore, Md. : 1950). 199: 2203-2213. PMID 28923982 DOI: 10.4049/Jimmunol.1700744  0.761
2017 Ayres CM, Riley TP, Corcelli SA, Baker BM. Modeling Sequence Dependent Peptide Fluctuations in Immunologic Recognition. Journal of Chemical Information and Modeling. PMID 28696685 DOI: 10.1021/Acs.Jcim.7B00118  0.598
2017 Riley TP, Mendoza J, Garcia KC, Baker BM. 2064 Journal of Clinical and Translational Science. 1: 54-55. DOI: 10.1017/cts.2017.195  0.685
2016 Harris DT, Wang N, Riley TP, Anderson SD, Singh NK, Procko E, Baker BM, Kranz DM. Deep mutational scans as a guide to engineering high-affinity T cell receptor interactions with peptide-bound MHC. The Journal of Biological Chemistry. PMID 27681597 DOI: 10.1074/Jbc.M116.748681  0.742
2016 Riley TP, Ayres CM, Hellman LM, Singh NK, Cosiano M, Cimons JM, Anderson MJ, Piepenbrink KH, Pierce BG, Weng Z, Baker BM. A generalized framework for computational design and mutational scanning of T-cell receptor binding interfaces. Protein Engineering, Design & Selection : Peds. PMID 27624308 DOI: 10.1093/Protein/Gzw050  0.754
2016 Riley TP, Singh NK, Pierce BG, Weng Z, Baker BM. Computational Modeling of T Cell Receptor Complexes. Methods in Molecular Biology (Clifton, N.J.). 1414: 319-40. PMID 27094300 DOI: 10.1007/978-1-4939-3569-7_19  0.758
2016 Riley TP, Singh NK, Pierce BG, Baker BM, Weng Z. Computational Reprogramming of T Cell Antigen Receptor Binding Properties. Methods in Molecular Biology (Clifton, N.J.). 1414: 305-18. PMID 27094299 DOI: 10.1007/978-1-4939-3569-7_18  0.787
2016 Spear TT, Riley TP, Lyons GE, Callender GG, Roszkowski JJ, Wang Y, Simms PE, Scurti GM, Foley KC, Murray DC, Hellman LM, McMahan RH, Iwashima M, Garrett-Mayer E, Rosen HR, et al. Hepatitis C virus-cross-reactive TCR gene-modified T cells: a model for immunotherapy against diseases with genomic instability. Journal of Leukocyte Biology. PMID 26921345 DOI: 10.1189/Jlb.2A1215-561R  0.735
2016 Hellman LM, Yin L, Wang Y, Blevins SJ, Riley TP, Belden OS, Spear TT, Nishimura MI, Stern LJ, Baker BM. Differential scanning fluorimetry based assessments of the thermal and kinetic stability of peptide-MHC complexes. Journal of Immunological Methods. PMID 26906089 DOI: 10.1016/J.Jim.2016.02.016  0.719
2016 Blevins SJ, Pierce BG, Singh NK, Riley TP, Wang Y, Spear TT, Nishimura MI, Weng Z, Baker BM. How structural adaptability exists alongside HLA-A2 bias in the human αβ TCR repertoire. Proceedings of the National Academy of Sciences of the United States of America. PMID 26884163 DOI: 10.1073/Pnas.1522069113  0.722
Low-probability matches (unlikely to be authored by this person)
2021 Riley TP, Chou HT, Hu R, Bzymek KP, Correia AR, Partin AC, Li D, Gong D, Wang Z, Yu X, Manzanillo P, Garces F. Enhancing the Prefusion Conformational Stability of SARS-CoV-2 Spike Protein Through Structure-Guided Design. Frontiers in Immunology. 12: 660198. PMID 33968063 DOI: 10.3389/fimmu.2021.660198  0.287
2023 Harmalkar A, Rao R, Richard Xie Y, Honer J, Deisting W, Anlahr J, Hoenig A, Czwikla J, Sienz-Widmann E, Rau D, Rice AJ, Riley TP, Li D, Catterall HB, Tinberg CE, et al. Toward generalizable prediction of antibody thermostability using machine learning on sequence and structure features. Mabs. 15: 2163584. PMID 36683173 DOI: 10.1080/19420862.2022.2163584  0.264
2021 Estes B, Sudom A, Gong D, Whittington DA, Li V, Mohr C, Li D, Riley TP, Shi SD, Zhang J, Garces F, Wang Z. Next generation Fc scaffold for multispecific antibodies. Iscience. 24: 103447. PMID 34877503 DOI: 10.1016/j.isci.2021.103447  0.22
2021 Gong D, Riley TP, Bzymek KP, Correia AR, Li D, Spahr C, Robinson JH, Case RB, Wang Z, Garces F. Rational selection of building blocks for the assembly of bispecific antibodies. Mabs. 13: 1870058. PMID 33397191 DOI: 10.1080/19420862.2020.1870058  0.195
2022 Li D, Partin AC, Zhao L, Chen I, Michaels ML, Wang Z, Garces F, Gong D, Riley TP. Protocol for high-throughput cloning, expression, purification, and evaluation of bispecific antibodies. Star Protocols. 3: 101428. PMID 35664258 DOI: 10.1016/j.xpro.2022.101428  0.152
2022 Riley TD, Radico JA, Parascando J, Berg A, Oser TK. Challenges in Effective Faculty and Provider Recognition to Enhance Engagement. Family Medicine. 54: 461-465. PMID 35675461 DOI: 10.22454/FamMed.2022.324428  0.127
2022 Riley TD, Roy S, Parascando JA, Wile K, LaGamma C, Dong H, Zgierska AE. Mindfulness-Based Stress Reduction Live Online During the COVID-19 Pandemic: A Mixed Methods Feasibility Study. Journal of Integrative and Complementary Medicine. PMID 35363576 DOI: 10.1089/jicm.2021.0415  0.09
2023 Radico JA, Parascando J, Oser TK, Riley TD. Assessment of a Recognition Program in an Academic Family Medicine Department. Family Medicine. 55: 180-184. PMID 36888672 DOI: 10.22454/FamMed.2023.493047  0.079
2020 Riley TD, Curry WJ, Beck MJ, Berg A, Ruffin MT. Feasibility of Nonanonymous Burnout Surveys in a Large Academic Department. Family Medicine. 52: 278-281. PMID 32267523 DOI: 10.22454/Fammed.2020.471855  0.078
2022 Sell J, Riley TD, Miller EL. Integrating Quality Improvement and Community Engagement Education: Curricular Evaluation of Resident Population Health Training. Family Medicine. 54: 634-639. PMID 36098695 DOI: 10.22454/FamMed.2022.637933  0.07
2022 Messner E, Parascando JA, La Gamma C, Bone C, Clebak KT, Riley TD. Effects of Early COVID-19 Restrictions on Resident Well-being and Burnout. Family Medicine. 54: 708-712. PMID 36219427 DOI: 10.22454/FamMed.2022.233405  0.057
2013 Wang A, Nizran P, Malone MA, Riley T. Urinary tract infections. Primary Care. 40: 687-706. PMID 23958364 DOI: 10.1016/j.pop.2013.06.005  0.052
2020 Ragozzino FJ, Arnold RA, Fenwick AJ, Riley TP, Lindberg JEM, Peterson B, Peters JH. TRPM3 expression and control of glutamate release from primary vagal afferent neurons. Journal of Neurophysiology. PMID 33296617 DOI: 10.1152/jn.00229.2020  0.048
2024 Bufalini CM, Kraschnewski JL, Riley TD, Wile K, Spanos K, Wong A, Myrick JG, Schaefer EW, Calo WA. Stories to Prevent Cancer: A Pilot Study Using Cancer Survivor Narratives to Increase Human Papillomavirus Vaccine Intentions. Cancer Control : Journal of the Moffitt Cancer Center. 31: 10732748241237328. PMID 38454302 DOI: 10.1177/10732748241237328  0.047
2018 Amoako AO, Pujalte GG, Kaushik N, Riley T. Patient Discomfort and Resident Confidence After Knee Intra-articular Injection Simulation Training: A Randomized Control Trial Study. Clinical Medicine Insights. Arthritis and Musculoskeletal Disorders. 11: 1179544118782903. PMID 30013410 DOI: 10.1177/1179544118782903  0.046
2017 Miyazaki T, Choi IY, Rubas W, Anand NK, Ali C, Evans J, Gursahani H, Hennessy M, Kim G, McWeeney D, Pfeiffer J, Quach P, Gauvin D, Riley TA, Riggs JA, et al. NKTR-181: A Novel Mu-Opioid Analgesic with Inherently Low Abuse Potential. The Journal of Pharmacology and Experimental Therapeutics. PMID 28778859 DOI: 10.1124/jpet.117.243030  0.043
2024 Riley TD, Parascando JA, VanDyke E, Stuckey HL, Dong H, Pasha-Razzak O, Kass LE, McCall-Hosenfeld J, Bronson SK. How Does a Junior Faculty Development Program Affect Burnout? A Mixed Methods Assessment. Journal of Medical Education and Curricular Development. 11: 23821205231223294. PMID 38322705 DOI: 10.1177/23821205231223294  0.039
2013 Riley TP, Neal-McKinney JM, Buelow DR, Konkel ME, Simasko SM. Capsaicin-sensitive vagal afferent neurons contribute to the detection of pathogenic bacterial colonization in the gut. Journal of Neuroimmunology. 257: 36-45. PMID 23481698 DOI: 10.1016/J.Jneuroim.2013.01.009  0.039
2016 Kakli HA, Riley TD. Allergic Rhinitis. Primary Care. 43: 465-75. PMID 27545735 DOI: 10.1016/j.pop.2016.04.009  0.035
2019 Riley TB, Overton PG. Enhancing the efficacy of 5-HT uptake inhibitors in the treatment of attention deficit hyperactivity disorder. Medical Hypotheses. 133: 109407. PMID 31586811 DOI: 10.1016/j.mehy.2019.109407  0.033
2015 Amoako AO, Brown C, Riley T. Syndrome of inappropriate antidiuretic hormone secretion: a story of duloxetine-induced hyponatraemia. Bmj Case Reports. 2015. PMID 25911354 DOI: 10.1136/bcr-2014-208037  0.03
2019 Clebak KT, Naccarato J, Riley TD. Saline Irrigation for Allergic Rhinitis. American Family Physician. 99: 544-545. PMID 31038895  0.024
2020 Lennon RP, Clebak KT, Stepanian JB, Riley TD. Mock Trial as a Learning Tool in a Family Medicine Residency. Family Medicine. 52: 741-744. PMID 33151535 DOI: 10.22454/FamMed.2020.405328  0.022
2003 Elefteriades J, Lovoulos C, Edwards R, Tittle S, Riley T, Tang P, Rocco E, Kopf G. Novel technique for isolated accessory right heart transplantation for congenital heart disease. The Journal of Thoracic and Cardiovascular Surgery. 125: 1283-90. PMID 12830045  0.01
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