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Jian Yan - Publications

Affiliations: 
City University of Hong Kong, Kowloon, Hong Kong 
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20 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Benaglio P, Zhu H, Okino ML, Yan J, Elgamal R, Nariai N, Beebe E, Korgaonkar K, Qiu Y, Donovan MKR, Chiou J, Wang G, Newsome J, Kaur J, Miller M, et al. Type 1 diabetes risk genes mediate pancreatic beta cell survival in response to proinflammatory cytokines. Cell Genomics. 2: 100214. PMID 36778047 DOI: 10.1016/j.xgen.2022.100214  0.436
2021 Geusz RJ, Wang A, Chiou J, Lancman JJ, Wetton N, Kefalopoulou S, Wang J, Qui Y, Yan J, Aylward A, Ren B, Dong PDS, Gaulton KJ, Sander M. Pancreatic progenitor epigenome maps prioritize type 2 diabetes risk genes with roles in development. Elife. 10. PMID 33544077 DOI: 10.7554/eLife.59067  0.426
2021 Yan J, Qiu Y, Ribeiro Dos Santos AM, Yin Y, Li YE, Vinckier N, Nariai N, Benaglio P, Raman A, Li X, Fan S, Chiou J, Chen F, Frazer KA, Gaulton KJ, et al. Systematic analysis of binding of transcription factors to noncoding variants. Nature. PMID 33505025 DOI: 10.1038/s41586-021-03211-0  0.478
2020 Wang Z, Li Y, Hou B, Pronobis MI, Wang M, Wang Y, Cheng G, Weng W, Wang Y, Tang Y, Xu X, Pan R, Lin F, Wang N, Chen Z, ... ... Yan J, et al. An array of 60,000 antibodies for proteome-scale antibody generation and target discovery. Science Advances. 6: eaax2271. PMID 32195335 DOI: 10.1126/Sciadv.Aax2271  0.314
2019 Wang X, Cairns MJ, Yan J. Super-enhancers in transcriptional regulation and genome organization. Nucleic Acids Research. PMID 31724731 DOI: 10.1093/Nar/Gkz1038  0.362
2019 Greenwald WW, Chiou J, Yan J, Qiu Y, Dai N, Wang A, Nariai N, Aylward A, Han JY, Kadakia N, Regue L, Okino ML, Drees F, Kramer D, Vinckier N, et al. Pancreatic islet chromatin accessibility and conformation reveals distal enhancer networks of type 2 diabetes risk. Nature Communications. 10: 2078. PMID 31064983 DOI: 10.1038/S41467-019-09975-4  0.48
2018 Yan J, Chen SA, Local A, Liu T, Qiu Y, Dorighi KM, Preissl S, Rivera CM, Wang C, Ye Z, Ge K, Hu M, Wysocka J, Ren B. Histone H3 lysine 4 monomethylation modulates long-range chromatin interactions at enhancers. Cell Research. 28: 387. PMID 29497152 DOI: 10.1038/Cr.2018.18  0.414
2018 Yan J, Chen SA, Local A, Liu T, Qiu Y, Dorighi KM, Preissl S, Rivera CM, Wang C, Ye Z, Ge K, Hu M, Wysocka J, Ren B. Histone H3 lysine 4 monomethylation modulates long-range chromatin interactions at enhancers. Cell Research. PMID 29313530 DOI: 10.1038/cr.2018.1  0.42
2017 Dave K, Sur I, Yan J, Zhang J, Kaasinen E, Zhong F, Blaas L, Li X, Kharazi S, Gustafsson C, De Paepe A, Månsson R, Taipale J. Mice deficient of Myc super-enhancer region reveal differential control mechanism between normal and pathological growth. Elife. 6. PMID 28583252 DOI: 10.7554/Elife.23382  0.326
2017 Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, ... Yan J, et al. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science (New York, N.Y.). 356. PMID 28473536 DOI: 10.1126/Science.Aaj2239  0.352
2017 Xiong X, Zhang Y, Yan J, Jain S, Chee S, Ren B, Zhao H. A Scalable Epitope Tagging Approach for High Throughput ChIP-Seq Analysis. Acs Synthetic Biology. PMID 28215080 DOI: 10.1021/Acssynbio.6B00358  0.505
2017 Liu NQ, Ter Huurne M, Nguyen LN, Peng T, Wang SY, Studd JB, Joshi O, Ongen H, Bramsen JB, Yan J, Andersen CL, Taipale J, Dermitzakis ET, Houlston RS, Hubner NC, et al. The non-coding variant rs1800734 enhances DCLK3 expression through long-range interaction and promotes colorectal cancer progression. Nature Communications. 8: 14418. PMID 28195176 DOI: 10.1038/Ncomms14418  0.388
2014 Huang Q, Whitington T, Gao P, Lindberg JF, Yang Y, Sun J, Väisänen MR, Szulkin R, Annala M, Yan J, Egevad LA, Zhang K, Lin R, Jolma A, Nykter M, et al. A prostate cancer susceptibility allele at 6q22 increases RFX6 expression by modulating HOXB13 chromatin binding. Nature Genetics. 46: 126-35. PMID 24390282 DOI: 10.1038/Ng.2862  0.356
2013 Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, et al. DNA-binding specificities of human transcription factors. Cell. 152: 327-39. PMID 23332764 DOI: 10.1016/J.Cell.2012.12.009  0.365
2012 Sur IK, Hallikas O, Vähärautio A, Yan J, Turunen M, Enge M, Taipale M, Karhu A, Aaltonen LA, Taipale J. Mice Lacking a Myc Enhancer That Includes Human SNP rs6983267 Are Resistant to Intestinal Tumors Science. 338: 1360-1363. PMID 23118011 DOI: 10.1126/Science.1228606  0.329
2012 Tuupanen S, Yan J, Turunen M, Gylfe AE, Kaasinen E, Li L, Eng C, Culver DA, Kalady MF, Pennison MJ, Pasche B, Manne U, de la Chapelle A, Hampel H, Henderson BE, et al. Characterization of the colorectal cancer-associated enhancer MYC-335 at 8q24: the role of rs67491583. Cancer Genetics. 205: 25-33. PMID 22429595 DOI: 10.1016/J.Cancergen.2012.01.005  0.344
2010 Wei GH, Badis G, Berger MF, Kivioja T, Palin K, Enge M, Bonke M, Jolma A, Varjosalo M, Gehrke AR, Yan J, Talukder S, Turunen M, Taipale M, Stunnenberg HG, et al. Genome-wide analysis of ETS-family DNA-binding in vitro and in vivo. The Embo Journal. 29: 2147-60. PMID 20517297 DOI: 10.1038/Emboj.2010.106  0.338
2010 Jolma A, Kivioja T, Toivonen J, Cheng L, Wei G, Enge M, Taipale M, Vaquerizas JM, Yan J, Sillanpää MJ, Bonke M, Palin K, Talukder S, Hughes TR, Luscombe NM, et al. Multiplexed massively parallel SELEX for characterization of human transcription factor binding specificities. Genome Research. 20: 861-73. PMID 20378718 DOI: 10.1101/Gr.100552.109  0.357
2010 Tuupanen S, Yan J, Turunen M, Gylfe A, Li L, Eng C, Culver D, Kalady M, Chapelle Adl, Askhtorab H, Smooth D, Sandler R, Keku T, Ellis N, Kupfer S, et al. Abstract 4731: Resequencing of the MYC-335 enhancer in the colorectal cancer associated 8q24 region Cancer Research. 70: 4731-4731. DOI: 10.1158/1538-7445.Am10-4731  0.37
2009 Tuupanen S, Turunen M, Lehtonen R, Hallikas O, Vanharanta S, Kivioja T, Björklund M, Wei G, Yan J, Niittymäki I, Mecklin JP, Järvinen H, Ristimäki A, Di-Bernardo M, East P, et al. The common colorectal cancer predisposition SNP rs6983267 at chromosome 8q24 confers potential to enhanced Wnt signaling. Nature Genetics. 41: 885-90. PMID 19561604 DOI: 10.1038/Ng.406  0.338
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