Year |
Citation |
Score |
2023 |
Weng C, Gu A, Zhang S, Lu L, Ke L, Gao P, Liu X, Wang Y, Hu P, Plummer D, MacDonald E, Zhang S, Xi J, Lai S, Leskov K, ... ... Li Y, et al. Single cell multiomic analysis reveals diabetes-associated β-cell heterogeneity driven by HNF1A. Nature Communications. 14: 5400. PMID 37669939 DOI: 10.1038/s41467-023-41228-3 |
0.68 |
|
2023 |
Chen H, Zhang L, Yue F, Cui C, Li Y, Zhang Q, Liang L, Meng L, Zhang C. Effects of assisted reproductive technology on gene expression in heart and spleen tissues of adult offspring mouse. Frontiers in Endocrinology. 14: 1035161. PMID 37065763 DOI: 10.3389/fendo.2023.1035161 |
0.432 |
|
2022 |
Zhang S, Plummer D, Lu L, Cui J, Xu W, Wang M, Liu X, Prabhakar N, Shrinet J, Srinivasan D, Fraser P, Li Y, Li J, Jin F. DeepLoop robustly maps chromatin interactions from sparse allele-resolved or single-cell Hi-C data at kilobase resolution. Nature Genetics. 54: 1013-1025. PMID 35817982 DOI: 10.1038/s41588-022-01116-w |
0.684 |
|
2021 |
Dong C, Simonett SP, Shin S, Stapleton DS, Schueler KL, Churchill GA, Lu L, Liu X, Jin F, Li Y, Attie AD, Keller MP, Keleş S. INFIMA leverages multi-omics model organism data to identify effector genes of human GWAS variants. Genome Biology. 22: 241. PMID 34425882 DOI: 10.1186/s13059-021-02450-8 |
0.688 |
|
2020 |
Weng C, Xi J, Li H, Cui J, Gu A, Lai S, Leskov K, Ke L, Jin F, Li Y. Single-cell lineage analysis reveals extensive multimodal transcriptional control during directed beta-cell differentiation. Nature Metabolism. PMID 33257854 DOI: 10.1038/s42255-020-00314-2 |
0.714 |
|
2020 |
Karakose E, Wang H, Inabnet W, Thakker RV, Libutti S, Fernandez-Ranvier G, Suh H, Stevenson M, Kinoshita Y, Donovan M, Antipin Y, Li Y, Liu X, Jin F, Wang P, et al. Aberrant methylation underlies insulin gene expression in human insulinoma. Nature Communications. 11: 5210. PMID 33060578 DOI: 10.1038/s41467-020-18839-1 |
0.684 |
|
2020 |
Van Buren E, Hu M, Weng C, Jin F, Li Y, Wu D, Li Y. TWO-SIGMA: A novel two-component single cell model-based association method for single-cell RNA-seq data. Genetic Epidemiology. PMID 32989764 DOI: 10.1002/gepi.22361 |
0.674 |
|
2020 |
Hsu J, Huang HT, Lee CT, Choudhuri A, Wilson NK, Abraham BJ, Moignard V, Kucinski I, Yu S, Hyde RK, Tober J, Cai X, Li Y, Guo Y, Yang S, et al. CHD7 and Runx1 interaction provides a braking mechanism for hematopoietic differentiation. Proceedings of the National Academy of Sciences of the United States of America. PMID 32883883 DOI: 10.1073/Pnas.2003228117 |
0.467 |
|
2020 |
Lu L, Liu X, Huang WK, Giusti-Rodríguez P, Cui J, Zhang S, Xu W, Wen Z, Ma S, Rosen JD, Xu Z, Bartels CF, Kawaguchi R, Hu M, Scacheri PC, ... ... Li Y, ... ... Li Y, et al. Robust Hi-C Maps of Enhancer-Promoter Interactions Reveal the Function of Non-coding Genome in Neural Development and Diseases. Molecular Cell. PMID 32592681 DOI: 10.1016/J.Molcel.2020.06.007 |
0.707 |
|
2020 |
Demir E, Qin T, Li Y, Zhang Y, Guo X, Ingle T, Yan J, Orza AI, Biris AS, Ghorai S, Zhou T, Chen T. Cytotoxicity and genotoxicity of cadmium oxide nanoparticles evaluated using in vitro assays. Mutation Research. 850: 503149. PMID 32247558 DOI: 10.1016/J.Mrgentox.2020.503149 |
0.402 |
|
2019 |
Fang Z, Weng C, Li H, Tao R, Mai W, Liu X, Lu L, Lai S, Duan Q, Alvarez C, Arvan P, Wynshaw-Boris A, Li Y, Pei Y, Jin F, ... Li Y, et al. Single-Cell Heterogeneity Analysis and CRISPR Screen Identify Key β-Cell-Specific Disease Genes. Cell Reports. 26: 3132-3144.e7. PMID 30865899 DOI: 10.1016/J.Celrep.2019.02.043 |
0.722 |
|
2018 |
Elitt MS, Shick HE, Madhavan M, Allan KC, Clayton BLL, Weng C, Miller TE, Factor DC, Barbar L, Nawash BS, Nevin ZS, Lager AM, Li Y, Jin F, Adams DJ, et al. Chemical Screening Identifies Enhancers of Mutant Oligodendrocyte Survival and Unmasks a Distinct Pathological Phase in Pelizaeus-Merzbacher Disease. Stem Cell Reports. PMID 30146490 DOI: 10.1016/J.Stemcr.2018.07.015 |
0.673 |
|
2017 |
Mack SC, Pajtler KW, Chavez L, Okonechnikov K, Bertrand KC, Wang X, Erkek S, Federation A, Song A, Lee C, Wang X, McDonald L, Morrow JJ, Saiakhova A, Sin-Chan P, ... ... Li Y, et al. Therapeutic targeting of ependymoma as informed by oncogenic enhancer profiling. Nature. PMID 29258295 DOI: 10.1038/Nature25169 |
0.307 |
|
2017 |
Li Y, Yan J, Ding W, Chen Y, Pack LM, Chen T. Genotoxicity and gene expression analyses of liver and lung tissues of mice treated with titanium dioxide nanoparticles. Mutagenesis. 32: 33-46. PMID 28011748 DOI: 10.1093/mutage/gew065 |
0.443 |
|
2016 |
Li Y, Doak SH, Yan J, Chen DH, Zhou M, Mittelstaedt RA, Chen Y, Li C, Chen T. Factors affecting the in vitro micronucleus assay for evaluation of nanomaterials. Mutagenesis. PMID 27567283 DOI: 10.1093/mutage/gew040 |
0.442 |
|
2016 |
Guo X, Li Y, Yan J, Ingle T, Jones MY, Mei N, Boudreau MD, Cunningham CK, Abbas M, Paredes A, Zhou T, Moore MM, Howard PC, Chen T. Size- and coating-dependent cytotoxicity and genotoxicity of silver nanoparticles evaluated using in vitro standard assays. Nanotoxicology. 1-48. PMID 27441588 DOI: 10.1080/17435390.2016.1214764 |
0.438 |
|
2016 |
Li Y, Qin T, Ingle T, Yan J, He W, Yin JJ, Chen T. Differential genotoxicity mechanisms of silver nanoparticles and silver ions. Archives of Toxicology. PMID 27180073 DOI: 10.1007/S00204-016-1730-Y |
0.416 |
|
2015 |
Wang A, Yue F, Li Y, Xie R, Harper T, Patel NA, Muth K, Palmer J, Qiu Y, Wang J, Lam DK, Raum JC, Stoffers DA, Ren B, Sander M. Epigenetic priming of enhancers predicts developmental competence of hESC-derived endodermal lineage intermediates. Cell Stem Cell. 16: 386-99. PMID 25842977 DOI: 10.1016/J.Stem.2015.02.013 |
0.665 |
|
2014 |
Li Y, Rivera CM, Ishii H, Jin F, Selvaraj S, Lee AY, Dixon JR, Ren B. CRISPR reveals a distal super-enhancer required for Sox2 expression in mouse embryonic stem cells. Plos One. 9: e114485. PMID 25486255 DOI: 10.1371/Journal.Pone.0114485 |
0.768 |
|
2014 |
Chen T, Yan J, Li Y. Genotoxicity of titanium dioxide nanoparticles. Journal of Food and Drug Analysis. 22: 95-104. PMID 24673907 DOI: 10.1016/j.jfda.2014.01.008 |
0.448 |
|
2014 |
Li Y, Bhalli JA, Ding W, Yan J, Pearce MG, Sadiq R, Cunningham CK, Jones MY, Monroe WA, Howard PC, Zhou T, Chen T. Cytotoxicity and genotoxicity assessment of silver nanoparticles in mouse. Nanotoxicology. 8: 36-45. PMID 24266757 DOI: 10.3109/17435390.2013.855827 |
0.418 |
|
2013 |
Jin F, Li Y, Dixon JR, Selvaraj S, Ye Z, Lee AY, Yen CA, Schmitt AD, Espinoza CA, Ren B. A high-resolution map of the three-dimensional chromatin interactome in human cells. Nature. 503: 290-4. PMID 24141950 DOI: 10.1038/Nature12644 |
0.774 |
|
2013 |
Xie W, Schultz MD, Lister R, Hou Z, Rajagopal N, Ray P, Whitaker JW, Tian S, Hawkins RD, Leung D, Yang H, Wang T, Lee AY, Swanson SA, Zhang J, ... ... Li Y, et al. Epigenomic analysis of multilineage differentiation of human embryonic stem cells. Cell. 153: 1134-48. PMID 23664764 DOI: 10.1016/J.Cell.2013.04.022 |
0.666 |
|
2013 |
Meng F, Yan J, Li Y, Fu PP, Fossom LH, Sood RK, Mans DJ, Chu PI, Moore MM, Chen T. Genotoxicity of 2-bromo-3'-chloropropiophenone. Toxicology and Applied Pharmacology. 270: 158-63. PMID 23628427 DOI: 10.1016/j.taap.2013.04.012 |
0.407 |
|
2013 |
Rajagopal N, Xie W, Li Y, Wagner U, Wang W, Stamatoyannopoulos J, Ernst J, Kellis M, Ren B. RFECS: a random-forest based algorithm for enhancer identification from chromatin state. Plos Computational Biology. 9: e1002968. PMID 23526891 DOI: 10.1371/Journal.Pcbi.1002968 |
0.613 |
|
2012 |
Woodruff RS, Li Y, Yan J, Bishop M, Jones MY, Watanabe F, Biris AS, Rice P, Zhou T, Chen T. Genotoxicity evaluation of titanium dioxide nanoparticles using the Ames test and Comet assay. Journal of Applied Toxicology : Jat. 32: 934-43. PMID 22744910 DOI: 10.1002/Jat.2781 |
0.423 |
|
2012 |
Sadiq R, Bhalli JA, Yan J, Woodruff RS, Pearce MG, Li Y, Mustafa T, Watanabe F, Pack LM, Biris AS, Khan QM, Chen T. Genotoxicity of TiO(2) anatase nanoparticles in B6C3F1 male mice evaluated using Pig-a and flow cytometric micronucleus assays. Mutation Research. 745: 65-72. PMID 22712079 DOI: 10.1016/J.Mrgentox.2012.02.002 |
0.41 |
|
2012 |
Dixon JR, Selvaraj S, Yue F, Kim A, Li Y, Shen Y, Hu M, Liu JS, Ren B. Topological domains in mammalian genomes identified by analysis of chromatin interactions. Nature. 485: 376-80. PMID 22495300 DOI: 10.1038/Nature11082 |
0.757 |
|
2011 |
Jin F, Li Y, Ren B, Natarajan R. Enhancers: multi-dimensional signal integrators. Transcription. 2: 226-30. PMID 22231119 DOI: 10.4161/trns.2.5.17712 |
0.735 |
|
2011 |
Jin F, Li Y, Ren B, Natarajan R. PU.1 and C/EBP(alpha) synergistically program distinct response to NF-kappaB activation through establishing monocyte specific enhancers. Proceedings of the National Academy of Sciences of the United States of America. 108: 5290-5. PMID 21402921 DOI: 10.1073/Pnas.1017214108 |
0.743 |
|
2008 |
Li Y, Reddy MA, Miao F, Shanmugam N, Yee JK, Hawkins D, Ren B, Natarajan R. Role of the histone H3 lysine 4 methyltransferase, SET7/9, in the regulation of NF-kappaB-dependent inflammatory genes. Relevance to diabetes and inflammation. The Journal of Biological Chemistry. 283: 26771-81. PMID 18650421 DOI: 10.1074/Jbc.M802800200 |
0.485 |
|
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