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Jie Qiu - Publications

Affiliations: 
Shanghai Normal University 
Area:
Plant genomics, population genetics
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37 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Chen J, Tan C, Zhu M, Zhang C, Wang Z, Ni X, Liu Y, Wei T, Wei X, Fang X, Xu Y, Huang X, Qiu J, Liu H. CropGS-Hub: a comprehensive database of genotype and phenotype resources for genomic prediction in major crops. Nucleic Acids Research. PMID 38000385 DOI: 10.1093/nar/gkad1062  0.349
2023 Feng Y, Comes HP, Chen J, Zhu S, Lu R, Zhang X, Li P, Qiu J, Olsen KM, Qiu Y. Genome sequences and population genomics provide insights into the demographic history, inbreeding, and mutation load of two 'living fossil' tree species of Dipteronia. The Plant Journal : For Cell and Molecular Biology. PMID 37797086 DOI: 10.1111/tpj.16486  0.562
2023 Sultana MH, Alamin M, Qiu J, Fan L, Ye C. Transcriptomic profiling reveals candidate allelopathic genes in rice responsible for interactions with barnyardgrass. Frontiers in Plant Science. 14: 1104951. PMID 36875579 DOI: 10.3389/fpls.2023.1104951  0.609
2022 Zhu M, Cheng Y, Wu S, Huang X, Qiu J. Deleterious mutations are characterized by higher genomic heterozygosity than other genic variants in plant genomes. Genomics. 114: 110290. PMID 35124173 DOI: 10.1016/j.ygeno.2022.110290  0.312
2022 Wu D, Shen E, Jiang B, Feng Y, Tang W, Lao S, Jia L, Lin HY, Xie L, Weng X, Dong C, Qian Q, Lin F, Xu H, Lu H, ... ... Qiu J, et al. Genomic insights into the evolution of Echinochloa species as weed and orphan crop. Nature Communications. 13: 689. PMID 35115514 DOI: 10.1038/s41467-022-28359-9  0.741
2022 Wu D, Qiu J, Sun J, Song BK, Olsen KM, Fan L. Weedy rice, a hidden gold mine in the paddy field. Molecular Plant. PMID 35032686 DOI: 10.1016/j.molp.2022.01.008  0.614
2022 Yan N, Yang T, Yu XT, Shang LG, Guo DP, Zhang Y, Meng L, Qi QQ, Li YL, Du YM, Liu XM, Yuan XL, Qin P, Qiu J, Qian Q, et al. Chromosome-level genome assembly of Zizania latifolia provides insights into its seed shattering and phytocassane biosynthesis. Communications Biology. 5: 36. PMID 35017643 DOI: 10.1038/s42003-021-02993-3  0.437
2021 Sun Y, Shen E, Hu Y, Wu D, Feng Y, Lao S, Dong C, Du T, Hua W, Ye CY, Zhu J, Zhu QH, Cai D, Skuza L, Qiu J, et al. Population genomic analysis reveals domestication of cultivated rye from weedy rye. Molecular Plant. PMID 34971791 DOI: 10.1016/j.molp.2021.12.015  0.692
2021 Chen R, Deng Y, Ding Y, Guo J, Qiu J, Wang B, Wang C, Xie Y, Zhang Z, Chen J, Chen L, Chu C, He G, He Z, Huang X, et al. Rice functional genomics: decades' efforts and roads ahead. Science China. Life Sciences. PMID 34881420 DOI: 10.1007/s11427-021-2024-0  0.401
2021 Wei X, Qiu J, Yong K, Fan J, Zhang Q, Hua H, Liu J, Wang Q, Olsen KM, Han B, Huang X. A quantitative genomics map of rice provides genetic insights and guides breeding. Nature Genetics. PMID 33526925 DOI: 10.1038/s41588-020-00769-9  0.613
2021 Chen M, Fan W, Ji F, Hua H, Liu J, Yan M, Ma Q, Fan J, Wang Q, Zhang S, Liu G, Sun Z, Tian C, Zhao F, Zheng J, ... ... Qiu J, et al. Genome-wide Identification of Agronomically Important Genes in Outcrossing Crops using OutcrossSeq. Molecular Plant. PMID 33429094 DOI: 10.1016/j.molp.2021.01.003  0.404
2020 Ye CY, Wu D, Mao L, Jia L, Qiu J, Lao S, Chen M, Jiang B, Tang W, Peng Q, Pan L, Wang L, Feng X, Guo L, Zhang C, et al. The genomes of the allohexaploid Echinochloa crus-galli and its progenitors provide insights into polyploidization-driven adaptation. Molecular Plant. PMID 32622997 DOI: 10.1016/J.Molp.2020.07.001  0.73
2020 Lv Q, Qiu J, Liu J, Li Z, Zhang W, Wang Q, Fang J, Pan J, Chen Z, Cheng W, Barker MS, Huang X, Wei X, Cheng K. The Chimonanthus salicifolius genome provides insight into magnoliids evolution and flavonoids biosynthesis. The Plant Journal : For Cell and Molecular Biology. PMID 32524692 DOI: 10.1111/Tpj.14874  0.515
2020 Mao L, Kawaide H, Higuchi T, Chen M, Miyamoto K, Hirata Y, Kimura H, Miyazaki S, Teruya M, Fujiwara K, Tomita K, Yamane H, Hayashi KI, Nojiri H, Jia L, ... Qiu J, et al. Genomic evidence for convergent evolution of gene clusters for momilactone biosynthesis in land plants. Proceedings of the National Academy of Sciences of the United States of America. PMID 32409606 DOI: 10.1073/Pnas.1914373117  0.686
2020 Qiu J, Jia L, Wu D, Weng X, Chen L, Sun J, Chen M, Mao L, Jiang B, Ye C, Turra GM, Guo L, Ye G, Zhu QH, Imaizumi T, et al. Diverse genetic mechanisms underlie worldwide convergent rice feralization. Genome Biology. 21: 70. PMID 32213201 DOI: 10.1186/S13059-020-01980-X  0.703
2020 Zhang W, Liu J, Zhang Y, Qiu J, Li Y, Zheng B, Hu F, Dai S, Huang X. A high-quality genome sequence of alkaligrass provides insights into halophyte stress tolerance. Science China. Life Sciences. PMID 32180108 DOI: 10.1007/S11427-020-1662-X  0.489
2019 Mao L, Chen M, Chu Q, Jia L, Sultana MH, Wu D, Kong X, Qiu J, Ye CY, Zhu QH, Chen X, Fan L. RiceRelativesGD: a genomic database of rice relatives for rice research. Database : the Journal of Biological Databases and Curation. 2019. PMID 31560050 DOI: 10.1093/database/baz110  0.671
2019 Ye CY, Tang W, Wu D, Jia L, Qiu J, Chen M, Mao L, Lin F, Xu H, Yu X, Lu Y, Wang Y, Olsen KM, Timko MP, Fan L. Genomic evidence of human selection on Vavilovian mimicry. Nature Ecology & Evolution. PMID 31527731 DOI: 10.1038/S41559-019-0976-1  0.736
2019 Chen X, Liu F, Liu L, Qiu J, Fang D, Wang W, Zhang X, Ye C, Timko MP, Zhu QH, Fan L, Xiao B. Characterization and evolution of gene clusters for terpenoid phytoalexin biosynthesis in tobacco. Planta. PMID 31414203 DOI: 10.1007/S00425-019-03255-7  0.618
2019 Sultana MH, Liu F, Alamin M, Mao L, Jia L, Chen H, Wu D, Wang Y, Fu F, Wu S, Wang W, Ye C, Zhu QH, Qiu J, Fan L. Gene Modules Co-regulated with Biosynthetic Gene Clusters for Allelopathy between Rice and Barnyardgrass. International Journal of Molecular Sciences. 20. PMID 31394718 DOI: 10.3390/ijms20163846  0.588
2019 Wu S, Qiu J, Gao Q. QTL-BSA: A Bulked Segregant Analysis and Visualization Pipeline for QTL-seq. Interdisciplinary Sciences, Computational Life Sciences. PMID 31388943 DOI: 10.1007/s12539-019-00344-9  0.343
2019 Zou J, Mao L, Qiu J, Wang M, Jia L, Wu D, He Z, Chen M, Shen Y, Shen E, Huang Y, Li R, Hu D, Shi L, Wang K, et al. Genome-wide selection footprints and deleterious variations in young Asian allotetraploid rapeseed. Plant Biotechnology Journal. PMID 30947395 DOI: 10.1111/pbi.13115  0.665
2018 Xia H, Luo Z, Xiong J, Ma X, Lou Q, Wei H, Qiu J, Yang H, Liu G, Fan L, Chen L, Luo L. Bi-directional selection in upland rice leads to its adaptive differentiation from lowland rice on drought resistance and productivity. Molecular Plant. PMID 30584948 DOI: 10.1016/j.molp.2018.12.011  0.59
2018 Guo L, Qiu J, Li LF, Lu B, Olsen K, Fan L. Genomic Clues for Crop-Weed Interactions and Evolution. Trends in Plant Science. PMID 30293809 DOI: 10.1016/J.Tplants.2018.09.009  0.704
2018 Jia HM, Jia HJ, Cai QL, Wang Y, Zhao HB, Yang WF, Wang GY, Li YH, Zhan DL, Shen YT, Niu QF, Chang L, Qiu J, Zhao L, Xie HB, et al. The red bayberry genome and genetic basis of sex determination. Plant Biotechnology Journal. PMID 29992702 DOI: 10.1111/pbi.12985  0.608
2017 Guo L, Qiu J, Ye C, Jin G, Mao L, Zhang H, Yang X, Peng Q, Wang Y, Jia L, Lin Z, Li G, Fu F, Liu C, Chen L, et al. Echinochloa crus-galli genome analysis provides insight into its adaptation and invasiveness as a weed. Nature Communications. 8: 1031. PMID 29044108 DOI: 10.1038/S41467-017-01067-5  0.666
2017 Qiu J, Zhou Y, Mao L, Ye C, Wang W, Zhang J, Yu Y, Fu F, Wang Y, Qian F, Qi T, Wu S, Sultana MH, Cao YN, Wang Y, et al. Genomic variation associated with local adaptation of weedy rice during de-domestication. Nature Communications. 8: 15323. PMID 28537247 DOI: 10.1038/Ncomms15323  0.677
2017 Sun YH, Hung CY, Qiu J, Chen J, Kittur FS, Oldham CE, Henny RJ, Burkey KO, Fan L, Xie J. Accumulation of high OPDA level correlates with reduced ROS and elevated GSH benefiting white cell survival in variegated leaves. Scientific Reports. 7: 44158. PMID 28276518 DOI: 10.1038/Srep44158  0.561
2016 Hung CY, Qiu J, Sun YH, Chen J, Kittur FS, Henny RJ, Jin G, Fan L, Xie J. Gibberellin deficiency is responsible for shy-flowering nature of Epipremnum aureum. Scientific Reports. 6: 28598. PMID 27345283 DOI: 10.1038/Srep28598  0.565
2015 Shen E, Zou J, Hubertus Behrens F, Chen L, Ye C, Dai S, Li R, Ni M, Jiang X, Qiu J, Liu Y, Wang W, Zhu QH, Chalhoub B, Bancroft I, et al. Identification, evolution, and expression partitioning of miRNAs in allopolyploid Brassica napus. Journal of Experimental Botany. PMID 26357884 DOI: 10.1093/jxb/erv420  0.585
2015 Li F, Wang W, Zhao N, Xiao B, Cao P, Wu X, Ye C, Shen E, Qiu J, Zhu QH, Xie J, Zhou X, Fan L. Regulation of Nicotine Biosynthesis by an Endogenous Target Mimicry of miRNA in Tobacco. Plant Physiology. PMID 26246450 DOI: 10.1104/pp.15.00649  0.556
2015 Guo L, Qiu J, Han Z, Ye Z, Chen C, Liu C, Xin X, Ye CY, Wang YY, Xie H, Wang Y, Bao J, Tang S, Xu J, Gui Y, et al. A host plant genome (Zizania latifolia) after a century-long endophyte infection. The Plant Journal : For Cell and Molecular Biology. PMID 26072920 DOI: 10.1111/Tpj.12912  0.63
2014 Ye CY, Xu H, Shen E, Liu Y, Wang Y, Shen Y, Qiu J, Zhu QH, Fan L. Genome-wide identification of non-coding RNAs interacted with microRNAs in soybean. Frontiers in Plant Science. 5: 743. PMID 25566308 DOI: 10.3389/fpls.2014.00743  0.563
2014 Ye CY, Lin Z, Li G, Wang YY, Qiu J, Fu F, Zhang H, Chen L, Ye S, Song W, Jin G, Zhu J, Lu Y, Guo L, Fan L. Echinochloa chloroplast genomes: insights into the evolution and taxonomic identification of two weedy species. Plos One. 9: e113657. PMID 25427255 DOI: 10.1371/journal.pone.0113657  0.664
2014 Qiu J, Wang Y, Wu S, Wang YY, Ye CY, Bai X, Li Z, Yan C, Wang W, Wang Z, Shu Q, Xie J, Lee SH, Fan L. Genome re-sequencing of semi-wild soybean reveals a complex Soja population structure and deep introgression. Plos One. 9: e108479. PMID 25265539 DOI: 10.1371/journal.pone.0108479  0.58
2014 Qiu J, Zhu J, Fu F, Ye CY, Wang W, Mao L, Lin Z, Chen L, Zhang H, Guo L, Qiang S, Lu Y, Fan L. Genome re-sequencing suggested a weedy rice origin from domesticated indica-japonica hybridization: a case study from southern China. Planta. 240: 1353-63. PMID 25187076 DOI: 10.1007/s00425-014-2159-2  0.671
2013 Hung CY, Fan L, Kittur FS, Sun K, Qiu J, Tang S, Holliday BM, Xiao B, Burkey KO, Bush LP, Conkling MA, Roje S, Xie J. Alteration of the alkaloid profile in genetically modified tobacco reveals a role of methylenetetrahydrofolate reductase in nicotine N-demethylation. Plant Physiology. 161: 1049-60. PMID 23221678 DOI: 10.1104/Pp.112.209247  0.53
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