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Chuanle Xiao - Publications

Affiliations: 
Sun Yat-sen University, Guangzhou Shi, Guangdong Sheng, China 
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24 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Xie S, Leung AW, Zheng Z, Zhang D, Xiao C, Luo R, Luo M, Zhang S. Applications and potentials of nanopore sequencing in the (epi)genome and (epi)transcriptome era. Innovation (New York, N.Y.). 2: 100153. PMID 34901902 DOI: 10.1016/j.xinn.2021.100153  0.581
2019 Xie SQ, Xing JF, Zhang XM, Liu ZY, Luan MW, Zhu J, Ling P, Xiao CL, Song XQ, Zheng J, Chen Y. -Methyladenine DNA Modification in the Woodland Strawberry () Genome Reveals a Positive Relationship With Gene Transcription. Frontiers in Genetics. 10: 1288. PMID 31998359 DOI: 10.3389/Fgene.2019.01288  0.384
2019 Liu ZY, Xing JF, Chen W, Luan MW, Xie R, Huang J, Xie SQ, Xiao CL. MDR: an integrative DNA N6-methyladenine and N4-methylcytosine modification database for Rosaceae. Horticulture Research. 6: 78. PMID 31240103 DOI: 10.1038/S41438-019-0160-4  0.365
2019 Luan MW, Chen W, Xing JF, Xiao CL, Chen Y, Xie SQ. DNA N6-Methyladenosine modification role in transmitted variations from genomic DNA to RNA in Herrania umbratica. Bmc Genomics. 20: 508. PMID 31215402 DOI: 10.1186/S12864-019-5776-0  0.355
2019 Liu Q, Fang L, Yu G, Wang D, Xiao CL, Wang K. Detection of DNA base modifications by deep recurrent neural network on Oxford Nanopore sequencing data. Nature Communications. 10: 2449. PMID 31164644 DOI: 10.1038/S41467-019-10168-2  0.4
2019 Ni P, Huang N, Zhang Z, Wang DP, Liang F, Miao Y, Xiao CL, Luo F, Wang J. DeepSignal: detecting DNA methylation state from Nanopore sequencing reads using deep-learning. Bioinformatics (Oxford, England). PMID 30994904 DOI: 10.1093/Bioinformatics/Btz276  0.329
2018 Xie SQ, Han Y, Chen XZ, Cao TY, Ji KK, Zhu J, Ling P, Xiao CL. ISOdb: A Comprehensive Database of Full-Length Isoforms Generated by Iso-Seq. International Journal of Genomics. 2018: 9207637. PMID 30581839 DOI: 10.1155/2018/9207637  0.342
2018 Xiao CL, Xie SQ, Xie QB, Liu ZY, Xing JF, Ji KK, Tao J, Dai LY, Luo F. N6-Methyladenine DNA modification in Xanthomonas oryzae pv. oryzicola genome. Scientific Reports. 8: 16272. PMID 30389999 DOI: 10.1038/S41598-018-34559-5  0.34
2018 Xiao CL, Zhu S, He M, Chen, Zhang Q, Chen Y, Yu G, Liu J, Xie SQ, Luo F, Liang Z, Wang DP, Bo XC, Gu XF, Wang K, et al. N-Methyladenine DNA Modification in the Human Genome. Molecular Cell. PMID 30017583 DOI: 10.1016/J.Molcel.2018.06.015  0.355
2017 Xiao CL, Chen Y, Xie SQ, Chen KN, Wang Y, Han Y, Luo F, Xie Z. MECAT: fast mapping, error correction, and de novo assembly for single-molecule sequencing reads. Nature Methods. PMID 28945707 DOI: 10.1038/Nmeth.4432  0.318
2017 Mai Z, Xiao C, Jin J, Zhang G. Low-cost, Low-bias and Low-input RNA-seq with High Experimental Verifiability based on Semiconductor Sequencing. Scientific Reports. 7: 1053. PMID 28432352 DOI: 10.1038/S41598-017-01165-W  0.338
2016 Ye P, Luan Y, Chen K, Liu Y, Xiao C, Xie Z. MethSMRT: an integrative database for DNA N6-methyladenine and N4-methylcytosine generated by single-molecular real-time sequencing. Nucleic Acids Research. PMID 27924023 DOI: 10.1093/Nar/Gkw950  0.384
2014 Xiao CL, Mai ZB, Lian XL, Zhong JY, Jin JJ, He QY, Zhang G. FANSe2: a robust and cost-efficient alignment tool for quantitative next-generation sequencing applications. Plos One. 9: e94250. PMID 24743329 DOI: 10.1371/Journal.Pone.0094250  0.342
2014 Tian M, Chen X, Xiong Q, Xiong J, Xiao C, Ge F, Yang F, Miao W. Phosphoproteomic analysis of protein phosphorylation networks in Tetrahymena thermophila, a model single-celled organism. Molecular & Cellular Proteomics : McP. 13: 503-19. PMID 24200585 DOI: 10.1074/Mcp.M112.026575  0.343
2013 Xiao CL, Chen XZ, Du YL, Sun X, Zhang G, He QY. Binomial probability distribution model-based protein identification algorithm for tandem mass spectrometry utilizing peak intensity information. Journal of Proteome Research. 12: 328-35. PMID 23163785 DOI: 10.1021/Pr300781T  0.305
2012 Zhang G, Fedyunin I, Kirchner S, Xiao C, Valleriani A, Ignatova Z. FANSe: an accurate algorithm for quantitative mapping of large scale sequencing reads. Nucleic Acids Research. 40: e83. PMID 22379138 DOI: 10.1093/Nar/Gks196  0.39
2011 Sun X, Jia HL, Xiao CL, Yin XF, Yang XY, Lu J, He X, Li N, Li H, He QY. Bacterial proteome of streptococcus pneumoniae through multidimensional separations coupled with LC-MS/MS. Omics : a Journal of Integrative Biology. 15: 477-82. PMID 21699404 DOI: 10.1089/Omi.2010.0113  0.337
2011 Ge R, Sun X, Xiao C, Yin X, Shan W, Chen Z, He QY. Phosphoproteome analysis of the pathogenic bacterium Helicobacter pylori reveals over-representation of tyrosine phosphorylation and multiply phosphorylated proteins. Proteomics. 11: 1449-61. PMID 21360674 DOI: 10.1002/Pmic.201000649  0.315
2011 Yan GR, Ding W, Xu SH, Xu Z, Xiao CL, Yin XF, He QY. Characterization of phosphoproteins in gastric cancer secretome. Omics : a Journal of Integrative Biology. 15: 83-90. PMID 20726782 DOI: 10.1089/Omi.2010.0056  0.327
2010 Ge F, Xiao CL, Yin XF, Lu CH, Zeng HL, He QY. Phosphoproteomic analysis of primary human multiple myeloma cells. Journal of Proteomics. 73: 1381-90. PMID 20230923 DOI: 10.1016/J.Jprot.2010.03.004  0.325
2010 Yan GR, Xiao CL, He GW, Yin XF, Chen NP, Cao Y, He QY. Global phosphoproteomic effects of natural tyrosine kinase inhibitor, genistein, on signaling pathways. Proteomics. 10: 976-86. PMID 20049867 DOI: 10.1002/Pmic.200900662  0.302
2010 Sun X, Ge F, Xiao CL, Yin XF, Ge R, Zhang LH, He QY. Phosphoproteomic analysis reveals the multiple roles of phosphorylation in pathogenic bacterium Streptococcus pneumoniae. Journal of Proteome Research. 9: 275-82. PMID 19894762 DOI: 10.1021/Pr900612V  0.344
2010 Lu C, Ge F, Liu Z, Li R, Xiao C, Zeng H, Lu X, He Q. Detection of Abundant Proteins in Multiple Myeloma Cells by Proteomics Journal of Proteomics & Bioinformatics. 3: 005-009. DOI: 10.4172/Jpb.1000115  0.348
2009 Xiao CL, Zhang ZP, Xiong S, Lu CH, Wei HP, Zeng HL, Liu Z, Zhang XE, Ge F. Comparative proteomic analysis to discover potential therapeutic targets in human multiple myeloma. Proteomics. Clinical Applications. 3: 1348-60. PMID 21136955 DOI: 10.1002/Prca.200900068  0.337
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