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Bing Liu, Ph.D. - Publications

2014- Computational and Systems Biology University of Pittsburgh, Pittsburgh, PA, United States 
formal methods, systems biology,

21 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Chen F, Shi Q, Pei F, Vogt A, Porritt RA, Garcia G, Gomez AC, Cheng MH, Schurdak ME, Liu B, Chan SY, Arumugaswami V, Stern AM, Taylor DL, Arditi M, et al. A systems-level study reveals host-targeted repurposable drugs against SARS-CoV-2 infection. Molecular Systems Biology. 17: e10239. PMID 34339582 DOI: 10.15252/msb.202110239  0.426
2020 Shi Q, Pei F, Silverman GA, Pak SC, Perlmutter DH, Liu B, Bahar I. Mechanisms of Action of Autophagy Modulators Dissected by Quantitative Systems Pharmacology Analysis. International Journal of Molecular Sciences. 21. PMID 32325894 DOI: 10.3390/Ijms21082855  0.526
2020 Thermozier S, Hou W, Zhang X, Shields D, Fisher R, Bayir H, Kagan V, Yu J, Liu B, Bahar I, Epperly MW, Wipf P, Wang H, Huq MS, Greenberger JS. Anti-Ferroptosis Drug Enhances Total-Body Irradiation Mitigation by Drugs that Block Apoptosis and Necroptosis. Radiation Research. PMID 32134361 DOI: 10.1667/Rr15486.1  0.469
2020 Kapralov AA, Yang Q, Dar HH, Tyurina YY, Anthonymuthu TS, Kim R, St Croix CM, Mikulska-Ruminska K, Liu B, Shrivastava IH, Tyurin VA, Ting HC, Wu YL, Gao Y, Shurin GV, et al. Redox lipid reprogramming commands susceptibility of macrophages and microglia to ferroptotic death. Nature Chemical Biology. 16: 278-290. PMID 32080625 DOI: 10.1038/S41589-019-0462-8  0.466
2019 Thermozier S, Zhang X, Hou W, Fisher R, Epperly MW, Liu B, Bahar I, Wang H, Greenberger JS. Radioresistance of Serpinb3a-/- Mice and Derived Hematopoietic and Marrow Stromal Cell Lines. Radiation Research. PMID 31295086 DOI: 10.1667/Rr15379.1  0.455
2019 Pei F, Li H, Liu B, Bahar I. Quantitative Systems Pharmacological Analysis of Drugs of Abuse Reveals the Pleiotropy of Their Targets and the Effector Role of mTORC1. Frontiers in Pharmacology. 10: 191. PMID 30906261 DOI: 10.3389/Fphar.2019.00191  0.491
2017 Liu B, Oltvai ZN, Bayır H, Silverman GA, Pak SC, Perlmutter DH, Bahar I. Quantitative assessment of cell fate decision between autophagy and apoptosis. Scientific Reports. 7: 17605. PMID 29242632 DOI: 10.1038/S41598-017-18001-W  0.507
2017 Steinman J, Epperly M, Hou W, Willis J, Wang H, Fisher R, Liu B, Bahar I, McCaw T, Kagan V, Bayir H, Yu J, Wipf P, Li S, Huq MS, et al. Improved Total-Body Irradiation Survival by Delivery of Two Radiation Mitigators that Target Distinct Cell Death Pathways. Radiation Research. PMID 29140165 DOI: 10.1667/Rr14787.1  0.471
2016 Kagan VE, Mao G, Qu F, Angeli JP, Doll S, Croix CS, Dar HH, Liu B, Tyurin VA, Ritov VB, Kapralov AA, Amoscato AA, Jiang J, Anthonymuthu T, Mohammadyani D, et al. Oxidized arachidonic and adrenic PEs navigate cells to ferroptosis. Nature Chemical Biology. PMID 27842066 DOI: 10.1038/Nchembio.2238  0.475
2016 Liu B, Liu Q, Yang L, Palaniappan SK, Bahar I, Thiagarajan PS, Ding JL. Innate immune memory and homeostasis may be conferred through crosstalk between the TLR3 and TLR7 pathways. Science Signaling. 9: ra70. PMID 27405980 DOI: 10.1126/Scisignal.Aac9340  0.65
2015 Liu B, Kong S, Gao S, Zuliani P, Clarke EM. Towards personalized prostate cancer therapy using delta-reachability analysis Proceedings of the 18th International Conference On Hybrid Systems: Computation and Control, Hscc 2015. 227-232. DOI: 10.1145/2728606.2728634  0.467
2015 Kaya C, Liu B, Faeder JR, Bahar I. Unified Model of Synaptic Transmission Biophysical Journal. 108: 155a. DOI: 10.1016/J.Bpj.2014.11.852  0.451
2015 Gyori BM, Liu B, Paul S, Ramanathan R, Thiagarajan PS. Approximate probabilistic verification of hybrid systems Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 9271: 96-116. DOI: 10.1007/978-3-319-26916-0_6  0.542
2014 Liu B, Bhatt D, Oltvai ZN, Greenberger JS, Bahar I. Significance of p53 dynamics in regulating apoptosis in response to ionizing radiation, and polypharmacological strategies. Scientific Reports. 4: 6245. PMID 25175563 DOI: 10.1038/Srep06245  0.49
2013 Hagiescu A, Liu B, Ramanathan R, Palaniappan SK, Cui Z, Chattopadhyay B, Thiagarajan PS, Wong W. GPU code generation for ODE-based applications with phased shared-data access patterns Acm Transactions On Architecture and Code Optimization. 10: 55. DOI: 10.1145/2541228.2555311  0.614
2013 Palaniappan SK, Gyori BM, Liu B, Hsu D, Thiagarajan PS. Statistical model checking based calibration and analysis of bio-pathway models Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 8130: 120-134. DOI: 10.1007/978-3-642-40708-6_10  0.677
2012 Liu B, Thiagarajan PS. Modeling and analysis of biopathways dynamics. Journal of Bioinformatics and Computational Biology. 10: 1231001. PMID 22809413 DOI: 10.1142/S0219720012310014  0.623
2012 Palaniappan SK, Akshay S, Liu B, Genest B, Thiagarajan PS. A hybrid Factored Frontier algorithm for Dynamic Bayesian Networks with a biopathways application. Ieee/Acm Transactions On Computational Biology and Bioinformatics. 9: 1352-65. PMID 22529330 DOI: 10.1109/Tcbb.2012.60  0.594
2012 Liu B, Hagiescu A, Palaniappan SK, Chattopadhyay B, Cui Z, Wong WF, Thiagarajan PS. Approximate probabilistic analysis of biopathway dynamics. Bioinformatics (Oxford, England). 28: 1508-16. PMID 22492313 DOI: 10.1093/Bioinformatics/Bts166  0.624
2011 Liu B, Zhang J, Tan PY, Hsu D, Blom AM, Leong B, Sethi S, Ho B, Ding JL, Thiagarajan PS. A computational and experimental study of the regulatory mechanisms of the complement system. Plos Computational Biology. 7: e1001059. PMID 21283780 DOI: 10.1371/Journal.Pcbi.1001059  0.688
2011 Liu B, Hsu D, Thiagarajan PS. Probabilistic approximations of ODEs based bio-pathway dynamics Theoretical Computer Science. 412: 2188-2206. DOI: 10.1016/J.Tcs.2011.01.021  0.688
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