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Kaushik Ragunathan - Publications

Affiliations: 
University of Michigan, Ann Arbor, Ann Arbor, MI 
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22 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Ames A, Seman M, Larkin A, Raiymbek G, Chen Z, Levashkevich A, Biteen JS, Ragunathan K. Identification of a novel, tunable interface in the HP1 protein, Swi6, that underpins epigenetic inheritance. Biorxiv : the Preprint Server For Biology. PMID 38077059 DOI: 10.1101/2023.11.28.569027  0.341
2023 Seman M, Levashkevich A, Larkin A, Huang F, Ragunathan K. Uncoupling the distinct functions of HP1 proteins during heterochromatin establishment and maintenance. Biorxiv : the Preprint Server For Biology. PMID 37961629 DOI: 10.1101/2023.04.30.538869  0.337
2023 Seman M, Levashkevich A, Larkin A, Huang F, Ragunathan K. Uncoupling the distinct functions of HP1 proteins during heterochromatin establishment and maintenance. Cell Reports. 42: 113428. PMID 37952152 DOI: 10.1016/j.celrep.2023.113428  0.326
2023 Moritz L, Schon SB, Rabbani M, Sheng Y, Agrawal R, Glass-Klaiber J, Sultan C, Camarillo JM, Clements J, Baldwin MR, Diehl AG, Boyle AP, O'Brien PJ, Ragunathan K, Hu YC, et al. Sperm chromatin structure and reproductive fitness are altered by substitution of a single amino acid in mouse protamine 1. Nature Structural & Molecular Biology. PMID 37460896 DOI: 10.1038/s41594-023-01033-4  0.306
2023 Chen Z, Seman M, Farhat A, Fyodorova Y, Biswas S, Levashkevich A, Freddolino PL, Biteen JS, Ragunathan K. H3K9 methylation enhances HP1-associated epigenetic silencing complex assembly and suppresses off-chromatin binding. Biorxiv : the Preprint Server For Biology. PMID 36945633 DOI: 10.1101/2023.03.08.531771  0.69
2022 Biswas S, Chen Z, Karslake JD, Farhat A, Ames A, Raiymbek G, Freddolino PL, Biteen JS, Ragunathan K. HP1 oligomerization compensates for low-affinity H3K9me recognition and provides a tunable mechanism for heterochromatin-specific localization. Science Advances. 8: eabk0793. PMID 35857444 DOI: 10.1126/sciadv.abk0793  0.691
2022 Larkin A, Ames A, Seman M, Ragunathan K. Investigating Mitotic Inheritance of Histone Modifications Using Tethering Strategies. Methods in Molecular Biology (Clifton, N.J.). 2529: 419-440. PMID 35733025 DOI: 10.1007/978-1-0716-2481-4_18  0.383
2020 Raiymbek G, An S, Khurana N, Gopinath S, Larkin A, Biswas S, Trievel RC, Cho US, Ragunathan K. An H3K9 methylation dependent protein interaction regulates the non-enzymatic function of a putative histone demethylase. Elife. 9. PMID 32195666 DOI: 10.7554/eLife.53155  0.666
2017 Abeysirigunawardena SC, Kim H, Lai J, Ragunathan K, Rappé MC, Luthey-Schulten Z, Ha T, Woodson SA. Evolution of protein-coupled RNA dynamics during hierarchical assembly of ribosomal complexes. Nature Communications. 8: 492. PMID 28887451 DOI: 10.1038/S41467-017-00536-1  0.541
2015 Ragunathan K, Jih G, Moazed D. Epigenetics. Epigenetic inheritance uncoupled from sequence-specific recruitment. Science (New York, N.Y.). 348: 1258699. PMID 25831549 DOI: 10.1126/Science.1258699  0.586
2014 Kim SH, Ragunathan K, Park J, Joo C, Kim D, Ha T. Cooperative conformational transitions keep RecA filament active during ATPase cycle. Journal of the American Chemical Society. 136: 14796-800. PMID 25252114 DOI: 10.1021/Ja506363Y  0.684
2014 Kim H, Abeysirigunawarden SC, Chen K, Mayerle M, Ragunathan K, Luthey-Schulten Z, Ha T, Woodson SA. Protein-guided RNA dynamics during early ribosome assembly. Nature. 506: 334-8. PMID 24522531 DOI: 10.1038/Nature13039  0.488
2013 Koh HR, Kidwell MA, Ragunathan K, Doudna JA, Myong S. ATP-independent diffusion of double-stranded RNA binding proteins. Proceedings of the National Academy of Sciences of the United States of America. 110: 151-6. PMID 23251028 DOI: 10.1073/Pnas.1212917110  0.556
2013 Ragunathan K, Liu C, Ha T. Correction: RecA filament sliding on DNA facilitates homology search Elife. 2. DOI: 10.7554/Elife.00488  0.532
2013 Kim SH, Ragunathan K, Park J, Joo C, Kim D, Ha T. The ATP Hydrolysis Cycle and the Corresponding Motion of RecA Filament on Single-Stranded DNA Biophysical Journal. 104. DOI: 10.1016/J.Bpj.2012.11.2998  0.674
2012 Ragunathan K, Liu C, Ha T. RecA filament sliding on DNA facilitates homology search. Elife. 1: e00067. PMID 23240082 DOI: 10.7554/Elife.00067  0.589
2012 Ragunathan K, Liu C, Ha T. Author response: RecA filament sliding on DNA facilitates homology search Elife. DOI: 10.7554/Elife.00067.019  0.515
2012 Kim H, Abeysirigunawardena S, Mayerle M, Ragunathan K, Chen K, Eargle J, Luthey-Schulten Z, Woodson S, Ha T. Single Molecule Views of the Ribosome Assembly Biophysical Journal. 102: 645a. DOI: 10.1016/J.Bpj.2011.11.3512  0.532
2011 Ragunathan K, Joo C, Ha T. Real-time observation of strand exchange reaction with high spatiotemporal resolution. Structure (London, England : 1993). 19: 1064-73. PMID 21827943 DOI: 10.1016/J.Str.2011.06.009  0.649
2011 Jain A, Liu R, Ramani B, Arauz E, Ishitsuka Y, Ragunathan K, Park J, Chen J, Xiang YK, Ha T. Probing cellular protein complexes using single-molecule pull-down. Nature. 473: 484-8. PMID 21614075 DOI: 10.1038/Nature10016  0.617
2011 Lee J, Lee S, Ragunathan K, Joo C, Ha T, Hohng S. First Realization of Single-Molecule Four-Color FRET Biophysical Journal. 100. DOI: 10.1016/J.Bpj.2010.12.2101  0.594
2010 Lee J, Lee S, Ragunathan K, Joo C, Ha T, Hohng S. Single-molecule four-color FRET. Angewandte Chemie (International Ed. in English). 49: 9922-5. PMID 21104966 DOI: 10.1002/Anie.201005402  0.587
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