| Year |
Citation |
Score |
| 2020 |
Yuste R, Hawrylycz M, Aalling N, Aguilar-Valles A, Arendt D, Arnedillo RA, Ascoli GA, Bielza C, Bokharaie V, Bergmann TB, Bystron I, Capogna M, Chang Y, Clemens A, de Kock CPJ, ... ... Scheuermann R, et al. A community-based transcriptomics classification and nomenclature of neocortical cell types. Nature Neuroscience. PMID 32839617 DOI: 10.1038/S41593-020-0685-8 |
0.305 |
|
| 2020 |
Grifoni A, Sidney J, Zhang Y, Scheuermann RH, Peters B, Sette A. A Sequence Homology and Bioinformatic Approach Can Predict Candidate Targets for Immune Responses to SARS-CoV-2. Cell Host & Microbe. PMID 32183941 DOI: 10.1016/J.Chom.2020.03.002 |
0.308 |
|
| 2019 |
Hodge RD, Bakken TE, Miller JA, Smith KA, Barkan ER, Graybuck LT, Close JL, Long B, Johansen N, Penn O, Yao Z, Eggermont J, Höllt T, Levi BP, Shehata SI, ... ... Scheuermann RH, et al. Conserved cell types with divergent features in human versus mouse cortex. Nature. PMID 31435019 DOI: 10.1038/S41586-019-1506-7 |
0.301 |
|
| 2018 |
Bakken TE, Hodge RD, Miller JA, Yao Z, Nguyen TN, Aevermann B, Barkan E, Bertagnolli D, Casper T, Dee N, Garren E, Goldy J, Graybuck LT, Kroll M, Lasken RS, ... ... Scheuermann RH, et al. Single-nucleus and single-cell transcriptomes compared in matched cortical cell types. Plos One. 13: e0209648. PMID 30586455 DOI: 10.1371/Journal.Pone.0209648 |
0.305 |
|
| 2018 |
Brown DM, Hixon AM, Oldfield LM, Zhang Y, Novotny M, Wang W, Das SR, Shabman RS, Tyler KL, Scheuermann RH. Contemporary Circulating Enterovirus D68 Strains Have Acquired the Capacity for Viral Entry and Replication in Human Neuronal Cells. Mbio. 9. PMID 30327438 DOI: 10.1128/Mbio.01954-18 |
0.499 |
|
| 2018 |
Aevermann BD, Novotny M, Bakken T, Miller JA, Diehl AD, Osumi-Sutherland D, Lasken RS, Lein ES, Scheuermann RH. Big data and single cell transcriptomics: implications for ontological representation. Human Molecular Genetics. PMID 29590361 DOI: 10.1093/Hmg/Ddy100 |
0.334 |
|
| 2017 |
Bakken T, Cowell L, Aevermann BD, Novotny M, Hodge R, Miller JA, Lee A, Chang I, McCorrison J, Pulendran B, Qian Y, Schork NJ, Lasken RS, Lein ES, Scheuermann RH. Cell type discovery and representation in the era of high-content single cell phenotyping. Bmc Bioinformatics. 18: 559. PMID 29322913 DOI: 10.1186/S12859-017-1977-1 |
0.318 |
|
| 2017 |
Scheuermann RH, Bui J, Wang HY, Qian Y. Automated Analysis of Clinical Flow Cytometry Data: A Chronic Lymphocytic Leukemia Illustration. Clinics in Laboratory Medicine. 37: 931-944. PMID 29128077 DOI: 10.1016/J.Cll.2017.07.011 |
0.311 |
|
| 2017 |
Pedersen NW, Chandran PA, Qian Y, Rebhahn J, Petersen NV, Hoff MD, White S, Lee AJ, Stanton R, Halgreen C, Jakobsen K, Mosmann T, Gouttefangeas C, Chan C, Scheuermann RH, et al. Automated Analysis of Flow Cytometry Data to Reduce Inter-Lab Variation in the Detection of Major Histocompatibility Complex Multimer-Binding T Cells. Frontiers in Immunology. 8: 858. PMID 28798746 DOI: 10.3389/Fimmu.2017.00858 |
0.309 |
|
| 2017 |
Sun G, Larsen CN, Baumgarth N, Klem EB, Scheuermann RH. Comprehensive Annotation of Mature Peptides and Genotypes for Zika Virus. Plos One. 12: e0170462. PMID 28125631 DOI: 10.1371/Journal.Pone.0170462 |
0.305 |
|
| 2017 |
Burel JG, Qian Y, Lindestam Arlehamn C, Weiskopf D, Zapardiel-Gonzalo J, Taplitz R, Gilman RH, Saito M, de Silva AD, Vijayanand P, Scheuermann RH, Sette A, Peters B. An Integrated Workflow To Assess Technical and Biological Variability of Cell Population Frequencies in Human Peripheral Blood by Flow Cytometry. Journal of Immunology (Baltimore, Md. : 1950). PMID 28069807 DOI: 10.4049/Jimmunol.1601750 |
0.31 |
|
| 2016 |
Toby IT, Levin MK, Salinas EA, Christley S, Bhattacharya S, Breden F, Buntzman A, Corrie B, Fonner J, Gupta NT, Hershberg U, Marthandan N, Rosenfeld A, Rounds W, Rubelt F, ... ... Scheuermann RH, et al. VDJML: a file format with tools for capturing the results of inferring immune receptor rearrangements. Bmc Bioinformatics. 17: 333. PMID 27766961 DOI: 10.1186/S12859-016-1214-3 |
0.308 |
|
| 2016 |
Zhang Y, Aevermann BD, Anderson TK, Burke DF, Dauphin G, Gu Z, He S, Kumar S, Larsen CN, Lee AJ, Li X, Macken C, Mahaffey C, Pickett BE, Reardon B, ... ... Scheuermann RH, et al. Influenza Research Database: An integrated bioinformatics resource for influenza virus research. Nucleic Acids Research. PMID 27679478 DOI: 10.1093/Nar/Gkw857 |
0.312 |
|
| 2015 |
Aghaeepour N, Chattopadhyay P, Chikina M, Dhaene T, Van Gassen S, Kursa M, Lambrecht BN, Malek M, Qian Y, Qiu P, Saeys Y, Stanton R, Tong D, Vens C, Walkowiak S, ... ... Scheuermann RH, et al. A benchmark for evaluation of algorithms for identification of cellular correlates of clinical outcomes. Cytometry. Part a : the Journal of the International Society For Analytical Cytology. PMID 26447924 DOI: 10.1002/Cyto.A.22732 |
0.305 |
|
| 2015 |
Kvistborg P, Gouttefangeas C, Aghaeepour N, Cazaly A, Chattopadhyay PK, Chan C, Eckl J, Finak G, Hadrup SR, Maecker HT, Maurer D, Mosmann T, Qiu P, Scheuermann RH, Welters MJ, et al. Thinking outside the gate: single-cell assessments in multiple dimensions. Immunity. 42: 591-2. PMID 25902473 DOI: 10.1016/J.Immuni.2015.04.006 |
0.307 |
|
| 2015 |
Lee AJ, Das SR, Wang W, Fitzgerald T, Pickett BE, Aevermann BD, Topham DJ, Falsey AR, Scheuermann RH. Diversifying Selection Analysis Predicts Antigenic Evolution of 2009 Pandemic H1N1 Influenza A Virus in Humans. Journal of Virology. 89: 5427-40. PMID 25741011 DOI: 10.1128/Jvi.03636-14 |
0.31 |
|
| 2014 |
Dugan VG, Emrich SJ, Giraldo-Calderón GI, Harb OS, Newman RM, Pickett BE, Schriml LM, Stockwell TB, Stoeckert CJ, Sullivan DE, Singh I, Ward DV, Yao A, Zheng J, Barrett T, ... ... Scheuermann RH, et al. Standardized metadata for human pathogen/vector genomic sequences. Plos One. 9: e99979. PMID 24936976 DOI: 10.1371/Journal.Pone.0099979 |
0.309 |
|
| 2013 |
Pickett BE, Liu M, Sadat EL, Squires RB, Noronha JM, He S, Jen W, Zaremba S, Gu Z, Zhou L, Larsen CN, Bosch I, Gehrke L, McGee M, Klem EB, ... Scheuermann RH, et al. Metadata-driven comparative analysis tool for sequences (meta-CATS): an automated process for identifying significant sequence variations that correlate with virus attributes. Virology. 447: 45-51. PMID 24210098 DOI: 10.1016/J.Virol.2013.08.021 |
0.316 |
|
| 2012 |
Pickett BE, Greer DS, Zhang Y, Stewart L, Zhou L, Sun G, Gu Z, Kumar S, Zaremba S, Larsen CN, Jen W, Klem EB, Scheuermann RH. Virus pathogen database and analysis resource (ViPR): a comprehensive bioinformatics database and analysis resource for the coronavirus research community. Viruses. 4: 3209-26. PMID 23202522 DOI: 10.3390/V4113209 |
0.333 |
|
| 2012 |
Pickett BE, Sadat EL, Zhang Y, Noronha JM, Squires RB, Hunt V, Liu M, Kumar S, Zaremba S, Gu Z, Zhou L, Larson CN, Dietrich J, Klem EB, Scheuermann RH. ViPR: an open bioinformatics database and analysis resource for virology research. Nucleic Acids Research. 40: D593-8. PMID 22006842 DOI: 10.1093/Nar/Gkr859 |
0.339 |
|
| 2011 |
Diehl AD, Augustine AD, Blake JA, Cowell LG, Gold ES, Gondré-Lewis TA, Masci AM, Meehan TF, Morel PA, Nijnik A, Peters B, Pulendran B, Scheuermann RH, Yao QA, Zand MS, et al. Hematopoietic cell types: prototype for a revised cell ontology. Journal of Biomedical Informatics. 44: 75-9. PMID 20123131 DOI: 10.1016/J.Jbi.2010.01.006 |
0.304 |
|
| 2010 |
Qian Y, Wei C, Eun-Hyung Lee F, Campbell J, Halliley J, Lee JA, Cai J, Kong YM, Sadat E, Thomson E, Dunn P, Seegmiller AC, Karandikar NJ, Tipton CM, Mosmann T, ... ... Scheuermann RH, et al. Elucidation of seventeen human peripheral blood B-cell subsets and quantification of the tetanus response using a density-based method for the automated identification of cell populations in multidimensional flow cytometry data. Cytometry. Part B, Clinical Cytometry. 78: S69-82. PMID 20839340 DOI: 10.1002/Cyto.B.20554 |
0.32 |
|
| 2010 |
Chang RL, Luo F, Johnson S, Scheuermann RH. Deterministic graph-theoretic algorithm for detecting modules in biological interaction networks. International Journal of Bioinformatics Research and Applications. 6: 101-19. PMID 20223734 DOI: 10.1504/Ijbra.2010.032115 |
0.511 |
|
| 2009 |
Greenbaum JA, Kotturi MF, Kim Y, Oseroff C, Vaughan K, Salimi N, Vita R, Ponomarenko J, Scheuermann RH, Sette A, Peters B. Pre-existing immunity against swine-origin H1N1 influenza viruses in the general human population. Proceedings of the National Academy of Sciences of the United States of America. 106: 20365-70. PMID 19918065 DOI: 10.1073/Pnas.0911580106 |
0.308 |
|
| 2009 |
Masci AM, Arighi CN, Diehl AD, Lieberman AE, Mungall C, Scheuermann RH, Smith B, Cowell LG. An improved ontological representation of dendritic cells as a paradigm for all cell types. Bmc Bioinformatics. 10: 70. PMID 19243617 DOI: 10.1186/1471-2105-10-70 |
0.319 |
|
| 2008 |
Squires B, Macken C, Garcia-Sastre A, Godbole S, Noronha J, Hunt V, Chang R, Larsen CN, Klem E, Biersack K, Scheuermann RH. BioHealthBase: informatics support in the elucidation of influenza virus host pathogen interactions and virulence. Nucleic Acids Research. 36: D497-503. PMID 17965094 DOI: 10.1093/Nar/Gkm905 |
0.568 |
|
| 2007 |
Luo F, Yang Y, Chen CF, Chang R, Zhou J, Scheuermann RH. Modular organization of protein interaction networks. Bioinformatics (Oxford, England). 23: 207-14. PMID 17092991 DOI: 10.1093/Bioinformatics/Btl562 |
0.525 |
|
| 2007 |
Luo F, Yang Y, Chen C, Chang R, Zhou J, Scheuermann RH. Modular organization of protein interaction networks Bioinformatics. 23: 916-916. DOI: 10.1093/bioinformatics/btm037 |
0.467 |
|
| 2002 |
Hsueh RC, Hammill AM, Lee JA, Uhr JW, Scheuermann RH. Activation of the Syk tyrosine kinase is insufficient for downstream signal transduction in B lymphocytes. Bmc Immunology. 3: 16. PMID 12470302 DOI: 10.1186/1471-2172-3-16 |
0.619 |
|
| 2000 |
Hsueh RC, Scheuermann RH. Tyrosine kinase activation in the decision between growth, differentiation, and death responses initiated from the B cell antigen receptor. Advances in Immunology. 75: 283-316. PMID 10879287 DOI: 10.1016/S0065-2776(00)75007-3 |
0.307 |
|
| 1999 |
Hsueh RC, Hammill AK, Marches R, Uhr JW, Scheuermann RH. Antigen receptor signaling induces differential tyrosine kinase activation and population stability in B-cell lymphoma. Current Topics in Microbiology and Immunology. 246: 299-304; discussion . PMID 10396069 DOI: 10.1007/978-3-642-60162-0_37 |
0.313 |
|
| 1998 |
Savell VH, Sherman T, Scheuermann RH, Siddiqui AM, Margraf LR. Bcl-2 expression in Langerhans' cell histiocytosis. Pediatric and Developmental Pathology : the Official Journal of the Society For Pediatric Pathology and the Paediatric Pathology Society. 1: 210-5. PMID 10463280 DOI: 10.1007/S100249900028 |
0.307 |
|
| 1995 |
Herrscher RF, Kaplan MH, Lelsz DL, Das C, Scheuermann R, Tucker PW. The immunoglobulin heavy-chain matrix-associating regions are bound by Bright: A B cell-specific trans-activator that describes a new DNA-binding protein family Genes and Development. 9: 3067-3082. PMID 8543152 DOI: 10.1101/Gad.9.24.3067 |
0.304 |
|
| 1994 |
Scheuermann RH, Racila E, Tucker T, Yefenof E, Street NE, Vitetta ES, Picker LJ, Uhr JW. Lyn tyrosine kinase signals cell cycle arrest but not apoptosis in B-lineage lymphoma cells. Proceedings of the National Academy of Sciences of the United States of America. 91: 4048-52. PMID 7513431 DOI: 10.1073/Pnas.91.9.4048 |
0.302 |
|
| 1988 |
Burckhardt SE, Woodgate R, Scheuermann RH, Echols H. UmuD mutagenesis protein of Escherichia coli: overproduction, purification, and cleavage by RecA. Proceedings of the National Academy of Sciences of the United States of America. 85: 1811-5. PMID 3279417 DOI: 10.1073/Pnas.85.6.1811 |
0.589 |
|
| 1986 |
Lu C, Scheuermann RH, Echols H. Capacity of RecA protein to bind preferentially to UV lesions and inhibit the editing subunit (epsilon) of DNA polymerase III: a possible mechanism for SOS-induced targeted mutagenesis. Proceedings of the National Academy of Sciences of the United States of America. 83: 619-23. PMID 3456159 DOI: 10.1073/Pnas.83.3.619 |
0.575 |
|
| 1984 |
Scheuermann RH, Echols H. A separate editing exonuclease for DNA replication: the epsilon subunit of Escherichia coli DNA polymerase III holoenzyme. Proceedings of the National Academy of Sciences of the United States of America. 81: 7747-51. PMID 6393125 DOI: 10.1073/Pnas.81.24.7747 |
0.569 |
|
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