| Year |
Citation |
Score |
| 2023 |
Maurer J, Albrecht CS, Herbert P, Heussman D, Chang A, von Hippel PH, Marcus AH. Studies of DNA 'Breathing' by Polarization-Sweep Single-Molecule Fluorescence Microscopy of Exciton-Coupled (iCy3) Dimer-Labeled DNA Fork Constructs. The Journal of Physical Chemistry. B. PMID 38060691 DOI: 10.1021/acs.jpcb.3c06463 |
0.795 |
|
| 2023 |
Heussman D, Enkhbaatar L, Sorour MI, Kistler KA, von Hippel PH, Matsika S, Marcus AH. Using transition density models to interpret experimental optical spectra of exciton-coupled cyanine (iCy3)2 dimer probes of local DNA conformations at or near functional protein binding sites. Nucleic Acids Research. PMID 38050987 DOI: 10.1093/nar/gkad1163 |
0.631 |
|
| 2022 |
Marcus AH, Heussman D, Maurer J, Albrecht CS, Herbert P, von Hippel PH. Studies of Local DNA Backbone Conformation and Conformational Disorder Using Site-Specific Exciton-Coupled Dimer Probe Spectroscopy. Annual Review of Physical Chemistry. PMID 36696590 DOI: 10.1146/annurev-physchem-090419-041204 |
0.792 |
|
| 2022 |
Heussman D, Kittell J, von Hippel PH, Marcus AH. Temperature-dependent local conformations and conformational distributions of cyanine dimer labeled single-stranded-double-stranded DNA junctions by 2D fluorescence spectroscopy. The Journal of Chemical Physics. 156: 045101. PMID 35105081 DOI: 10.1063/5.0076261 |
0.647 |
|
| 2021 |
Israels B, Albrecht CS, Dang A, Barney M, von Hippel PH, Marcus AH. Submillisecond Conformational Transitions of Short Single-Stranded DNA Lattices by Photon Correlation Single-Molecule Förster Resonance Energy Transfer. The Journal of Physical Chemistry. B. PMID 34379430 DOI: 10.1021/acs.jpcb.1c04119 |
0.617 |
|
| 2021 |
Beyerle ER, Dinpajooh M, Ji H, von Hippel PH, Marcus AH, Guenza MG. Dinucleotides as simple models of the base stacking-unstacking component of DNA 'breathing' mechanisms. Nucleic Acids Research. PMID 33503257 DOI: 10.1093/nar/gkab015 |
0.614 |
|
| 2021 |
Herbert PJ, Heussman D, Maurer J, Weitzel SE, Hippel PHv, Marcus AH. Using Exciton-Coupled Probe Spectroscopy to Investigate the Roles of Local DNA Conformational Dynamics in Processive DNA Polymerase Holoenzyme Formation Biophysical Journal. 120: 32a. DOI: 10.1016/J.BPJ.2020.11.449 |
0.753 |
|
| 2021 |
Albrecht C, Israels BA, Chvatal C, Hippel PHv, Marcus AH. Connecting Structure with Kinetics of Single-Stranded DNA Fluctuations that Provide Potential Binding Sites for Replication Proteins Biophysical Journal. 120: 219a. DOI: 10.1016/J.BPJ.2020.11.1471 |
0.307 |
|
| 2021 |
Maurer J, Tamimi A, Chang A, Marcus AH. Single Molecule Flourescence Methods to Monitor Site-Specific Fluctuations of Cy3 Monomer and Dimer Labeled DNA Constructs within Macromolecular Machines Biophysical Journal. 120: 184a. DOI: 10.1016/J.BPJ.2020.11.1273 |
0.301 |
|
| 2020 |
Tamimi A, Landes T, Lavoie J, Raymer MG, Marcus AH. Fluorescence-detected Fourier transform electronic spectroscopy by phase-tagged photon counting. Optics Express. 28: 25194-25214. PMID 32907046 DOI: 10.1364/Oe.400245 |
0.721 |
|
| 2020 |
Heussman D, Kittell J, Pande M, Tamimi A, Steinberg T, von Hippel PH, Marcus AH. 2D Fluorescence Spectroscopy is used to Probe Local Conformations and Conformational Disorder of the Sugar-Phosphate Backbones of DNA at and Near DNA Replication Fork Junctions Biophysical Journal. 118: 374a-375a. DOI: 10.1016/j.bpj.2019.11.2142 |
0.428 |
|
| 2020 |
Israels BA, Dang A, von Hippel PH, Marcus AH. Sub-microsecond Single-Molecule FRET Studies of Single-Stranded DNA Conformation Fluctuations Mediated by Single-Stranded DNA Binding Proteins Biophysical Journal. 118: 188a. DOI: 10.1016/j.bpj.2019.11.1143 |
0.346 |
|
| 2019 |
von Hippel PH, Marcus AH. The Many Roles of Binding Cooperativity in the Control of DNA Replication. Biophysical Journal. PMID 31708164 DOI: 10.1016/j.bpj.2019.10.029 |
0.537 |
|
| 2019 |
Ji H, Johnson NP, von Hippel PH, Marcus AH. Local DNA Base Conformations and Ligand Intercalation in DNA Constructs Containing Optical Probes. Biophysical Journal. PMID 31474304 DOI: 10.1016/j.bpj.2019.08.006 |
0.629 |
|
| 2019 |
Heussman D, Kittell J, Kringle L, Tamimi A, von Hippel PH, Marcus AH. Measuring local conformations and conformational disorder of (Cy3) dimer labeled DNA fork junctions using absorbance, circular dichroism and two-dimensional fluorescence spectroscopy. Faraday Discussions. PMID 31038134 DOI: 10.1039/c8fd00245b |
0.798 |
|
| 2018 |
Kringle L, Sawaya NPD, Widom J, Adams C, Raymer MG, Aspuru-Guzik A, Marcus AH. Temperature-dependent conformations of exciton-coupled Cy3 dimers in double-stranded DNA. The Journal of Chemical Physics. 148: 085101. PMID 29495791 DOI: 10.1063/1.5020084 |
0.428 |
|
| 2018 |
Tamimi A, Heussman DJ, Kringle LM, von Hippel PH, Marcus AH. Measuring Structure and Disorder of (Cy3)2 Dimer Labeled DNA Fork-Junctions using Two-Dimensional Fluorescence Spectroscopy (2DFS) Biophysical Journal. 114: 171a. DOI: 10.1016/j.bpj.2017.11.953 |
0.764 |
|
| 2017 |
Phelps C, Israels B, Jose D, Marsh MC, von Hippel PH, Marcus AH. Using microsecond single-molecule FRET to determine the assembly pathways of T4 ssDNA binding protein onto model DNA replication forks. Proceedings of the National Academy of Sciences of the United States of America. PMID 28416680 DOI: 10.1073/Pnas.1619819114 |
0.586 |
|
| 2017 |
Jose D, Mary Michael M, Lee W, Steinberg TH, Marcus AH, von Hippel PH. Using Site Specific Fluorescent Probes to Examine Replication Fork Destabilization by Regulatory Proteins of the Bacteriophage T4 DNA Replication Complex Biophysical Journal. 112: 314a-315a. DOI: 10.1016/J.BPJ.2016.11.1705 |
0.329 |
|
| 2016 |
Phelps C, Israels B, Marsh MC, von Hippel PH, Marcus AH. Using Multiorder Time-Correlation Functions (TCFs) To Elucidate Biomolecular Reaction Pathways from Microsecond Single-Molecule Fluorescence Experiments. The Journal of Physical Chemistry. B. PMID 27992233 DOI: 10.1021/Acs.Jpcb.6B08449 |
0.595 |
|
| 2016 |
Lee W, Gillies JP, Jose D, Israels BA, von Hippel PH, Marcus AH. Single-molecule FRET studies of the cooperative and non-cooperative binding kinetics of the bacteriophage T4 single-stranded DNA binding protein (gp32) to ssDNA lattices at replication fork junctions. Nucleic Acids Research. PMID 27694621 DOI: 10.1093/nar/gkw863 |
0.542 |
|
| 2016 |
Jose D, Michael MM, Romano P, Camel BR, Meze KH, Johnson NP, Guenza M, Marcus AH, von Hippel PH. Binding of the Single-Stranded DNA Binding Protein (gp32) of T4 Bacteriophage Induces Position-Specific Local Conformational Changes in DNA Lattices that can be Monitored by Fluorescent Probes Biophysical Journal. 110: 239a. DOI: 10.1016/J.Bpj.2015.11.1316 |
0.379 |
|
| 2015 |
Johnson NP, Ji H, Steinberg TH, von Hippel PH, Marcus AH. Sequence-Dependent Conformational Heterogeneity and Proton Transfer Reactivity of the Fluorescent Guanine Analog 6-Methyl Isoxanthopterin (6-MI) in DNA. The Journal of Physical Chemistry. B. PMID 26368400 DOI: 10.1021/acs.jpcb.5b06361 |
0.646 |
|
| 2015 |
Phelps C, Israels B, Lee W, Jose D, Hippel PHv, Marcus AH. Dynamic Interactions between DNA and the T4 Single-Stranded Binding Protein gp32: Multi-Dimensional Correlation Analysis of Microsecond Single-Molecule FRET and Linear Dichroism Fluctuations Biophysical Journal. 108. DOI: 10.1016/J.Bpj.2014.11.2190 |
0.39 |
|
| 2014 |
Lee W, von Hippel PH, Marcus AH. Internally labeled Cy3/Cy5 DNA constructs show greatly enhanced photo-stability in single-molecule FRET experiments. Nucleic Acids Research. 42: 5967-77. PMID 24627223 DOI: 10.1093/nar/gku199 |
0.638 |
|
| 2014 |
Lee W, Gillies JP, Ji H, Phelps CE, Jose D, Hippel PHv, Marcus AH. Studies of DNA Breathing and Helicase Mechanisms by Single Molecule (SM) Fret Between 6-MI and Cy3 in DNA Replication Fork Constructs Biophysical Journal. 106. DOI: 10.1016/J.Bpj.2013.11.446 |
0.421 |
|
| 2013 |
Marcus AH, Berg MA, Zheng J. Biography of Michael D. Fayer. The Journal of Physical Chemistry. B. 117: 15237. PMID 24328065 DOI: 10.1021/jp403915d |
0.548 |
|
| 2013 |
Marcus AH, Berg MA, Zheng J. Tribute to Michael D. Fayer. The Journal of Physical Chemistry. B. 117: 15235-6. PMID 24328064 DOI: 10.1021/jp403916n |
0.548 |
|
| 2013 |
Widom JR, Johnson NP, von Hippel PH, Marcus AH. Solution conformation of 2-aminopurine (2-AP) dinucleotide determined by ultraviolet 2D fluorescence spectroscopy (UV-2D FS). New Journal of Physics. 15. PMID 24223491 DOI: 10.1088/1367-2630/15/2/025028 |
0.607 |
|
| 2013 |
Phelps C, Lee W, Jose D, von Hippel PH, Marcus AH. Single-molecule FRET and linear dichroism studies of DNA breathing and helicase binding at replication fork junctions. Proceedings of the National Academy of Sciences of the United States of America. 110: 17320-5. PMID 24062430 DOI: 10.1073/Pnas.1314862110 |
0.635 |
|
| 2013 |
von Hippel PH, Johnson NP, Marcus AH. Fifty years of DNA "Breathing": Reflections on old and new approaches. Biopolymers. 99: 923-54. PMID 23840028 DOI: 10.1002/bip.22347 |
0.592 |
|
| 2013 |
Lee W, Jose D, Phelps C, Marcus AH, von Hippel PH. A single-molecule view of the assembly pathway, subunit stoichiometry, and unwinding activity of the bacteriophage T4 primosome (helicase-primase) complex. Biochemistry. 52: 3157-70. PMID 23578280 DOI: 10.1021/Bi400231S |
0.58 |
|
| 2013 |
Widom JR, Rappoport D, Perdomo-Ortiz A, Thomsen H, Johnson NP, von Hippel PH, Aspuru-Guzik A, Marcus AH. Electronic transition moments of 6-methyl isoxanthopterin--a fluorescent analogue of the nucleic acid base guanine. Nucleic Acids Research. 41: 995-1004. PMID 23185042 DOI: 10.1093/Nar/Gks1148 |
0.577 |
|
| 2013 |
Widom JR, Perdomo-Ortiz A, Lee W, Johnson NP, Hippel PHv, Aspuru-Guzik A, Marcus AH. Determining the Conformations of Porphyrin Dimers and Dinucleotide-Substituted DNA Constructs by 2-Dimensional Fluorescence Spectroscopy Biophysical Journal. 104. DOI: 10.1016/J.Bpj.2012.11.2361 |
0.383 |
|
| 2012 |
Datta K, Johnson NP, Villani G, Marcus AH, von Hippel PH. Characterization of the 6-methyl isoxanthopterin (6-MI) base analog dimer, a spectroscopic probe for monitoring guanine base conformations at specific sites in nucleic acids. Nucleic Acids Research. 40: 1191-202. PMID 22009678 DOI: 10.1093/Nar/Gkr858 |
0.63 |
|
| 2011 |
Lott GA, Perdomo-Ortiz A, Utterback JK, Widom JR, Aspuru-Guzik A, Marcus AH. Conformation of self-assembled porphyrin dimers in liposome vesicles by phase-modulation 2D fluorescence spectroscopy. Proceedings of the National Academy of Sciences of the United States of America. 108: 16521-6. PMID 21940499 DOI: 10.1073/Pnas.1017308108 |
0.728 |
|
| 2009 |
Lott GA, Senning EN, Fink MC, Marcus AH. I. Conformational dynamics of biological macromolecules by polarization-modulated Fourier imaging correlation spectroscopy. The Journal of Physical Chemistry. B. 113: 6847-53. PMID 19368366 DOI: 10.1021/Jp8093116 |
0.311 |
|
| 2002 |
Marcus AH, Schofield J, Rice SA. Experimental observations of non-Gaussian behavior and stringlike cooperative dynamics in concentrated quasi-two-dimensional colloidal liquids. Physical Review. E, Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics. 60: 5725-36. PMID 11970468 DOI: 10.1103/Physreve.60.5725 |
0.556 |
|
| 2000 |
Marcus AH, Schofield J, Rice S. Erratum: Experimental observations of non-Gaussian behavior and stringlike cooperative dynamics in concentrated quasi-two-dimensional colloidal liquids [Phys. Rev. E60, 5725 (1999)] Physical Review E. 61: 7260-7260. DOI: 10.1103/Physreve.61.7260 |
0.537 |
|
| 1998 |
Chung-Ming Tam M, Rice SA, Marcus AH. Unusual structure in a quasi-two-dimensional binary colloid fluid Chemical Physics Letters. 294: 217-222. DOI: 10.1016/S0009-2614(98)00868-9 |
0.331 |
|
| 1997 |
Marcus AH, Rice SA. Phase transitions in a confined quasi-two-dimensional colloid suspension Physical Review E. 55: 637-656. DOI: 10.1103/PHYSREVE.55.637 |
0.314 |
|
| 1996 |
Marcus AH, Morkved T, Jaeger H, Rice SA, Hussey DM, Diachun NA, Fayer MD. Chromophore Rich Nanodomains in Bulk and Ultra Thin Film Polymer Blends Molecular Crystals and Liquid Crystals. 283: 31-35. DOI: 10.1080/10587259608037860 |
0.573 |
|
| 1996 |
Schofield J, Marcus AH, Rice SA. Dynamics of Quasi Two-Dimensional Colloidal Systems The Journal of Physical Chemistry. 100: 18950-18961. DOI: 10.1021/Jp961171M |
0.548 |
|
| 1996 |
Leezenberg PB, Marcus AH, Frank CW, Fayer MD. Rotational Dynamics of Naphthalene-Labeled Cross-link Junctions in Poly(dimethylsiloxane) Elastomers The Journal of Physical Chemistry. 100: 7646-7655. DOI: 10.1021/Jp953632U |
0.538 |
|
| 1995 |
Marcus AH, Hussey DM, Diachun NA, Fayer MD. Nanodomain Formation In A Liquid Polymer Blend : The Initial Stages Of Phase Separation Journal of Chemical Physics. 103: 8189-8200. DOI: 10.1063/1.470183 |
0.547 |
|
| 1994 |
Finger KU, Marcus AH, Fayer MD. Structure of complex systems using electronic excitation transport: Theory, Monte Carlo simulations, and experiments on micelle solutions The Journal of Chemical Physics. 100: 271-286. DOI: 10.1063/1.466996 |
0.572 |
|
| 1994 |
Marcus AH, Fayer MD, Curro JG. Intermolecular structure in a single component polymer glass: Towards high resolution measurements of the sidechain pair correlation function The Journal of Chemical Physics. 100: 9156-9169. DOI: 10.1063/1.466670 |
0.542 |
|
| 1994 |
Diachun NA, Marcus AH, Hussey DM, Fayer MD. Dynamics in Polydimethylsiloxane: The Effect of Solute Polarity Journal of the American Chemical Society. 116: 1027-1032. DOI: 10.1021/Ja00082A025 |
0.586 |
|
| 1993 |
Marcus AH, Diachun NA, Fayer MD. Intermolecular structure in a polymer glass: electronic excitation transfer studies Macromolecules. 26: 3041-3048. DOI: 10.1021/Ma00064A008 |
0.584 |
|
| 1993 |
Quitevis EL, Marcus AH, Fayer MD. Dynamics of ionic lipophilic probes in micelles: picosecond fluorescence depolarization measurements The Journal of Physical Chemistry. 97: 5762-5769. DOI: 10.1021/J100123A049 |
0.575 |
|
| 1993 |
Marcus AH, Diachun NA, Fayer MD. Electronic excitation transfer in concentrated micelle solutions. [Erratum to document cited in CA117(20):200913w] The Journal of Physical Chemistry. 97: 972-972. DOI: 10.1021/J100106A026 |
0.512 |
|
| 1992 |
Marcus AH, Diachun NA, Fayer MD. Electronic excitation transfer in concentrated micelle solutions The Journal of Physical Chemistry. 96: 8930-8937. DOI: 10.1021/J100201A043 |
0.584 |
|
| 1992 |
Stein AD, Hoffmann DA, Marcus AH, Leezenberg PB, Frank CW, Fayer MD. Dynamics in poly(dimethylsiloxane) melts: fluorescence depolarization measurements of probe chromophore orientational relaxation The Journal of Physical Chemistry. 96: 5255-5263. DOI: 10.1021/J100192A017 |
0.576 |
|
| 1991 |
Marcus AH, Fayer MD. Electronic excitation transfer in clustered chromophore systems: Calculation of time‐resolved observables for intercluster transfer The Journal of Chemical Physics. 94: 5622-5630. DOI: 10.1063/1.460498 |
0.523 |
|
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