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Aaron Streets, Ph.D. - Publications

Affiliations: 
2005-2012 Physics Stanford University, Palo Alto, CA 
 2012-2016 Chemistry Peking University, Beijing, Beijing Shi, China 
 2016- Bioengineering University of California, Berkeley, Berkeley, CA, United States 
Area:
Bioengineering, Genetics, Microfluidics, Computational Biology, Coherent Raman Microscopy
Website:
https://streetslab.berkeley.edu/
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32 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Gupta A, Efthymiou V, Kodani SD, Shamsi F, Patti ME, Tseng YH, Streets A. Mapping the transcriptional landscape of human white and brown adipogenesis using single-nuclei RNA-seq. Molecular Metabolism. 101746. PMID 37286033 DOI: 10.1016/j.molmet.2023.101746  0.747
2022 Zhang X, Dorlhiac G, Landry MP, Streets A. Phototoxic effects of nonlinear optical microscopy on cell cycle, oxidative states, and gene expression. Scientific Reports. 12: 18796. PMID 36335145 DOI: 10.1038/s41598-022-23054-7  0.763
2022 Muñoz A, Theusch E, Kuang YL, Nalula G, Peaslee C, Dorlhiac G, Landry MP, Streets A, Krauss RM, Iribarren C, Mattis AN, Medina MW. Undifferentiated Induced Pluripotent Stem Cells as a Genetic Model for Nonalcoholic Fatty Liver Disease. Cellular and Molecular Gastroenterology and Hepatology. PMID 35863744 DOI: 10.1016/j.jcmgh.2022.07.009  0.742
2022 Chen T, Cao C, Zhang J, Streets A, Li T, Huang Y. Histologically resolved multiomics enables precise molecular profiling of human intratumor heterogeneity. Plos Biology. 20: e3001699. PMID 35776767 DOI: 10.1371/journal.pbio.3001699  0.693
2022 Altemose N, Maslan A, Smith OK, Sundararajan K, Brown RR, Mishra R, Detweiler AM, Neff N, Miga KH, Straight AF, Streets A. DiMeLo-seq: a long-read, single-molecule method for mapping protein-DNA interactions genome wide. Nature Methods. PMID 35396487 DOI: 10.1038/s41592-022-01475-6  0.743
2022 Nurk S, Koren S, Rhie A, Rautiainen M, Bzikadze AV, Mikheenko A, Vollger MR, Altemose N, Uralsky L, Gershman A, Aganezov S, Hoyt SJ, Diekhans M, Logsdon GA, Alonge M, ... ... Streets A, et al. The complete sequence of a human genome. Science (New York, N.Y.). 376: 44-53. PMID 35357919 DOI: 10.1126/science.abj6987  0.731
2022 Altemose N, Logsdon GA, Bzikadze AV, Sidhwani P, Langley SA, Caldas GV, Hoyt SJ, Uralsky L, Ryabov FD, Shew CJ, Sauria MEG, Borchers M, Gershman A, Mikheenko A, Shepelev VA, ... ... Streets A, et al. Complete genomic and epigenetic maps of human centromeres. Science (New York, N.Y.). 376: eabl4178. PMID 35357911 DOI: 10.1126/science.abl4178  0.735
2022 Gayoso A, Lopez R, Xing G, Boyeau P, Valiollah Pour Amiri V, Hong J, Wu K, Jayasuriya M, Mehlman E, Langevin M, Liu Y, Samaran J, Misrachi G, Nazaret A, Clivio O, ... ... Streets A, et al. A Python library for probabilistic analysis of single-cell omics data. Nature Biotechnology. PMID 35132262 DOI: 10.1038/s41587-021-01206-w  0.775
2022 Bangs DJ, Tsitsiklis A, Steier Z, Chan SW, Kaminski J, Streets A, Yosef N, Robey EA. CXCR3 regulates stem and proliferative CD8+ T cells during chronic infection by promoting interactions with DCs in splenic bridging channels. Cell Reports. 38: 110266. PMID 35045305 DOI: 10.1016/j.celrep.2021.110266  0.749
2022 Gupta A, Shamsi F, Altemose N, Dorlhiac GF, Cypess AM, White AP, Yosef N, Patti ME, Tseng YH, Streets A. Characterization of transcript enrichment and detection bias in single-nucleus RNA-seq for mapping of distinct human adipocyte lineages. Genome Research. PMID 35042723 DOI: 10.1101/gr.275509.121  0.732
2021 Cable J, Elowitz MB, Domingos AI, Habib N, Itzkovitz S, Hamidzada H, Balzer MS, Yanai I, Liberali P, Whited J, Streets A, Cai L, Stergachis AB, Hong CKY, Keren L, et al. Single cell biology-a Keystone Symposia report. Annals of the New York Academy of Sciences. PMID 34605044 DOI: 10.1111/nyas.14692  0.638
2021 Lutes LK, Steier Z, McIntyre LL, Pandey S, Kaminski J, Hoover AR, Ariotti S, Streets A, Yosef N, Robey EA. T cell self-reactivity during thymic development dictates the timing of positive selection. Elife. 10. PMID 33884954 DOI: 10.7554/eLife.65435  0.735
2021 Shamsi F, Piper M, Ho LL, Huang TL, Gupta A, Streets A, Lynes MD, Tseng YH. Vascular smooth muscle-derived Trpv1 progenitors are a source of cold-induced thermogenic adipocytes. Nature Metabolism. PMID 33846638 DOI: 10.1038/s42255-021-00373-z  0.768
2021 Kim S, Dorlhiac G, Cotrim Chaves R, Zalavadia M, Streets A. Paper-thin multilayer microfluidic devices with integrated valves. Lab On a Chip. PMID 33690757 DOI: 10.1039/d0lc01217c  0.726
2021 Gayoso A, Steier Z, Lopez R, Regier J, Nazor KL, Streets A, Yosef N. Joint probabilistic modeling of single-cell multi-omic data with totalVI. Nature Methods. PMID 33589839 DOI: 10.1038/s41592-020-01050-x  0.746
2020 Altemose N, Maslan A, Rios-Martinez C, Lai A, White JA, Streets A. μDamID: A Microfluidic Approach for Joint Imaging and Sequencing of Protein-DNA Interactions in Single Cells. Cell Systems. 11: 354-366.e9. PMID 33099405 DOI: 10.1016/j.cels.2020.08.015  0.763
2020 Chen TN, Gupta A, Zalavadia MD, Streets A. μCB-seq: microfluidic cell barcoding and sequencing for high-resolution imaging and sequencing of single cells. Lab On a Chip. PMID 32931539 DOI: 10.1039/d0lc00169d  0.803
2019 Bezci SE, Werbner B, Zhou M, Malollari KG, Dorlhiac G, Carraro C, Streets A, O'Connell GD. Radial variation in biochemical composition of the bovine caudal intervertebral disc. Jor Spine. 2: e1065. PMID 31572982 DOI: 10.1002/jsp2.1065  0.75
2018 Gupta A, Dorlhiac GF, Streets AM. Quantitative imaging of lipid droplets in single cells. The Analyst. PMID 30357117 DOI: 10.1039/c8an01525b  0.722
2018 Beyene A, Alizadehmojarad AA, Dorlhiac G, Goh N, Streets A, Král P, Vukovic L, Landry MP. Ultralarge Modulation of Fluorescence by Neuromodulators in Carbon Nanotubes Functionalized with Self-assembled Oligonucleotide Rings. Nano Letters. PMID 30350638 DOI: 10.1021/Acs.Nanolett.8B02937  0.749
2017 Wu AR, Wang J, Streets AM, Huang Y. Single-Cell Transcriptional Analysis. Annual Review of Analytical Chemistry (Palo Alto, Calif.). PMID 28301747 DOI: 10.1146/Annurev-Anchem-061516-045228  0.669
2016 Cao C, Zhou D, Chen T, Streets AM, Huang Y. Label-free Digital Quantification of Lipid Droplets in Single Cells by Stimulated Raman Microscopy on a Microfluidic Platform. Analytical Chemistry. PMID 27041129 DOI: 10.1021/Acs.Analchem.6B00862  0.702
2015 Shen J, Jiang D, Fu Y, Wu X, Guo H, Feng B, Pang Y, Streets AM, Tang F, Huang Y. H3K4me3 epigenomic landscape derived from ChIP-Seq of 1,000 mouse early embryonic cells. Cell Research. 25: 143-7. PMID 25178839 DOI: 10.1038/Cr.2014.119  0.651
2014 Streets AM, Huang Y. How deep is enough in single-cell RNA-seq? Nature Biotechnology. 32: 1005-6. PMID 25299920 DOI: 10.1038/Nbt.3039  0.68
2014 Streets AM, Li A, Chen T, Huang Y. Imaging without fluorescence: nonlinear optical microscopy for quantitative cellular imaging. Analytical Chemistry. 86: 8506-13. PMID 25079337 DOI: 10.1021/Ac5013706  0.657
2014 Streets AM, Zhang X, Cao C, Pang Y, Wu X, Xiong L, Yang L, Fu Y, Zhao L, Tang F, Huang Y. Microfluidic single-cell whole-transcriptome sequencing. Proceedings of the National Academy of Sciences of the United States of America. 111: 7048-53. PMID 24782542 DOI: 10.1073/Pnas.1402030111  0.707
2014 Streets AM, Huang Y. Microfluidics for biological measurements with single-molecule resolution. Current Opinion in Biotechnology. 25: 69-77. PMID 24484883 DOI: 10.1016/J.Copbio.2013.08.013  0.634
2013 Chen T, Lu F, Streets AM, Fei P, Quan J, Huang Y. Optical imaging of non-fluorescent nanodiamonds in live cells using transient absorption microscopy. Nanoscale. 5: 4701-5. PMID 23639946 DOI: 10.1039/C3Nr00308F  0.67
2013 Streets AM, Huang Y. Chip in a lab: Microfluidics for next generation life science research. Biomicrofluidics. 7: 11302. PMID 23460772 DOI: 10.1063/1.4789751  0.602
2013 Streets AM, Sourigues Y, Kopito RR, Melki R, Quake SR. Simultaneous Measurement of Amyloid Fibril Formation by Dynamic Light Scattering and Fluorescence Reveals Complex Aggregation Kinetics Plos One. 8. PMID 23349924 DOI: 10.1371/Journal.Pone.0054541  0.539
2011 Kim S, Streets AM, Lin RR, Quake SR, Weiss S, Majumdar DS. High-throughput single-molecule optofluidic analysis Nature Methods. 8: 242-245. PMID 21297618 DOI: 10.1038/Nmeth.1569  0.595
2010 Streets AM, Quake SR. Ostwald ripening of clusters during protein crystallization. Physical Review Letters. 104: 178102. PMID 20482145 DOI: 10.1103/Physrevlett.104.178102  0.523
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