| Year |
Citation |
Score |
| 2023 |
Larue GE, Roy SW. Where the minor things are: a pan-eukaryotic survey suggests neutral processes may explain much of minor intron evolution. Nucleic Acids Research. 51: 10884-10908. PMID 37819006 DOI: 10.1093/nar/gkad797 |
0.406 |
|
| 2022 |
Roy SW, Gozashti L, Bowser BA, Weinstein BN, Larue GE, Corbett-Detig R. Intron-rich dinoflagellate genomes driven by Introner transposable elements of unprecedented diversity. Current Biology : Cb. 33: 189-196.e4. PMID 36543167 DOI: 10.1016/j.cub.2022.11.046 |
0.428 |
|
| 2022 |
Gozashti L, Roy SW, Thornlow B, Kramer A, Ares M, Corbett-Detig R. Transposable elements drive intron gain in diverse eukaryotes. Proceedings of the National Academy of Sciences of the United States of America. 119: e2209766119. PMID 36417430 DOI: 10.1073/pnas.2209766119 |
0.369 |
|
| 2021 |
Márquez Y, Mantica F, Cozzuto L, Burguera D, Hermoso-Pulido A, Ponomarenko J, Roy SW, Irimia M. ExOrthist: a tool to infer exon orthologies at any evolutionary distance. Genome Biology. 22: 239. PMID 34416914 DOI: 10.1186/s13059-021-02441-9 |
0.375 |
|
| 2021 |
Larue GE, Eliáš M, Roy SW. Expansion and transformation of the minor spliceosomal system in the slime mold Physarum polycephalum. Current Biology : Cb. PMID 34015249 DOI: 10.1016/j.cub.2021.04.050 |
0.312 |
|
| 2021 |
Lim CS, Weinstein BN, Roy SW, Brown CM. Analysis of fungal genomes reveals commonalities of intron gain or loss and functions in intron-poor species. Molecular Biology and Evolution. PMID 33772558 DOI: 10.1093/molbev/msab094 |
0.425 |
|
| 2020 |
Roy SW. Noncoding RNA, Intragenomic Conflict, and Rodent SRY Evolution. Trends in Genetics : Tig. PMID 33243450 DOI: 10.1016/j.tig.2020.11.004 |
0.326 |
|
| 2020 |
Moyer DC, Larue GE, Hershberger CE, Roy SW, Padgett RA. Comprehensive database and evolutionary dynamics of U12-type introns. Nucleic Acids Research. PMID 32484558 DOI: 10.1093/Nar/Gkaa464 |
0.379 |
|
| 2019 |
Soulette CM, Oliverio O, Roy SW. On the function of trans-splicing: No evidence for widespread proteome diversification in trypanosomes. Genome Biology and Evolution. PMID 31599940 DOI: 10.1093/Gbe/Evz217 |
0.441 |
|
| 2019 |
Roy SW, Bowser BA. Molecular Evolution: RNA Splicing Machinery Moonlights in Junk Removal. Current Biology : Cb. 29: R920-R922. PMID 31593665 DOI: 10.1016/J.Cub.2019.08.046 |
0.339 |
|
| 2019 |
Hudson AJ, McWatters DC, Bowser BA, Moore AN, Larue GE, Roy SW, Russell AG. Patterns of conservation of spliceosomal intron structures and spliceosome divergence in representatives of the diplomonad and parabasalid lineages. Bmc Evolutionary Biology. 19: 162. PMID 31375061 DOI: 10.1186/S12862-019-1488-Y |
0.359 |
|
| 2017 |
Roy SW. Genomic and Transcriptomic Analysis Reveals Spliced Leader Trans-Splicing in Cryptomonads. Genome Biology and Evolution. 9: 468-473. PMID 28391323 DOI: 10.1093/Gbe/Evx012 |
0.494 |
|
| 2017 |
Slabodnick MM, Ruby JG, Reiff SB, Swart EC, Gosai S, Prabakaran S, Witkowska E, Larue GE, Fisher S, Freeman RM, Gunawardena J, Chu W, Stover NA, Gregory BD, Nowacki M, ... ... Roy SW, et al. The Macronuclear Genome of Stentor coeruleus Reveals Tiny Introns in a Giant Cell. Current Biology : Cb. PMID 28190732 DOI: 10.1016/J.Cub.2016.12.057 |
0.365 |
|
| 2017 |
Roy SW. Transcriptomic analysis of diplomonad parasites reveals a trans-spliced intron in a helicase gene in Giardia. Peerj. 5: e2861. PMID 28090405 DOI: 10.7717/Peerj.2861 |
0.439 |
|
| 2016 |
Huff JT, Zilberman D, Roy SW. Mechanism for DNA transposons to generate introns on genomic scales. Nature. PMID 27760113 DOI: 10.1038/Nature20110 |
0.48 |
|
| 2016 |
Roy SW. Is genome complexity a consequence of inefficient selection? Evidence from intron creation in non-recombining regions. Molecular Biology and Evolution. PMID 27655009 DOI: 10.1093/Molbev/Msw172 |
0.479 |
|
| 2016 |
Roy SW. Is mutation random or targeted?: No evidence for hypermutability in snail toxin genes. Molecular Biology and Evolution. PMID 27486220 DOI: 10.1093/Molbev/Msw140 |
0.468 |
|
| 2016 |
Roy SW. How common is parallel intron gain? Rapid evolution versus independent creation in recently created introns in Daphnia. Molecular Biology and Evolution. PMID 27189562 DOI: 10.1093/Molbev/Msw091 |
0.487 |
|
| 2016 |
McDevitt SL, Bredeson JV, Roy SW, Lane JA, Noble JA. HAPCAD: An open-source tool to detect PCR crossovers in next-generation sequencing generated HLA data. Human Immunology. PMID 26802209 DOI: 10.1016/J.Humimm.2016.01.013 |
0.308 |
|
| 2015 |
Roy SW. The Plasmodium gaboni genome illuminates allelic dimorphism of immunologically important surface antigens in P. falciparum. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. PMID 26296605 DOI: 10.1016/J.Meegid.2015.08.014 |
0.306 |
|
| 2015 |
Gao F, Roy SW, Katz LA. Analyses of alternatively processed genes in ciliates provide insights into the origins of scrambled genomes and may provide a mechanism for speciation. Mbio. 6. PMID 25650397 DOI: 10.1128/Mbio.01998-14 |
0.464 |
|
| 2015 |
Roy SW, Ferreira MU. A new model for the origins of allelic dimorphism in Plasmodium falciparum. Parasitology International. 64: 229-37. PMID 25251164 DOI: 10.1016/J.Parint.2014.09.008 |
0.309 |
|
| 2014 |
Lauron EJ, Oakgrove KS, Tell LA, Biskar K, Roy SW, Sehgal RN. Transcriptome sequencing and analysis of Plasmodium gallinaceum reveals polymorphisms and selection on the apical membrane antigen-1. Malaria Journal. 13: 382. PMID 25261185 DOI: 10.1186/1475-2875-13-382 |
0.349 |
|
| 2014 |
Irimia M, Roy SW. Origin of spliceosomal introns and alternative splicing. Cold Spring Harbor Perspectives in Biology. 6. PMID 24890509 DOI: 10.1101/Cshperspect.A016071 |
0.436 |
|
| 2014 |
Roy SW, Irimia M. Diversity and evolution of spliceosomal systems. Methods in Molecular Biology (Clifton, N.J.). 1126: 13-33. PMID 24549653 DOI: 10.1007/978-1-62703-980-2_2 |
0.491 |
|
| 2014 |
Venkatesh B, Lee AP, Ravi V, Maurya AK, Lian MM, Swann JB, Ohta Y, Flajnik MF, Sutoh Y, Kasahara M, Hoon S, Gangu V, Roy SW, Irimia M, Korzh V, et al. Elephant shark genome provides unique insights into gnathostome evolution. Nature. 505: 174-9. PMID 24402279 DOI: 10.1038/Nature12826 |
0.371 |
|
| 2014 |
Venkatesh B, Lee AP, Ravi V, Maurya AK, Lian MM, Swann JB, Ohta Y, Flajnik MF, Sutoh Y, Kasahara M, Hoon S, Gangu V, Roy SW, Irimia M, Korzh V, et al. Corrigendum: Elephant shark genome provides unique insights into gnathostome evolution Nature. 513: 574. DOI: 10.1038/Nature13699 |
0.366 |
|
| 2013 |
Irimia M, Maeso I, Roy SW, Fraser HB. Ancient cis-regulatory constraints and the evolution of genome architecture. Trends in Genetics : Tig. 29: 521-8. PMID 23791467 DOI: 10.1016/J.Tig.2013.05.008 |
0.45 |
|
| 2013 |
Clarke M, Lohan AJ, Liu B, Lagkouvardos I, Roy S, Zafar N, Bertelli C, Schilde C, Kianianmomeni A, Bürglin TR, Frech C, Turcotte B, Kopec KO, Synnott JM, Choo C, et al. Genome of Acanthamoeba castellanii highlights extensive lateral gene transfer and early evolution of tyrosine kinase signaling. Genome Biology. 14: R11. PMID 23375108 DOI: 10.1186/Gb-2013-14-2-R11 |
0.408 |
|
| 2012 |
Curtis BA, Tanifuji G, Burki F, Gruber A, Irimia M, Maruyama S, Arias MC, Ball SG, Gile GH, Hirakawa Y, Hopkins JF, Kuo A, Rensing SA, Schmutz J, Symeonidi A, ... ... Roy SW, et al. Algal genomes reveal evolutionary mosaicism and the fate of nucleomorphs. Nature. 492: 59-65. PMID 23201678 DOI: 10.1038/Nature11681 |
0.435 |
|
| 2012 |
Roy SW, Irimia M. Genome evolution: where do new introns come from? Current Biology : Cb. 22: R529-31. PMID 22790002 DOI: 10.1016/J.Cub.2012.05.017 |
0.359 |
|
| 2012 |
Irimia M, Tena JJ, Alexis MS, Fernandez-Miñan A, Maeso I, Bogdanovic O, de la Calle-Mustienes E, Roy SW, Gómez-Skarmeta JL, Fraser HB. Extensive conservation of ancient microsynteny across metazoans due to cis-regulatory constraints. Genome Research. 22: 2356-67. PMID 22722344 DOI: 10.1101/Gr.139725.112 |
0.465 |
|
| 2012 |
Zhou Q, Zhu HM, Huang QF, Zhao L, Zhang GJ, Roy SW, Vicoso B, Xuan ZL, Ruan J, Zhang Y, Zhao RP, Ye C, Zhang XQ, Wang J, Wang W, et al. Deciphering neo-sex and B chromosome evolution by the draft genome of Drosophila albomicans. Bmc Genomics. 13: 109. PMID 22439699 DOI: 10.1186/1471-2164-13-109 |
0.335 |
|
| 2012 |
Maeso I, Roy SW, Irimia M. Widespread recurrent evolution of genomic features. Genome Biology and Evolution. 4: 486-500. PMID 22417916 DOI: 10.1093/Gbe/Evs022 |
0.396 |
|
| 2012 |
Irimia M, Denuc A, Ferran JL, Pernaute B, Puelles L, Roy SW, Garcia-Fernà ndez J, Marfany G. Evolutionarily conserved A-to-I editing increases protein stability of the alternative splicing factor Nova1. Rna Biology. 9: 12-21. PMID 22258141 DOI: 10.4161/Rna.9.1.18387 |
0.364 |
|
| 2012 |
Roy SW, Hudson AJ, Joseph J, Yee J, Russell AG. Numerous fragmented spliceosomal introns, AT-AC splicing, and an unusual dynein gene expression pathway in Giardia lamblia. Molecular Biology and Evolution. 29: 43-9. PMID 21482665 DOI: 10.1093/Molbev/Msr063 |
0.464 |
|
| 2011 |
Irimia M, Maeso I, Burguera D, Hidalgo-Sánchez M, Puelles L, Roy SW, Garcia-Fernà ndez J, Ferran JL. Contrasting 5' and 3' evolutionary histories and frequent evolutionary convergence in Meis/hth gene structures. Genome Biology and Evolution. 3: 551-64. PMID 21680890 DOI: 10.1093/Gbe/Evr056 |
0.522 |
|
| 2011 |
Irimia M, Denuc A, Burguera D, Somorjai I, MartÃn-Durán JM, Genikhovich G, Jimenez-Delgado S, Technau U, Roy SW, Marfany G, Garcia-Fernà ndez J. Stepwise assembly of the Nova-regulated alternative splicing network in the vertebrate brain. Proceedings of the National Academy of Sciences of the United States of America. 108: 5319-24. PMID 21389270 DOI: 10.1073/Pnas.1012333108 |
0.378 |
|
| 2010 |
Denoeud F, Henriet S, Mungpakdee S, Aury JM, Da Silva C, Brinkmann H, Mikhaleva J, Olsen LC, Jubin C, Cañestro C, Bouquet JM, Danks G, Poulain J, Campsteijn C, Adamski M, ... ... Roy SW, et al. Plasticity of animal genome architecture unmasked by rapid evolution of a pelagic tunicate. Science (New York, N.Y.). 330: 1381-5. PMID 21097902 DOI: 10.1126/Science.1194167 |
0.409 |
|
| 2010 |
Hu X, Guo H, He Y, Wang S, Zhang L, Wang S, Huang X, Roy SW, Lu W, Hu J, Bao Z. Molecular characterization of Myostatin gene from Zhikong scallop Chlamys farreri (Jones et Preston 1904). Genes & Genetic Systems. 85: 207-18. PMID 21041979 DOI: 10.1266/Ggs.85.207 |
0.38 |
|
| 2010 |
Lee RC, Gill EE, Roy SW, Fast NM. Constrained intron structures in a microsporidian. Molecular Biology and Evolution. 27: 1979-82. PMID 20360213 DOI: 10.1093/Molbev/Msq087 |
0.5 |
|
| 2010 |
Irimia M, Maeso I, Gunning PW, Garcia-Fernàndez J, Roy SW. Internal and external paralogy in the evolution of tropomyosin genes in metazoans. Molecular Biology and Evolution. 27: 1504-17. PMID 20147436 DOI: 10.1093/Molbev/Msq018 |
0.485 |
|
| 2009 |
Irimia M, Roy SW, Neafsey DE, Abril JF, Garcia-Fernandez J, Koonin EV. Complex selection on 5' splice sites in intron-rich organisms. Genome Research. 19: 2021-7. PMID 19745111 DOI: 10.1101/Gr.089276.108 |
0.455 |
|
| 2009 |
Roy SW. Intronization, de-intronization and intron sliding are rare in Cryptococcus. Bmc Evolutionary Biology. 9: 192. PMID 19664208 DOI: 10.1186/1471-2148-9-192 |
0.449 |
|
| 2009 |
Roy SW, Irimia M. Splicing in the eukaryotic ancestor: form, function and dysfunction. Trends in Ecology & Evolution. 24: 447-55. PMID 19576657 DOI: 10.1016/J.Tree.2009.04.005 |
0.465 |
|
| 2009 |
Irimia M, Rukov JL, Roy SW. Evolution of alternative splicing regulation: changes in predicted exonic splicing regulators are not associated with changes in alternative splicing levels in primates. Plos One. 4: e5800. PMID 19495418 DOI: 10.1371/Journal.Pone.0005800 |
0.375 |
|
| 2009 |
Roy SW, Weedall GD, da Silva RL, Polley SD, Ferreira MU. Sequence diversity and evolutionary dynamics of the dimorphic antigen merozoite surface protein-6 and other Msp genes of Plasmodium falciparum. Gene. 443: 12-21. PMID 19463923 DOI: 10.1016/J.Gene.2009.05.007 |
0.416 |
|
| 2009 |
Roy SW. Probing evolutionary repeatability: neutral and double changes and the predictability of evolutionary adaptation. Plos One. 4: e4500. PMID 19234610 DOI: 10.1371/Journal.Pone.0004500 |
0.316 |
|
| 2009 |
Roy SW. Phylogenomics: gene duplication, unrecognized paralogy and outgroup choice. Plos One. 4: e4568. PMID 19234600 DOI: 10.1371/Journal.Pone.0004568 |
0.436 |
|
| 2009 |
Irimia M, Rukov JL, Roy SW, Vinther J, Garcia-Fernandez J. Quantitative regulation of alternative splicing in evolution and development. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 31: 40-50. PMID 19154001 DOI: 10.1002/Bies.080092 |
0.442 |
|
| 2009 |
Roy SW, Irimia M. Mystery of intron gain: new data and new models. Trends in Genetics : Tig. 25: 67-73. PMID 19070397 DOI: 10.1016/J.Tig.2008.11.004 |
0.353 |
|
| 2008 |
Hoogewijs D, De Henau S, Dewilde S, Moens L, Couvreur M, Borgonie G, Vinogradov SN, Roy SW, Vanfleteren JR. The Caenorhabditis globin gene family reveals extensive nematode-specific radiation and diversification. Bmc Evolutionary Biology. 8: 279. PMID 18844991 DOI: 10.1186/1471-2148-8-279 |
0.45 |
|
| 2008 |
Irimia M, Roy SW. Evolutionary convergence on highly-conserved 3' intron structures in intron-poor eukaryotes and insights into the ancestral eukaryotic genome. Plos Genetics. 4: e1000148. PMID 18688272 DOI: 10.1371/Journal.Pgen.1000148 |
0.485 |
|
| 2008 |
Irimia M, Rukov JL, Penny D, Vinther J, Garcia-Fernandez J, Roy SW. Origin of introns by 'intronization' of exonic sequences. Trends in Genetics : Tig. 24: 378-81. PMID 18597887 DOI: 10.1016/J.Tig.2008.05.007 |
0.438 |
|
| 2008 |
Roy SW, Irimia M. When good transcripts go bad: artifactual RT-PCR 'splicing' and genome analysis. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 30: 601-5. PMID 18478540 DOI: 10.1002/Bies.20749 |
0.465 |
|
| 2008 |
Roy SW, Irimia M. Origins of human malaria: rare genomic changes and full mitochondrial genomes confirm the relationship of Plasmodium falciparum to other mammalian parasites but complicate the origins of Plasmodium vivax. Molecular Biology and Evolution. 25: 1192-8. PMID 18359945 DOI: 10.1093/Molbev/Msn069 |
0.406 |
|
| 2008 |
Roy SW, Irimia M. Intron mis-splicing: no alternative? Genome Biology. 9: 208. PMID 18304372 DOI: 10.1186/Gb-2008-9-2-208 |
0.301 |
|
| 2008 |
Amodu OK, Hartl DL, Roy SW. Patterns of polymorphism in genomic regions flanking three highly polymorphic surface antigens in Plasmodium falciparum. Molecular and Biochemical Parasitology. 159: 1-6. PMID 18291540 DOI: 10.1016/J.Molbiopara.2007.12.004 |
0.422 |
|
| 2008 |
Roy SW, Irimia M. Rare genomic characters do not support Coelomata: intron loss/gain. Molecular Biology and Evolution. 25: 620-3. PMID 18281272 DOI: 10.1093/Molbev/Msn035 |
0.378 |
|
| 2008 |
Irimia M, Roy SW. Spliceosomal introns as tools for genomic and evolutionary analysis. Nucleic Acids Research. 36: 1703-12. PMID 18263615 DOI: 10.1093/Nar/Gkn012 |
0.452 |
|
| 2008 |
Irimia M, Rukov JL, Penny D, Garcia-Fernandez J, Vinther J, Roy SW. Widespread evolutionary conservation of alternatively spliced exons in Caenorhabditis. Molecular Biology and Evolution. 25: 375-82. PMID 18048400 DOI: 10.1093/Molbev/Msm262 |
0.455 |
|
| 2008 |
Roy SW, Ferreira MU, Hartl DL. Evolution of allelic dimorphism in malarial surface antigens. Heredity. 100: 103-10. PMID 17021615 DOI: 10.1038/Sj.Hdy.6800887 |
0.335 |
|
| 2007 |
Stajich JE, Dietrich FS, Roy SW. Comparative genomic analysis of fungal genomes reveals intron-rich ancestors. Genome Biology. 8: R223. PMID 17949488 DOI: 10.1186/Gb-2007-8-10-R223 |
0.512 |
|
| 2007 |
Irimia M, Rukov JL, Penny D, Roy SW. Functional and evolutionary analysis of alternatively spliced genes is consistent with an early eukaryotic origin of alternative splicing. Bmc Evolutionary Biology. 7: 188. PMID 17916237 DOI: 10.1186/1471-2148-7-188 |
0.483 |
|
| 2007 |
Roy SW, Penny D. Intron length distributions and gene prediction. Nucleic Acids Research. 35: 4737-42. PMID 17617639 DOI: 10.1093/Nar/Gkm281 |
0.435 |
|
| 2007 |
Irimia M, Maeso I, Penny D, Garcia-Fernàndez J, Roy SW. Rare coding sequence changes are consistent with Ecdysozoa, not Coelomata. Molecular Biology and Evolution. 24: 1604-7. PMID 17525471 DOI: 10.1093/Molbev/Msm105 |
0.376 |
|
| 2007 |
Roy SW, Penny D. Widespread intron loss suggests retrotransposon activity in ancient apicomplexans. Molecular Biology and Evolution. 24: 1926-33. PMID 17522085 DOI: 10.1093/Molbev/Msm102 |
0.419 |
|
| 2007 |
Roy SW, Penny D. On the incidence of intron loss and gain in paralogous gene families. Molecular Biology and Evolution. 24: 1579-81. PMID 17470438 DOI: 10.1093/Molbev/Msm082 |
0.421 |
|
| 2007 |
Irimia M, Penny D, Roy SW. Coevolution of genomic intron number and splice sites. Trends in Genetics : Tig. 23: 321-5. PMID 17442445 DOI: 10.1016/J.Tig.2007.04.001 |
0.455 |
|
| 2007 |
Roy SW, Penny D, Neafsey DE. Evolutionary conservation of UTR intron boundaries in Cryptococcus. Molecular Biology and Evolution. 24: 1140-8. PMID 17374879 DOI: 10.1093/Molbev/Msm045 |
0.453 |
|
| 2007 |
Roy SW, Penny D. A very high fraction of unique intron positions in the intron-rich diatom Thalassiosira pseudonana indicates widespread intron gain. Molecular Biology and Evolution. 24: 1447-57. PMID 17350938 DOI: 10.1093/Molbev/Msm048 |
0.467 |
|
| 2007 |
Roy SW, Penny D. Patterns of intron loss and gain in plants: intron loss-dominated evolution and genome-wide comparison of O. sativa and A. thaliana. Molecular Biology and Evolution. 24: 171-81. PMID 17065597 DOI: 10.1093/Molbev/Msl159 |
0.431 |
|
| 2006 |
Roy SW, Penny D. Large-scale intron conservation and order-of-magnitude variation in intron loss/gain rates in apicomplexan evolution. Genome Research. 16: 1270-5. PMID 16963708 DOI: 10.1101/Gr.5410606 |
0.424 |
|
| 2006 |
Roy SW, Penny D. Smoke without fire: most reported cases of intron gain in nematodes instead reflect intron losses. Molecular Biology and Evolution. 23: 2259-62. PMID 16943250 DOI: 10.1093/Molbev/Msl098 |
0.388 |
|
| 2006 |
Roy SW. Intron-rich ancestors. Trends in Genetics : Tig. 22: 468-71. PMID 16857287 DOI: 10.1016/J.Tig.2006.07.002 |
0.49 |
|
| 2006 |
Roy SW, Irimia M, Penny D. Very little intron gain in Entamoeba histolytica genes laterally transferred from prokaryotes. Molecular Biology and Evolution. 23: 1824-7. PMID 16847043 DOI: 10.1093/Molbev/Msl061 |
0.421 |
|
| 2006 |
Roy SW, Hartl DL. Very little intron loss/gain in Plasmodium: intron loss/gain mutation rates and intron number. Genome Research. 16: 750-6. PMID 16702411 DOI: 10.1101/Gr.4845406 |
0.439 |
|
| 2006 |
Roy SW, Gilbert W. The evolution of spliceosomal introns: patterns, puzzles and progress. Nature Reviews. Genetics. 7: 211-21. PMID 16485020 DOI: 10.1038/Nrg1807 |
0.576 |
|
| 2005 |
Roy SW, Gilbert W. Rates of intron loss and gain: implications for early eukaryotic evolution. Proceedings of the National Academy of Sciences of the United States of America. 102: 5773-8. PMID 15827119 DOI: 10.1073/Pnas.0500383102 |
0.551 |
|
| 2005 |
Roy SW, Gilbert W. Resolution of a deep animal divergence by the pattern of intron conservation. Proceedings of the National Academy of Sciences of the United States of America. 102: 4403-8. PMID 15769859 DOI: 10.1073/Pnas.0409891102 |
0.524 |
|
| 2005 |
Roy SW, Gilbert W. Complex early genes. Proceedings of the National Academy of Sciences of the United States of America. 102: 1986-91. PMID 15687506 DOI: 10.1073/Pnas.0408355101 |
0.589 |
|
| 2005 |
Roy SW, Gilbert W. The pattern of intron loss. Proceedings of the National Academy of Sciences of the United States of America. 102: 713-8. PMID 15642949 DOI: 10.1073/Pnas.0408274102 |
0.635 |
|
| 2004 |
Roy SW. The origin of recent introns: transposons? Genome Biology. 5: 251. PMID 15575977 DOI: 10.1186/Gb-2004-5-12-251 |
0.408 |
|
| 2003 |
Fedorov A, Roy S, Fedorova L, Gilbert W. Mystery of intron gain. Genome Research. 13: 2236-41. PMID 12975308 DOI: 10.1101/Gr.1029803 |
0.606 |
|
| 2003 |
Roy SW, Fedorov A, Gilbert W. Large-scale comparison of intron positions in mammalian genes shows intron loss but no gain. Proceedings of the National Academy of Sciences of the United States of America. 100: 7158-62. PMID 12777620 DOI: 10.1073/Pnas.1232297100 |
0.616 |
|
| 2003 |
Fedorov A, Roy S, Cao X, Gilbert W. Phylogenetically older introns strongly correlate with module boundaries in ancient proteins. Genome Research. 13: 1155-7. PMID 12743017 DOI: 10.1101/Gr.1008203 |
0.593 |
|
| 2002 |
Roy SW, Fedorov A, Gilbert W. The signal of ancient introns is obscured by intron density and homolog number. Proceedings of the National Academy of Sciences of the United States of America. 99: 15513-7. PMID 12432089 DOI: 10.1073/Pnas.242600199 |
0.612 |
|
| 2002 |
Nosaka M, Arakawa Y, Noda Y, Khatima PK, Roy SW, Gilbert W. 1L1115 Structural features of protein modules and their introns. Seibutsu Butsuri. 42: S68. DOI: 10.2142/Biophys.42.S68_4 |
0.489 |
|
| 2001 |
Fedorov A, Cao X, Saxonov S, de Souza SJ, Roy SW, Gilbert W. Intron distribution difference for 276 ancient and 131 modern genes suggests the existence of ancient introns. Proceedings of the National Academy of Sciences of the United States of America. 98: 13177-82. PMID 11687643 DOI: 10.1073/Pnas.231491498 |
0.596 |
|
| 2001 |
Roy SW, Lewis BP, Fedorov A, Gilbert W. Footprints of primordial introns on the eukaryotic genome. Trends in Genetics : Tig. 17: 496-501. PMID 11530796 DOI: 10.1016/S0168-9525(01)02375-7 |
0.598 |
|
| 1999 |
Roy SW, Nosaka M, de Souza SJ, Gilbert W. Centripetal modules and ancient introns. Gene. 238: 85-91. PMID 10570987 DOI: 10.1016/S0378-1119(99)00292-9 |
0.586 |
|
| 1998 |
De Souza SJ, Long M, Klein RJ, Roy S, Lin S, Gilbert W. Toward a resolution of the introns early/late debate: Only phase zero introns are correlated with the structure of ancient proteins Proceedings of the National Academy of Sciences of the United States of America. 95: 5094-5099. PMID 9560234 DOI: 10.1073/Pnas.95.9.5094 |
0.676 |
|
| 1997 |
de Souza SJ, Long M, Schoenbach L, Roy SW, Gilbert W. The correlation between introns and the three-dimensional structure of proteins. Gene. 205: 141-4. PMID 9461387 DOI: 10.1016/S0378-1119(97)00401-0 |
0.647 |
|
| 1996 |
de Souza SJ, Long M, Schoenbach L, Roy SW, Gilbert W. Intron positions correlate with module boundaries in ancient proteins. Proceedings of the National Academy of Sciences of the United States of America. 93: 14632-6. PMID 8962105 DOI: 10.1073/Pnas.93.25.14632 |
0.656 |
|
| Low-probability matches (unlikely to be authored by this person) |
| 2020 |
Caudill VR, Qin S, Winstead R, Kaur J, Tisthammer K, Pineda EG, Solis C, Cobey S, Bedford T, Carja O, Eggo RM, Koelle K, Lythgoe K, Regoes R, Roy S, et al. CpG-creating mutations are costly in many human viruses. Evolutionary Ecology. 34: 339-359. PMID 32508375 DOI: 10.1007/S10682-020-10039-Z |
0.291 |
|
| 2021 |
Sales-Lee J, Perry DS, Bowser BA, Diedrich JK, Rao B, Beusch I, Yates JR, Roy SW, Madhani HD. Coupling of spliceosome complexity to intron diversity. Current Biology : Cb. PMID 34555349 DOI: 10.1016/j.cub.2021.09.004 |
0.29 |
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| 2008 |
Roy SW, Irimia M. Rare genomic characters do not support Coelomata: RGC_CAMs. Journal of Molecular Evolution. 66: 308-15. PMID 18320261 DOI: 10.1007/S00239-008-9077-5 |
0.287 |
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| 1989 |
Husain Z, Fei Y, Roy S, Solt DB, Polverini PJ, Biswas DK. Sequential expression and cooperative interaction of c-Ha-ras and c-erbB genes in in vivo chemical carcinogenesis Proceedings of the National Academy of Sciences of the United States of America. 86: 1264-1268. PMID 2493153 DOI: 10.1073/Pnas.86.4.1264 |
0.275 |
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| 2010 |
Brown KM, Costanzo MS, Xu W, Roy S, Lozovsky ER, Hartl DL. Compensatory mutations restore fitness during the evolution of dihydrofolate reductase. Molecular Biology and Evolution. 27: 2682-90. PMID 20576759 DOI: 10.1093/Molbev/Msq160 |
0.275 |
|
| 2021 |
Roy SW. Dual Fertilization, Intragenomic Conflict, Genome Downsizing, and Angiosperm Dominance. Trends in Plant Science. PMID 34108106 DOI: 10.1016/j.tplants.2021.05.003 |
0.252 |
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| 2023 |
Fiutek N, Couger MB, Pirro S, Roy SW, de la Torre JR, Connor EF. Genomic Assessment of the Contribution of the Endosymbiont of to Gall Induction. International Journal of Molecular Sciences. 24. PMID 37298563 DOI: 10.3390/ijms24119613 |
0.252 |
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| 2017 |
Roy SW. Intragenomic conflict and immune tolerance: do selfish X-linked alleles drive skewed X chromosome inactivation? Genome Biology and Evolution. PMID 29092048 DOI: 10.1093/Gbe/Evx221 |
0.246 |
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| 2003 |
Roy SW. Recent evidence for the exon theory of genes. Genetica. 118: 251-66. PMID 12868614 DOI: 10.1023/A:1024190617462 |
0.239 |
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| 2018 |
Owens MT, Trujillo G, Seidel SB, Harrison CD, Farrar KM, Benton HP, Blair JR, Boyer KE, Breckler JL, Burrus LW, Byrd DT, Caporale N, Carpenter EJ, Chan YM, Chen JC, ... ... Roy SW, et al. Collectively Improving Our Teaching: Attempting Biology Department-wide Professional Development in Scientific Teaching. Cbe Life Sciences Education. 17. PMID 29326102 DOI: 10.1187/Cbe.17-06-0106 |
0.231 |
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| 2022 |
Anderson N, Jaron KS, Hodson CN, Couger MB, Ševčík J, Weinstein B, Pirro S, Ross L, Roy SW. Gene-rich X chromosomes implicate intragenomic conflict in the evolution of bizarre genetic systems. Proceedings of the National Academy of Sciences of the United States of America. 119: e2122580119. PMID 35653559 DOI: 10.1073/pnas.2122580119 |
0.229 |
|
| 2017 |
Owens MT, Seidel SB, Wong M, Bejines TE, Lietz S, Perez JR, Sit S, Subedar ZS, Acker GN, Akana SF, Balukjian B, Benton HP, Blair JR, Boaz SM, Boyer KE, ... ... Roy SW, et al. Classroom sound can be used to classify teaching practices in college science courses. Proceedings of the National Academy of Sciences of the United States of America. PMID 28265087 DOI: 10.1073/Pnas.1618693114 |
0.228 |
|
| 2020 |
Caudill VR, Qin S, Winstead R, Kaur J, Tisthammer K, Pineda EG, Solis C, Cobey S, Bedford T, Carja O, Eggo RM, Koelle K, Lythgoe K, Regoes R, Roy S, et al. Correction to: CpG‑creating mutations are costly in many human viruses Evolutionary Ecology. 34: 361-362. DOI: 10.1007/S10682-020-10052-2 |
0.228 |
|
| 2021 |
Roy SW. Costly circRNAs, Effective Population Size, and the Origins of Molecular Complexity. Journal of Molecular Evolution. PMID 34698879 DOI: 10.1007/s00239-021-10033-1 |
0.227 |
|
| 2019 |
Harrison CD, Nguyen TA, Seidel SB, Escobedo AM, Hartman C, Lam K, Liang KS, Martens M, Acker GN, Akana SF, Balukjian B, Benton HP, Blair JR, Boaz SM, Boyer KE, ... ... Roy SW, et al. Investigating Instructor Talk in Novel Contexts: Widespread Use, Unexpected Categories, and an Emergent Sampling Strategy. Cbe Life Sciences Education. 18: ar47. PMID 31469624 DOI: 10.1187/Cbe.18-10-0215 |
0.223 |
|
| 2022 |
Roy SW. Digest: Detecting genomic adaptation to sexual selection at scale using available data. Evolution; International Journal of Organic Evolution. PMID 36097360 DOI: 10.1111/evo.14627 |
0.223 |
|
| 2020 |
Alexander S, Sabina Y, George VD, Jacob S, Elias EJ, Joseph JE, Athul T, Bindra M, Roy S, Varughese S. SUN-392 Crescentic Glomerulonephritis: A Single Center Observational Cohort Study On The Clinico-pathological Features And Follow-up Outcomes Kidney International Reports. 5. DOI: 10.1016/J.Ekir.2020.02.932 |
0.213 |
|
| 2022 |
Levesque L, Salazar N, Roy SW. Distinct Minor Splicing Patterns across Cancers. Genes. 13. PMID 35205431 DOI: 10.3390/genes13020387 |
0.209 |
|
| 2008 |
Roy SW, Irimia M. Origins of human malaria: Rare genomic changes and full mitochondrial genomes confirm the relationship of Plasmodium falciparum to other mammalian parasites but complicate the origins of Plasmodium vivax (Molecular Biology and Evolution (2008) 25,6, (1192-1198) DOI: 10.1093/molbev/msn069) Molecular Biology and Evolution. 25. DOI: 10.1093/molbev/msn191 |
0.205 |
|
| 2020 |
Alexander S, Yusuf S, George VD, Jacob S, Elias EJ, Joseph JE, Thomas A, Bindra M, Roy S, Varughese S. SAT-378 De-novo and recurrent glomerulonephritis in renal allograft recipients – a single centre experience Kidney International Reports. 5. DOI: 10.1016/J.Ekir.2020.02.401 |
0.191 |
|
| 2021 |
Roddy AB, Alvarez-Ponce D, Roy SW. Mammals with small populations do not exhibit larger genomes. Molecular Biology and Evolution. PMID 33956142 DOI: 10.1093/molbev/msab142 |
0.183 |
|
| 2020 |
Venkatesh B, Lee AP, Ravi V, Maurya AK, Lian MM, Swann JB, Ohta Y, Flajnik MF, Sutoh Y, Kasahara M, Hoon S, Gangu V, Roy SW, Irimia M, Korzh V, et al. Author Correction: Elephant shark genome provides unique insights into gnathostome evolution. Nature. PMID 33214712 DOI: 10.1038/s41586-020-2967-4 |
0.182 |
|
| 2021 |
Levesque LA, Roy S, Salazar N. CXCR3 Expression and Genome-Wide 3' Splice Site Selection in the TCGA Breast Cancer Cohort. Life (Basel, Switzerland). 11. PMID 34440489 DOI: 10.3390/life11080746 |
0.173 |
|
| 2024 |
Roy SW. Digest: Rare male offspring highlight an alternative pathway to obligate asexuality. Evolution; International Journal of Organic Evolution. PMID 38206675 DOI: 10.1093/evolut/qpad222 |
0.173 |
|
| 2008 |
Roy SW, Irimia M. In response to letter from Benoit Chabot Bioessays. 30: 1257-1258. DOI: 10.1002/Bies.20841 |
0.167 |
|
| 2021 |
Roy SW. How did a novel X-linked gene become essential for male determination? Cell Research. PMID 34711939 DOI: 10.1038/s41422-021-00577-8 |
0.162 |
|
| 2023 |
Ekwealor JTB, Roy SW. Sex chromosomes: How to make a hermaphrodite. Current Biology : Cb. 33: R1150-R1152. PMID 37935128 DOI: 10.1016/j.cub.2023.09.038 |
0.161 |
|
| 2024 |
Roy SW. Digest: A sex chromosome driver without a sperm deficit. Evolution; International Journal of Organic Evolution. PMID 38224497 DOI: 10.1093/evolut/qpae002 |
0.157 |
|
| 2021 |
Roy SW. CRISPR-Cas Toxin-Antitoxin Systems: Selfishness as a Constructive Evolutionary Force. Trends in Microbiology. PMID 34376346 DOI: 10.1016/j.tim.2021.07.005 |
0.156 |
|
| 2015 |
Roy SW. The Plasmodium gaboni genome illuminates allelic dimorphism of immunologically important surface antigens in P. falciparum Infection, Genetics and Evolution. DOI: 10.1016/j.meegid.2015.08.014 |
0.15 |
|
| 2021 |
Roy SW. Digest: Three sexes from two loci in one genome: a haploid alga expands the diversity of trioecious species. Evolution; International Journal of Organic Evolution. PMID 34486115 DOI: 10.1111/evo.14345 |
0.149 |
|
| 2021 |
Roy SW. On the utility of oddities: exceptional bee reproduction illuminates fundamental questions of recombination. Proceedings. Biological Sciences. 288: 20211478. PMID 34404256 DOI: 10.1098/rspb.2021.1478 |
0.145 |
|
| 2022 |
Rodrigues JR, Roy SW, Sehgal RNM. Novel RNA viruses associated with avian haemosporidian parasites. Plos One. 17: e0269881. PMID 35771829 DOI: 10.1371/journal.pone.0269881 |
0.142 |
|
| 2022 |
Roy SW. Digest: Study associates squamate rates, traits, and climates. Evolution; International Journal of Organic Evolution. PMID 35266557 DOI: 10.1111/evo.14465 |
0.14 |
|
| 2022 |
Roy SW. Digest: Recurrent evolution of worker production by interspecific hybridization in harvester ants: Parasitism or kludge? Evolution; International Journal of Organic Evolution. PMID 36097357 DOI: 10.1111/evo.14611 |
0.139 |
|
| 1980 |
Rose GD, Roy S. Hydrophobic basis of packing in globular proteins Proceedings of the National Academy of Sciences of the United States of America. 77: 4643-4647. PMID 6933513 DOI: 10.1073/Pnas.77.8.4643 |
0.138 |
|
| 2021 |
Couger MB, Roy SW, Anderson N, Gozashti L, Pirro S, Millward LS, Kim M, Kilburn D, Liu KJ, Wilson TM, Epps CW, Dizney L, Ruedas LA, Campbell P. Sex chromosome transformation and the origin of a male-specific X chromosome in the creeping vole. Science (New York, N.Y.). 372: 592-600. PMID 33958470 DOI: 10.1126/science.abg7019 |
0.124 |
|
| 2021 |
Roy SW. Haldane's duel: intragenomic conflict, selfish Y chromosomes and speciation. Trends in Genetics : Tig. PMID 34167831 DOI: 10.1016/j.tig.2021.05.008 |
0.109 |
|
| 2024 |
Roy SW. Digest: Mating systems, intragenomic conflict, and speciation. Evolution; International Journal of Organic Evolution. PMID 38198721 DOI: 10.1093/evolut/qpad230 |
0.108 |
|
| 2022 |
Roy SW. How illuminates why in plant germline methylation. Trends in Plant Science. PMID 35074266 DOI: 10.1016/j.tplants.2022.01.001 |
0.103 |
|
| 2021 |
Roy SW. Sex determination: Ant supergenes link sex ratio to social structure. Current Biology : Cb. 31: R1573-R1575. PMID 34932965 DOI: 10.1016/j.cub.2021.11.017 |
0.1 |
|
| 2023 |
Roy SW. Did the creeping vole sex chromosomes evolve through a cascade of adaptive responses to a selfish x chromosome? Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 45: e2100164. PMID 37941456 DOI: 10.1002/bies.202100164 |
0.09 |
|
| 2022 |
Roy SW. Optimality versus opportunity the recurrent evolution of similar sex determination mechanisms. The Journal of Heredity. PMID 35325170 DOI: 10.1093/jhered/esac001 |
0.086 |
|
| 2021 |
Roy SW. Inbreeding, male viability, and the remarkable evolutionary stability of the aphid X chromosome. Heredity. PMID 33993199 DOI: 10.1038/s41437-021-00440-x |
0.083 |
|
| 2021 |
Roy SW. On the form and origins of the bizarre sex chromosomal system of the mandarin vole. The Journal of Heredity. PMID 33884423 DOI: 10.1093/jhered/esab020 |
0.07 |
|
| 2003 |
Chirwa LC, Hammond PA, Roy S, Cumming DR. Electromagnetic radiation from ingested sources in the human intestine between 150 MHz and 1.2 GHz. Ieee Transactions On Bio-Medical Engineering. 50: 484-92. PMID 12723060 DOI: 10.1109/Tbme.2003.809474 |
0.06 |
|
| 2022 |
Roy SW. Digest: Social context underlies subordinate status in a primitively social bee. Evolution; International Journal of Organic Evolution. PMID 36148957 DOI: 10.1111/evo.14619 |
0.04 |
|
| 2009 |
Reid D, Millar C, Roy S, Roy G, Sinnott R, Stewart G, Stewart G, Asenov A. Enabling cutting-edge semiconductor simulation through grid technology. Philosophical Transactions. Series a, Mathematical, Physical, and Engineering Sciences. 367: 2573-84. PMID 19451111 DOI: 10.1098/rsta.2009.0031 |
0.021 |
|
| 2005 |
Roy S, Asenov A. Applied physics. Where do the dopants go? Science (New York, N.Y.). 309: 388-90. PMID 16020718 DOI: 10.1126/science.1111104 |
0.01 |
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