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Johannes Rudolph - Publications

Affiliations: 
Duke University, Durham, NC 
Area:
Biochemistry
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48 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Rudolph J, Mahadevan J, Luger K. Probing the Conformational Changes Associated with DNA-Binding to PARP1. Biochemistry. PMID 32357296 DOI: 10.1021/Acs.Biochem.0C00256  0.308
2019 Nakamoto MY, Rudolph J, Wuttke DS, Luger K. Nonspecific Binding of RNA to PARP1 and PARP2 Does Not Lead to Catalytic Activation. Biochemistry. PMID 31829559 DOI: 10.1021/Acs.Biochem.9B00986  0.31
2019 Rudolph J, Luger K. Kinetics of DNA-protein association and dissociation by stopped-flow spectroscopy. Methods in Enzymology. 625: 135-156. PMID 31455524 DOI: 10.1016/Bs.Mie.2019.04.025  0.319
2019 Pegram LM, Liddle JC, Xiao Y, Hoh M, Rudolph J, Iverson DB, Vigers GP, Smith D, Zhang H, Wang W, Moffat JG, Ahn NG. Activation loop dynamics are controlled by conformation-selective inhibitors of ERK2. Proceedings of the National Academy of Sciences of the United States of America. PMID 31311868 DOI: 10.1073/Pnas.1906824116  0.451
2019 Mahadevan J, Rudolph J, Jha A, Tay JW, Dragavon J, Grumstrup EM, Luger K. Q-FADD: A Mechanistic Approach for Modeling the Accumulation of Proteins at Sites of DNA Damage. Biophysical Journal. PMID 31109734 DOI: 10.1016/J.Bpj.2019.04.032  0.355
2015 Rudolph J, Xiao Y, Pardi A, Ahn NG. Slow inhibition and conformation selective properties of extracellular signal-regulated kinase 1 and 2 inhibitors. Biochemistry. 54: 22-31. PMID 25350931 DOI: 10.1021/Bi501101V  0.489
2014 Rudolph J, Erbse AH, Behlen LS, Copley SD. A radical intermediate in the conversion of pentachlorophenol to tetrachlorohydroquinone by Sphingobium chlorophenolicum. Biochemistry. 53: 6539-49. PMID 25238136 DOI: 10.1021/Bi5010427  0.354
2013 Yadid I, Rudolph J, Hlouchova K, Copley SD. Sequestration of a highly reactive intermediate in an evolving pathway for degradation of pentachlorophenol. Proceedings of the National Academy of Sciences of the United States of America. 110: E2182-90. PMID 23676275 DOI: 10.1073/Pnas.1214052110  0.305
2012 Hlouchova K, Rudolph J, Pietari JM, Behlen LS, Copley SD. Pentachlorophenol hydroxylase, a poorly functioning enzyme required for degradation of pentachlorophenol by Sphingobium chlorophenolicum. Biochemistry. 51: 3848-60. PMID 22482720 DOI: 10.1021/Bi300261P  0.392
2010 Rudolph J, Kim J, Copley SD. Multiple turnovers of the nicotino-enzyme PdxB require α-keto acids as cosubstrates. Biochemistry. 49: 9249-55. PMID 20831184 DOI: 10.1021/Bi101291D  0.312
2009 Parks JM, Hu H, Rudolph J, Yang W. Mechanism of Cdc25B phosphatase with the small molecule substrate p-nitrophenyl phosphate from QM/MM-MFEP calculations. The Journal of Physical Chemistry. B. 113: 5217-24. PMID 19301836 DOI: 10.1021/Jp805137X  0.487
2009 Chen CY, Willard D, Rudolph J. Redox regulation of SH2-domain-containing protein tyrosine phosphatases by two backdoor cysteines. Biochemistry. 48: 1399-409. PMID 19166311 DOI: 10.1021/Bi801973Z  0.403
2007 Keaton MA, Bardes ES, Marquitz AR, Freel CD, Zyla TR, Rudolph J, Lew DJ. Differential susceptibility of yeast S and M phase CDK complexes to inhibitory tyrosine phosphorylation. Current Biology : Cb. 17: 1181-9. PMID 17614281 DOI: 10.1016/J.Cub.2007.05.075  0.457
2007 Headd JJ, Ban YE, Brown P, Edelsbrunner H, Vaidya M, Rudolph J. Protein-protein interfaces: properties, preferences, and projections. Journal of Proteome Research. 6: 2576-86. PMID 17542628 DOI: 10.1021/Pr070018+  0.359
2007 Rudolph J. Cdc25 phosphatases: structure, specificity, and mechanism. Biochemistry. 46: 3595-604. PMID 17328562 DOI: 10.1021/Bi700026J  0.499
2007 Rudolph J. Inhibiting transient protein-protein interactions: lessons from the Cdc25 protein tyrosine phosphatases. Nature Reviews. Cancer. 7: 202-11. PMID 17287826 DOI: 10.1038/Nrc2087  0.427
2007 Sohn J, Buhrman G, Rudolph J. Kinetic and structural studies of specific protein-protein interactions in substrate catalysis by Cdc25B phosphatase. Biochemistry. 46: 807-18. PMID 17223702 DOI: 10.1021/Bi061257Y  0.451
2007 Baron RA, Peterson YK, Otto JC, Rudolph J, Casey PJ. Time-dependent inhibition of isoprenylcysteine carboxyl methyltransferase by indole-based small molecules. Biochemistry. 46: 554-60. PMID 17209565 DOI: 10.1021/Bi060344N  0.399
2007 Sohn J, Rudolph J. Temperature dependence of binding and catalysis for the Cdc25B phosphatase. Biophysical Chemistry. 125: 549-55. PMID 17174465 DOI: 10.1016/J.Bpc.2006.11.005  0.415
2006 Seth D, Rudolph J. Redox control of cell cycle progression via Cdc25 phosphatase (Mih1p) in S. cerevisiae. Cell Cycle (Georgetown, Tex.). 5: 2172-3. PMID 16969116 DOI: 10.4161/Cc.5.18.3252  0.542
2006 Sohn J, Rudolph J. The energetic network of hotspot residues between Cdc25B phosphatase and its protein substrate. Journal of Molecular Biology. 362: 1060-71. PMID 16950393 DOI: 10.1016/J.Jmb.2006.07.090  0.427
2006 Seth D, Rudolph J. Redox regulation of MAP kinase phosphatase 3. Biochemistry. 45: 8476-87. PMID 16834321 DOI: 10.1021/Bi060157P  0.453
2006 Kristjánsdóttir K, Safi A, Shah C, Rudolph J. Autophosphorylation of Ser66 on Xenopus Myt1 is a prerequisite for meiotic inactivation of Myt1. Cell Cycle (Georgetown, Tex.). 5: 421-7. PMID 16481744 DOI: 10.4161/Cc.5.4.2492  0.741
2006 Ban YA, Edelsbrunner H, Rudolph J. Interface surfaces for protein-protein complexes Journal of the Acm. 53: 361-378. DOI: 10.1145/1147954.1147957  0.319
2005 McClerren AL, Endsley S, Bowman JL, Andersen NH, Guan Z, Rudolph J, Raetz CR. A slow, tight-binding inhibitor of the zinc-dependent deacetylase LpxC of lipid A biosynthesis with antibiotic activity comparable to ciprofloxacin. Biochemistry. 44: 16574-83. PMID 16342948 DOI: 10.1021/Bi0518186  0.356
2005 Sohn J, Parks JM, Buhrman G, Brown P, Kristjánsdóttir K, Safi A, Edelsbrunner H, Yang W, Rudolph J. Experimental validation of the docking orientation of Cdc25 with its Cdk2-CycA protein substrate. Biochemistry. 44: 16563-73. PMID 16342947 DOI: 10.1021/Bi0516879  0.742
2005 Rudolph J. Reactivity of Cdc25 phosphatase at low pH and with thiophosphorylated protein substrate. Bioorganic Chemistry. 33: 264-73. PMID 16023486 DOI: 10.1016/J.Bioorg.2005.01.004  0.434
2005 Rudolph J. Redox regulation of the Cdc25 phosphatases. Antioxidants & Redox Signaling. 7: 761-7. PMID 15890022 DOI: 10.1089/Ars.2005.7.761  0.39
2005 Buhrman G, Parker B, Sohn J, Rudolph J, Mattos C. Structural mechanism of oxidative regulation of the phosphatase Cdc25B via an intramolecular disulfide bond. Biochemistry. 44: 5307-16. PMID 15807524 DOI: 10.1021/Bi047449F  0.389
2005 Coggins BE, McClerren AL, Jiang L, Li X, Rudolph J, Hindsgaul O, Raetz CR, Zhou P. Refined solution structure of the LpxC-TU-514 complex and pKa analysis of an active site histidine: insights into the mechanism and inhibitor design. Biochemistry. 44: 1114-26. PMID 15667205 DOI: 10.1021/Bi047820Z  0.435
2005 McClerren AL, Zhou P, Guan Z, Raetz CR, Rudolph J. Kinetic analysis of the zinc-dependent deacetylase in the lipid A biosynthetic pathway. Biochemistry. 44: 1106-13. PMID 15667204 DOI: 10.1021/Bi048001H  0.318
2004 Sohn J, Kristjánsdóttir K, Safi A, Parker B, Kiburz B, Rudolph J. Remote hot spots mediate protein substrate recognition for the Cdc25 phosphatase. Proceedings of the National Academy of Sciences of the United States of America. 101: 16437-41. PMID 15534213 DOI: 10.1073/Pnas.0407663101  0.753
2004 Kristjánsdóttir K, Rudolph J. Cdc25 Phosphatases and Cancer Chemistry & Biology. 11: 1043-1051. PMID 15324805 DOI: 10.1016/J.Chembiol.2004.07.007  0.703
2004 Rudolph J. Targeting the neighbor's pool. Molecular Pharmacology. 66: 780-2. PMID 15258253 DOI: 10.1124/Mol.104.004788  0.305
2004 Kwiek JJ, Haystead TA, Rudolph J. Kinetic mechanism of quinone oxidoreductase 2 and its inhibition by the antimalarial quinolines. Biochemistry. 43: 4538-47. PMID 15078100 DOI: 10.1021/Bi035923W  0.356
2003 Sohn J, Rudolph J. Catalytic and chemical competence of regulation of cdc25 phosphatase by oxidation/reduction. Biochemistry. 42: 10060-70. PMID 12939134 DOI: 10.1021/Bi0345081  0.442
2003 Sohn J, Kiburz B, Li Z, Deng L, Safi A, Pirrung MC, Rudolph J. Inhibition of Cdc25 phosphatases by indolyldihydroxyquinones. Journal of Medicinal Chemistry. 46: 2580-8. PMID 12801222 DOI: 10.1021/Jm0300835  0.453
2003 Kristjánsdóttir K, Rudolph J. A fluorescence polarization assay for native protein substrates of kinases. Analytical Biochemistry. 316: 41-9. PMID 12694725 DOI: 10.1016/S0003-2697(03)00033-2  0.743
2003 Sohn J, Rudolph J. Facile variation of reagent concentrations in rapid quench enzymology. Analytical Biochemistry. 312: 80-3. PMID 12479839 DOI: 10.1016/S0003-2697(02)00463-3  0.347
2002 Rudolph J. Catalytic mechanism of Cdc25. Biochemistry. 41: 14613-23. PMID 12463761 DOI: 10.1021/Bi0263513  0.543
2001 Wilborn M, Free S, Ban A, Rudolph J. The C-terminal tail of the dual-specificity Cdc25B phosphatase mediates modular substrate recognition Biochemistry. 40: 14200-14206. PMID 11714273 DOI: 10.1021/Bi015638H  0.483
2001 Rudolph J, Epstein DM, Parker L, Eckstein J. Specificity of natural and artificial substrates for human Cdc25A. Analytical Biochemistry. 289: 43-51. PMID 11161293 DOI: 10.1006/Abio.2000.4906  0.389
2000 Chen W, Wilborn M, Rudolph J. Dual-specific Cdc25B phosphatase: in search of the catalytic acid. Biochemistry. 39: 10781-10789. PMID 10978163 DOI: 10.1021/Bi000909U  0.427
1999 Storch KF, Rudolph J, Oesterhelt D. Car: a cytoplasmic sensor responsible for arginine chemotaxis in the archaeon Halobacterium salinarum. The Embo Journal. 18: 1146-58. PMID 10064582 DOI: 10.1093/Emboj/18.5.1146  0.314
1996 Rudolph J, Nordmann B, Storch KF, Gruenberg H, Rodewald K, Oesterhelt D. A family of halobacterial transducer proteins. Fems Microbiology Letters. 139: 161-8. PMID 8674984 DOI: 10.1111/J.1574-6968.1996.Tb08197.X  0.309
1995 Rudolph J, Oesterhelt D. Chemotaxis and phototaxis require a CheA histidine kinase in the archaeon Halobacterium salinarium Embo Journal. 14: 667-673. PMID 7882970 DOI: 10.1002/J.1460-2075.1995.Tb07045.X  0.382
1995 Rudolph J, Tolliday N, Schmitt C, Schuster SC, Oesterhelt D. Phosphorylation in halobacterial signal transduction Embo Journal. 14: 4249-4257. PMID 7556066 DOI: 10.1002/J.1460-2075.1995.Tb00099.X  0.426
1995 Rudolph J, Stubbe J. Investigation of the mechanism of phosphoribosylamine transfer from glutamine phosphoribosylpyrophosphate amidotransferase to glycinamide ribonucleotide synthetase. Biochemistry. 34: 2241-2250. PMID 7532005 DOI: 10.1021/Bi00007A019  0.372
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