| Year |
Citation |
Score |
| 2018 |
Zettl T, Mathew RS, Shi X, Doniach S, Herschlag D, Harbury PAB, Lipfert J. Gold nanocrystal labels provide a sequence-to-3D structure map in SAXS reconstructions. Science Advances. 4: eaar4418. PMID 29806025 DOI: 10.1126/Sciadv.Aar4418 |
0.689 |
|
| 2016 |
Mendez D, Watkins H, Qiao S, Raines KS, Lane TJ, Schenk G, Nelson G, Subramanian G, Tono K, Joti Y, Yabashi M, Ratner D, Doniach S. Angular correlations of photons from solution diffraction at a free-electron laser encode molecular structure. Iucrj. 3: 420-429. PMID 27840681 DOI: 10.1107/S2052252516013956 |
0.356 |
|
| 2016 |
Zettl T, Mathew RS, Seifert S, Harbury PA, Doniach S, Lipfert J. Absolute Intra-Molecular Distance Measurements with Ångström-Resolution using Anomalous Small-Angle X-ray Scattering. Nano Letters. PMID 27244097 DOI: 10.1021/Acs.Nanolett.6B01160 |
0.613 |
|
| 2016 |
Schenk G, Krajina B, Spakowitz A, Doniach S. Potential for measurement of the distribution of DNA folds in complex environments using Correlated X-ray Scattering. Modern Physics Letters. B, Condensed Matter Physics, Statistical Physics, Applied Physics. 30. PMID 27127310 DOI: 10.1142/S0217984916501177 |
0.371 |
|
| 2014 |
Oliver RC, Lipfert J, Fox DA, Lo RH, Kim JJ, Doniach S, Columbus L. Tuning micelle dimensions and properties with binary surfactant mixtures. Langmuir : the Acs Journal of Surfaces and Colloids. 30: 13353-61. PMID 25312254 DOI: 10.1021/La503458N |
0.679 |
|
| 2014 |
Mendez D, Lane TJ, Sung J, Sellberg J, Levard C, Watkins H, Cohen AE, Soltis M, Sutton S, Spudich J, Pande V, Ratner D, Doniach S. Observation of correlated X-ray scattering at atomic resolution. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 369: 20130315. PMID 24914148 DOI: 10.1098/Rstb.2013.0315 |
0.558 |
|
| 2014 |
Lipfert J, Doniach S, Das R, Herschlag D. Understanding nucleic acid-ion interactions. Annual Review of Biochemistry. 83: 813-41. PMID 24606136 DOI: 10.1146/Annurev-Biochem-060409-092720 |
0.761 |
|
| 2014 |
Mendez D, Lane T, Sung J, Ratner D, Watkins H, Doniach S. Correlated scattering: probing atomic structure of molecules and nanoparticles Acta Crystallographica Section a Foundations and Advances. 70: C1582-C1582. DOI: 10.1107/S2053273314084174 |
0.333 |
|
| 2014 |
Watkins HM, Mendez D, Ratner D, Herschlag D, Doniach S. The Effect of Magnesium on the Thermodynamics of Nucleic Acid Tertiary Contact Formation Biophysical Journal. 106: 385a. DOI: 10.1016/J.Bpj.2013.11.2178 |
0.586 |
|
| 2014 |
Lane T, Mendez D, Sung J, Ratner D, Watkins H, Doniach S. Secondary Structure Elucidation via X-Ray Cross Correlation Analysis Biophysical Journal. 106: 384a. DOI: 10.1016/J.Bpj.2013.11.2170 |
0.361 |
|
| 2013 |
Oliver RC, Lipfert J, Fox DA, Lo RH, Doniach S, Columbus L. Dependence of micelle size and shape on detergent alkyl chain length and head group. Plos One. 8: e62488. PMID 23667481 DOI: 10.1371/Journal.Pone.0062488 |
0.699 |
|
| 2012 |
Sim AY, Lipfert J, Herschlag D, Doniach S. Salt dependence of the radius of gyration and flexibility of single-stranded DNA in solution probed by small-angle x-ray scattering. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 86: 021901. PMID 23005779 DOI: 10.1103/Physreve.86.021901 |
0.764 |
|
| 2012 |
Anthony PC, Sim AY, Chu VB, Doniach S, Block SM, Herschlag D. Electrostatics of nucleic acid folding under conformational constraint. Journal of the American Chemical Society. 134: 4607-14. PMID 22369617 DOI: 10.1021/Ja208466H |
0.571 |
|
| 2012 |
Doniach S, Lipfert J. Small and wide angle x-ray scattering from biological macromolecules and their complexes in solution Comprehensive Biophysics. 1: 376-397. DOI: 10.1016/B978-0-12-374920-8.00122-3 |
0.557 |
|
| 2011 |
Poitevin F, Orland H, Doniach S, Koehl P, Delarue M. AquaSAXS: a web server for computation and fitting of SAXS profiles with non-uniformally hydrated atomic models. Nucleic Acids Research. 39: W184-9. PMID 21665925 DOI: 10.1093/Nar/Gkr430 |
0.368 |
|
| 2011 |
Lipfert J, Herschlag D, Doniach S, Dekker NH. RNA Structure, Function, and (Thermo-) Dynamics: A SAXS and Single-Molecule Perspective Biophysical Journal. 100: 1a-2a. DOI: 10.1016/J.Bpj.2010.11.060 |
0.687 |
|
| 2010 |
Jaru-Ampornpan P, Shen K, Lam VQ, Ali M, Doniach S, Jia TZ, Shan SO. ATP-independent reversal of a membrane protein aggregate by a chloroplast SRP subunit. Nature Structural & Molecular Biology. 17: 696-702. PMID 20424608 DOI: 10.1038/Nsmb.1836 |
0.301 |
|
| 2010 |
Lipfert J, Sim AY, Herschlag D, Doniach S. Dissecting electrostatic screening, specific ion binding, and ligand binding in an energetic model for glycine riboswitch folding. Rna (New York, N.Y.). 16: 708-19. PMID 20194520 DOI: 10.1261/Rna.1985110 |
0.692 |
|
| 2010 |
Ali M, Lipfert J, Seifert S, Herschlag D, Doniach S. The ligand-free state of the TPP riboswitch: a partially folded RNA structure. Journal of Molecular Biology. 396: 153-65. PMID 19925806 DOI: 10.1016/J.Jmb.2009.11.030 |
0.76 |
|
| 2010 |
Black-Schaffer AM, Doniach S. Possibility of measuring intrinsic electronic correlations in graphene using a d -wave contact Josephson junction Physical Review B - Condensed Matter and Materials Physics. 81. DOI: 10.1103/Physrevb.81.014517 |
0.602 |
|
| 2009 |
Pollack L, Doniach S. Time-resolved X-ray scattering and RNA folding. Methods in Enzymology. 469: 253-68. PMID 20946793 DOI: 10.1016/S0076-6879(09)69012-1 |
0.403 |
|
| 2009 |
Doniach S, Lipfert J. Use of small angle X-ray scattering (SAXS) to characterize conformational states of functional RNAs. Methods in Enzymology. 469: 237-51. PMID 20946792 DOI: 10.1016/S0076-6879(09)69011-X |
0.738 |
|
| 2009 |
Sivaramakrishnan S, Sung J, Ali M, Doniach S, Flyvbjerg H, Spudich JA. Combining single-molecule optical trapping and small-angle x-ray scattering measurements to compute the persistence length of a protein ER/K alpha-helix. Biophysical Journal. 97: 2993-9. PMID 19948129 DOI: 10.1016/J.Bpj.2009.09.009 |
0.33 |
|
| 2009 |
Chu VB, Lipfert J, Bai Y, Pande VS, Doniach S, Herschlag D. Do conformational biases of simple helical junctions influence RNA folding stability and specificity? Rna (New York, N.Y.). 15: 2195-205. PMID 19850914 DOI: 10.1261/Rna.1747509 |
0.777 |
|
| 2009 |
Columbus L, Lipfert J, Jambunathan K, Fox DA, Sim AY, Doniach S, Lesley SA. Mixing and matching detergents for membrane protein NMR structure determination. Journal of the American Chemical Society. 131: 7320-6. PMID 19425578 DOI: 10.1021/Ja808776J |
0.708 |
|
| 2009 |
Lipfert J, Herschlag D, Doniach S. Riboswitch conformations revealed by small-angle X-ray scattering. Methods in Molecular Biology (Clifton, N.J.). 540: 141-59. PMID 19381558 DOI: 10.1007/978-1-59745-558-9_11 |
0.772 |
|
| 2009 |
Lee TE, Chuang AR, Marek MS, Doniach S, Fairclough RH. Redistribution of terbium ions across acetylcholine receptor-enriched membranes induced by agonist desensitization. Biophysical Journal. 96: 2637-47. PMID 19348747 DOI: 10.1016/J.Bpj.2008.08.006 |
0.302 |
|
| 2009 |
Linder J, Black-Schaffer AM, Yokoyama T, Doniach S, Sudbø A. Josephson current in graphene: Role of unconventional pairing symmetries Physical Review B - Condensed Matter and Materials Physics. 80. DOI: 10.1103/Physrevb.80.094522 |
0.618 |
|
| 2009 |
Black-Schaffer AM, Doniach S. Effect of nearest neighbor spin-singlet correlations in conventional graphene SNS Josephson junctions Physical Review B - Condensed Matter and Materials Physics. 79. DOI: 10.1103/Physrevb.79.064502 |
0.615 |
|
| 2009 |
Sim AYL, Lipfert J, Herschlag D, Doniach S. Scaling Behavior of Single Stranded DNA Measured by Small Angle X-ray Scattering Biophysical Journal. 96. DOI: 10.1016/J.Bpj.2008.12.1744 |
0.678 |
|
| 2008 |
Chu VB, Bai Y, Lipfert J, Herschlag D, Doniach S. A repulsive field: advances in the electrostatics of the ion atmosphere. Current Opinion in Chemical Biology. 12: 619-25. PMID 19081286 DOI: 10.1016/J.Cbpa.2008.10.010 |
0.76 |
|
| 2008 |
Lipfert J, Ouellet J, Norman DG, Doniach S, Lilley DM. The complete VS ribozyme in solution studied by small-angle X-ray scattering. Structure (London, England : 1993). 16: 1357-67. PMID 18786398 DOI: 10.1016/J.Str.2008.07.007 |
0.725 |
|
| 2008 |
Sivaramakrishnan S, Spink BJ, Sim AY, Doniach S, Spudich JA. Dynamic charge interactions create surprising rigidity in the ER/K alpha-helical protein motif. Proceedings of the National Academy of Sciences of the United States of America. 105: 13356-61. PMID 18768817 DOI: 10.1073/Pnas.0806256105 |
0.323 |
|
| 2008 |
Bai Y, Chu VB, Lipfert J, Pande VS, Herschlag D, Doniach S. Critical assessment of nucleic acid electrostatics via experimental and computational investigation of an unfolded state ensemble. Journal of the American Chemical Society. 130: 12334-41. PMID 18722445 DOI: 10.1021/Ja800854U |
0.786 |
|
| 2008 |
Spink BJ, Sivaramakrishnan S, Lipfert J, Doniach S, Spudich JA. Long single alpha-helical tail domains bridge the gap between structure and function of myosin VI. Nature Structural & Molecular Biology. 15: 591-7. PMID 18511944 DOI: 10.1038/Nsmb.1429 |
0.554 |
|
| 2008 |
Black-Schaffer AM, Doniach S. Self-consistent solution for proximity effect and Josephson current in ballistic graphene SNS Josephson junctions Physical Review B - Condensed Matter and Materials Physics. 78. DOI: 10.1103/Physrevb.78.024504 |
0.609 |
|
| 2007 |
Bai Y, Greenfeld M, Travers KJ, Chu VB, Lipfert J, Doniach S, Herschlag D. Quantitative and comprehensive decomposition of the ion atmosphere around nucleic acids. Journal of the American Chemical Society. 129: 14981-8. PMID 17990882 DOI: 10.1021/Ja075020G |
0.699 |
|
| 2007 |
Lipfert J, Columbus L, Chu VB, Lesley SA, Doniach S. Size and shape of detergent micelles determined by small-angle X-ray scattering. The Journal of Physical Chemistry. B. 111: 12427-38. PMID 17924686 DOI: 10.1021/Jp073016L |
0.717 |
|
| 2007 |
Chu VB, Bai Y, Lipfert J, Herschlag D, Doniach S. Evaluation of ion binding to DNA duplexes using a size-modified Poisson-Boltzmann theory. Biophysical Journal. 93: 3202-9. PMID 17604318 DOI: 10.1529/Biophysj.106.099168 |
0.75 |
|
| 2007 |
Franklin J, Koehl P, Doniach S, Delarue M. MinActionPath: maximum likelihood trajectory for large-scale structural transitions in a coarse-grained locally harmonic energy landscape. Nucleic Acids Research. 35: W477-82. PMID 17545201 DOI: 10.1093/Nar/Gkm342 |
0.481 |
|
| 2007 |
Zheng W, Liao JC, Brooks BR, Doniach S. Toward the mechanism of dynamical couplings and translocation in hepatitis C virus NS3 helicase using elastic network model. Proteins. 67: 886-96. PMID 17373706 DOI: 10.1002/Prot.21326 |
0.472 |
|
| 2007 |
Lipfert J, Doniach S. Small-angle X-ray scattering from RNA, proteins, and protein complexes. Annual Review of Biophysics and Biomolecular Structure. 36: 307-27. PMID 17284163 DOI: 10.1146/Annurev.Biophys.36.040306.132655 |
0.735 |
|
| 2007 |
Lipfert J, Das R, Chu VB, Kudaravalli M, Boyd N, Herschlag D, Doniach S. Structural transitions and thermodynamics of a glycine-dependent riboswitch from Vibrio cholerae. Journal of Molecular Biology. 365: 1393-406. PMID 17118400 DOI: 10.1016/J.Jmb.2006.10.022 |
0.792 |
|
| 2007 |
Lipfert J, Columbus L, Chu VB, Doniach S. Analysis of small-angle X-ray scattering data of protein-detergent complexes by singular value decomposition Journal of Applied Crystallography. 40: s235-s239. DOI: 10.1107/S0021889807005791 |
0.708 |
|
| 2007 |
Lipfert J, Chu VB, Bai Y, Herschlag D, Doniach S. Low-resolution models for nucleic acids from small-angle X-ray scattering with applications to electrostatic modeling Journal of Applied Crystallography. 40: s229-s234. DOI: 10.1107/S0021889807001707 |
0.742 |
|
| 2007 |
Black-Schaffer AM, Doniach S. Resonating valence bonds and mean-field d -wave superconductivity in graphite Physical Review B - Condensed Matter and Materials Physics. 75. DOI: 10.1103/Physrevb.75.134512 |
0.61 |
|
| 2006 |
Dantas G, Watters AL, Lunde BM, Eletr ZM, Isern NG, Roseman T, Lipfert J, Doniach S, Tompa M, Kuhlman B, Stoddard BL, Varani G, Baker D. Mis-translation of a computationally designed protein yields an exceptionally stable homodimer: implications for protein engineering and evolution. Journal of Molecular Biology. 362: 1004-24. PMID 16949611 DOI: 10.1016/J.Jmb.2006.07.092 |
0.725 |
|
| 2006 |
Franklin J, Doniach S. Dynamic bond constraints in protein Langevin dynamics. The Journal of Chemical Physics. 124: 154901. PMID 16674259 DOI: 10.1063/1.2178325 |
0.46 |
|
| 2006 |
Columbus L, Lipfert J, Klock H, Millett I, Doniach S, Lesley SA. Expression, purification, and characterization of Thermotoga maritima membrane proteins for structure determination. Protein Science : a Publication of the Protein Society. 15: 961-75. PMID 16597824 DOI: 10.1110/Ps.051874706 |
0.701 |
|
| 2006 |
Lipfert J, Millett IS, Seifert S, Doniach S. Sample holder for small-angle x-ray scattering static and flow cell measurements Review of Scientific Instruments. 77. DOI: 10.1063/1.2194484 |
0.593 |
|
| 2005 |
Franklin J, Doniach S. Adaptive time stepping in biomolecular dynamics. The Journal of Chemical Physics. 123: 124909. PMID 16392529 DOI: 10.1063/1.1997137 |
0.463 |
|
| 2005 |
Zagrovic B, Jayachandran G, Millett IS, Doniach S, Pande VS. How large is an alpha-helix? Studies of the radii of gyration of helical peptides by small-angle X-ray scattering and molecular dynamics. Journal of Molecular Biology. 353: 232-41. PMID 16171817 DOI: 10.1016/J.Jmb.2005.08.053 |
0.357 |
|
| 2005 |
Zagrovic B, Lipfert J, Sorin EJ, Millett IS, van Gunsteren WF, Doniach S, Pande VS. Unusual compactness of a polyproline type II structure. Proceedings of the National Academy of Sciences of the United States of America. 102: 11698-703. PMID 16085707 DOI: 10.1073/Pnas.0409693102 |
0.736 |
|
| 2005 |
Lipfert J, Franklin J, Wu F, Doniach S. Protein misfolding and amyloid formation for the peptide GNNQQNY from yeast prion protein Sup35: simulation by reaction path annealing. Journal of Molecular Biology. 349: 648-58. PMID 15896350 DOI: 10.1016/J.Jmb.2005.03.083 |
0.712 |
|
| 2005 |
Zheng W, Doniach S. Fold recognition aided by constraints from small angle X-ray scattering data. Protein Engineering, Design & Selection : Peds. 18: 209-19. PMID 15845555 DOI: 10.1093/Protein/Gzi026 |
0.543 |
|
| 2005 |
Zheng W, Brooks BR, Doniach S, Thirumalai D. Network of dynamically important residues in the open/closed transition in polymerases is strongly conserved. Structure (London, England : 1993). 13: 565-77. PMID 15837195 DOI: 10.1016/J.Str.2005.01.017 |
0.483 |
|
| 2005 |
Bai Y, Das R, Millett IS, Herschlag D, Doniach S. Probing counterion modulated repulsion and attraction between nucleic acid duplexes in solution. Proceedings of the National Academy of Sciences of the United States of America. 102: 1035-40. PMID 15647360 DOI: 10.1073/Pnas.0404448102 |
0.705 |
|
| 2004 |
Takamoto K, Das R, He Q, Doniach S, Brenowitz M, Herschlag D, Chance MR. Principles of RNA compaction: insights from the equilibrium folding pathway of the P4-P6 RNA domain in monovalent cations. Journal of Molecular Biology. 343: 1195-206. PMID 15491606 DOI: 10.1016/J.Jmb.2004.08.080 |
0.654 |
|
| 2004 |
Kohn JE, Millett IS, Jacob J, Zagrovic B, Dillon TM, Cingel N, Dothager RS, Seifert S, Thiyagarajan P, Sosnick TR, Hasan MZ, Pande VS, Ruczinski I, Doniach S, Plaxco KW. Random-coil behavior and the dimensions of chemically unfolded proteins. Proceedings of the National Academy of Sciences of the United States of America. 101: 12491-6. PMID 15314214 DOI: 10.1073/Pnas.0403643101 |
0.349 |
|
| 2004 |
Schroeter DF, Doniach S. Orbital antiferromagnetism in coupled planar systems Physical Review B - Condensed Matter and Materials Physics. 69: 944071-944077. DOI: 10.1103/Physrevb.69.094407 |
0.764 |
|
| 2003 |
Permyakov SE, Millett IS, Doniach S, Permyakov EA, Uversky VN. Natively unfolded C-terminal domain of caldesmon remains substantially unstructured after the effective binding to calmodulin. Proteins. 53: 855-62. PMID 14635127 DOI: 10.1002/Prot.10481 |
0.315 |
|
| 2003 |
Zheng W, Doniach S. A comparative study of motor-protein motions by using a simple elastic-network model. Proceedings of the National Academy of Sciences of the United States of America. 100: 13253-8. PMID 14585932 DOI: 10.1073/Pnas.2235686100 |
0.497 |
|
| 2003 |
Das R, Kwok LW, Millett IS, Bai Y, Mills TT, Jacob J, Maskel GS, Seifert S, Mochrie SG, Thiyagarajan P, Doniach S, Pollack L, Herschlag D. The fastest global events in RNA folding: electrostatic relaxation and tertiary collapse of the Tetrahymena ribozyme. Journal of Molecular Biology. 332: 311-9. PMID 12948483 DOI: 10.1016/S0022-2836(03)00854-4 |
0.693 |
|
| 2003 |
Das R, Mills TT, Kwok LW, Maskel GS, Millett IS, Doniach S, Finkelstein KD, Herschlag D, Pollack L. Counterion distribution around DNA probed by solution X-ray scattering. Physical Review Letters. 90: 188103. PMID 12786045 DOI: 10.1103/Physrevlett.90.188103 |
0.663 |
|
| 2003 |
Meyer AS, Gillespie JR, Walther D, Millet IS, Doniach S, Frydman J. Closing the folding chamber of the eukaryotic chaperonin requires the transition state of ATP hydrolysis. Cell. 113: 369-81. PMID 12732144 DOI: 10.1016/S0092-8674(03)00307-6 |
0.325 |
|
| 2002 |
Millett IS, Doniach S, Plaxco KW. Toward a taxonomy of the denatured state: small angle scattering studies of unfolded proteins. Advances in Protein Chemistry. 62: 241-62. PMID 12418105 DOI: 10.1016/S0065-3233(02)62009-1 |
0.364 |
|
| 2002 |
Russell R, Millett IS, Tate MW, Kwok LW, Nakatani B, Gruner SM, Mochrie SG, Pande V, Doniach S, Herschlag D, Pollack L. Rapid compaction during RNA folding. Proceedings of the National Academy of Sciences of the United States of America. 99: 4266-71. PMID 11929997 DOI: 10.1073/Pnas.072589599 |
0.578 |
|
| 2002 |
Zheng W, Doniach S. Protein structure prediction constrained by solution X-ray scattering data and structural homology identification. Journal of Molecular Biology. 316: 173-87. PMID 11829511 DOI: 10.1006/Jmbi.2001.5324 |
0.542 |
|
| 2002 |
Choy WY, Mulder FA, Crowhurst KA, Muhandiram DR, Millett IS, Doniach S, Forman-Kay JD, Kay LE. Distribution of molecular size within an unfolded state ensemble using small-angle X-ray scattering and pulse field gradient NMR techniques. Journal of Molecular Biology. 316: 101-12. PMID 11829506 DOI: 10.1006/Jmbi.2001.5328 |
0.379 |
|
| 2002 |
Souillac PO, Uversky VN, Millett IS, Khurana R, Doniach S, Fink AL. Effect of association state and conformational stability on the kinetics of immunoglobulin light chain amyloid fibril formation at physiological pH. The Journal of Biological Chemistry. 277: 12657-65. PMID 11815605 DOI: 10.1074/Jbc.M109230200 |
0.306 |
|
| 2002 |
Souillac PO, Uversky VN, Millett IS, Khurana R, Doniach S, Fink AL. Elucidation of the molecular mechanism during the early events in immunoglobulin light chain amyloid fibrillation. Evidence for an off-pathway oligomer at acidic pH. The Journal of Biological Chemistry. 277: 12666-79. PMID 11815604 DOI: 10.1074/Jbc.M109229200 |
0.319 |
|
| 2002 |
Millet IS, Townsley LE, Chiti F, Doniach S, Plaxco KW. Equilibrium collapse and the kinetic 'foldability' of proteins. Biochemistry. 41: 321-5. PMID 11772031 DOI: 10.1021/Bi015695A |
0.383 |
|
| 2002 |
Russell R, Zhuang X, Babcock HP, Millett IS, Doniach S, Chu S, Herschlag D. Exploring the folding landscape of a structured RNA. Proceedings of the National Academy of Sciences of the United States of America. 99: 155-60. PMID 11756689 DOI: 10.1073/Pnas.221593598 |
0.58 |
|
| 2002 |
Schroeter DF, Doniach S. Three-dimensional flux states as a model for the pseudogap phase of transition metal oxides Physical Review B - Condensed Matter and Materials Physics. 66: 751201-751209. DOI: 10.1103/Physrevb.66.075120 |
0.77 |
|
| 2001 |
Doniach S. Changes in biomolecular conformation seen by small angle X-ray scattering. Chemical Reviews. 101: 1763-78. PMID 11709998 DOI: 10.1021/Cr990071K |
0.365 |
|
| 2001 |
Eastman P, Grønbech-Jensen N, Doniach S. Simulation of protein folding by reaction path annealing Journal of Chemical Physics. 114: 3823-3841. DOI: 10.1063/1.1342162 |
0.65 |
|
| 2000 |
Doniach S. Fourth-generation X-ray sources: some possible applications to biology. Journal of Synchrotron Radiation. 7: 116-20. PMID 16609184 DOI: 10.1107/S0909049500004143 |
0.316 |
|
| 2000 |
Bada M, Walther D, Arcangioli B, Doniach S, Delarue M. Solution structural studies and low-resolution model of the Schizosaccharomyces pombe sap1 protein. Journal of Molecular Biology. 300: 563-74. PMID 10884352 DOI: 10.1006/Jmbi.2000.3854 |
0.398 |
|
| 2000 |
Russell R, Millett IS, Doniach S, Herschlag D. Small angle X-ray scattering reveals a compact intermediate in RNA folding. Nature Structural Biology. 7: 367-70. PMID 10802731 DOI: 10.1038/75132 |
0.599 |
|
| 2000 |
Uversky VN, Gillespie JR, Millett IS, Khodyakova AV, Vasilenko RN, Vasiliev AM, Rodionov IL, Kozlovskaya GD, Dolgikh DA, Fink AL, Doniach S, Permyakov EA, Abramov VM. Zn(2+)-mediated structure formation and compaction of the "natively unfolded" human prothymosin alpha. Biochemical and Biophysical Research Communications. 267: 663-8. PMID 10631119 DOI: 10.1006/Bbrc.1999.2013 |
0.342 |
|
| 2000 |
Walther D, Cohen FE, Doniach S. Reconstruction of low-resolution three-dimensional density maps from one-dimensional small-angle X-ray solution scattering data for biomolecules Journal of Applied Crystallography. 33: 350-363. DOI: 10.1107/S0021889899015976 |
0.391 |
|
| 1999 |
Segel DJ, Eliezer D, Uversky V, Fink AL, Hodgson KO, Doniach S. Transient dimer in the refolding kinetics of cytochrome c characterized by small-angle X-ray scattering. Biochemistry. 38: 15352-9. PMID 10563821 DOI: 10.1021/Bi991337K |
0.578 |
|
| 1999 |
Uversky VN, Gillespie JR, Millett IS, Khodyakova AV, Vasiliev AM, Chernovskaya TV, Vasilenko RN, Kozlovskaya GD, Dolgikh DA, Fink AL, Doniach S, Abramov VM. Natively unfolded human prothymosin alpha adopts partially folded collapsed conformation at acidic pH. Biochemistry. 38: 15009-16. PMID 10555983 DOI: 10.1021/Bi990752+ |
0.303 |
|
| 1999 |
Plaxco KW, Millett IS, Segel DJ, Doniach S, Baker D. Chain collapse can occur concomitantly with the rate-limiting step in protein folding. Nature Structural Biology. 6: 554-6. PMID 10360359 DOI: 10.1038/9329 |
0.455 |
|
| 1999 |
Segel DJ, Bachmann A, Hofrichter J, Hodgson KO, Doniach S, Kiefhaber T. Characterization of transient intermediates in lysozyme folding with time-resolved small-angle X-ray scattering. Journal of Molecular Biology. 288: 489-99. PMID 10329156 DOI: 10.1006/Jmbi.1999.2703 |
0.38 |
|
| 1999 |
Doniach S, Eastman P. Protein dynamics simulations from nanoseconds to microseconds. Current Opinion in Structural Biology. 9: 157-63. PMID 10322213 DOI: 10.1016/S0959-440X(99)80022-0 |
0.657 |
|
| 1999 |
Uversky VN, Karnoup AS, Khurana R, Segel DJ, Doniach S, Fink AL. Association of partially-folded intermediates of staphylococcal nuclease induces structure and stability. Protein Science : a Publication of the Protein Society. 8: 161-73. PMID 10210194 DOI: 10.1110/Ps.8.1.161 |
0.379 |
|
| 1999 |
Eastman P, Pellegrini M, Doniach S. Protein flexibility in solution and in crystals Journal of Chemical Physics. 110: 10141-10152. DOI: 10.1063/1.478887 |
0.661 |
|
| 1998 |
Segel DJ, Fink AL, Hodgson KO, Doniach S. Protein denaturation: a small-angle X-ray scattering study of the ensemble of unfolded states of cytochrome c. Biochemistry. 37: 12443-51. PMID 9730816 DOI: 10.1021/Bi980535T |
0.385 |
|
| 1998 |
Uversky VN, Karnoup AS, Segel DJ, Seshadri S, Doniach S, Fink AL. Anion-induced folding of Staphylococcal nuclease: characterization of multiple equilibrium partially folded intermediates. Journal of Molecular Biology. 278: 879-94. PMID 9614949 DOI: 10.1006/Jmbi.1998.1741 |
0.379 |
|
| 1998 |
Uversky VN, Segel DJ, Doniach S, Fink AL. Association-induced folding of globular proteins. Proceedings of the National Academy of Sciences of the United States of America. 95: 5480-3. PMID 9576907 DOI: 10.1073/Pnas.95.10.5480 |
0.386 |
|
| 1998 |
Eastman P, Doniach S. Multiple time step diffusive Langevin dynamics for proteins. Proteins. 30: 215-27. PMID 9517537 DOI: 10.1002/(Sici)1097-0134(19980215)30:3<215::Aid-Prot1>3.0.Co;2-J |
0.642 |
|
| 1998 |
Chen L, Wildegger G, Kiefhaber T, Hodgson KO, Doniach S. Kinetics of lysozyme refolding: structural characterization of a non-specifically collapsed state using time-resolved X-ray scattering. Journal of Molecular Biology. 276: 225-37. PMID 9514723 DOI: 10.1006/Jmbi.1997.1514 |
0.397 |
|
| 1998 |
Watanabe H, Doniach S. Metal-insulator transition of the two-band Hubbard model in infinite dimension and its relevance to a strongly correlated electron system: NiS2-xSex Physical Review B - Condensed Matter and Materials Physics. 57: 3829-3837. DOI: 10.1103/Physrevb.57.3829 |
0.304 |
|
| 1997 |
Pellegrini M, Grønbech-Jensen N, Doniach S. Simulations of the thermodynamic properties of a short polyalanine peptide using potentials of mean force Physica a: Statistical Mechanics and Its Applications. 239: 244-254. DOI: 10.1016/S0378-4371(96)00483-9 |
0.329 |
|
| 1996 |
Chen L, Hodgson KO, Doniach S. A lysozyme folding intermediate revealed by solution X-ray scattering. Journal of Molecular Biology. 261: 658-71. PMID 8800214 DOI: 10.1006/Jmbi.1996.0491 |
0.409 |
|
| 1996 |
Doniach S, Garel T, Orland H. Phase diagram of a semiflexible polymer chain in a θ solvent: Application to protein folding Journal of Chemical Physics. 105: 1601-1608. DOI: 10.1063/1.472031 |
0.332 |
|
| 1995 |
Eliezer D, Jennings PA, Wright PE, Doniach S, Hodgson KO, Tsuruta H. The radius of gyration of an apomyoglobin folding intermediate. Science (New York, N.Y.). 270: 487-8. PMID 7570004 DOI: 10.1126/Science.270.5235.487 |
0.651 |
|
| 1995 |
Doniach S, Bascle J, Garel T, Orland H. Partially folded states of proteins: characterization by X-ray scattering. Journal of Molecular Biology. 254: 960-7. PMID 7500363 DOI: 10.1006/Jmbi.1995.0668 |
0.401 |
|
| 1995 |
Pellegrini M, Doniach S. Modeling solvation contributions to conformational free energy changes of biomolecules using a potential of mean force expansion The Journal of Chemical Physics. 103: 2696-2702. DOI: 10.1063/1.470503 |
0.313 |
|
| 1994 |
Fu C, Krijn MP, Doniach S. Electronic structure and optical properties of FeSi, a strongly correlated insulator. Physical Review. B, Condensed Matter. 49: 2219-2222. PMID 10011042 DOI: 10.1103/Physrevb.49.2219 |
0.314 |
|
| 1994 |
Wakatsuki S, Kimura Y, Stoeckenius W, Gillis N, Eliezer D, Hodgson KO, Doniach S. Blue form of bacteriorhodopsin and its order-disorder transition during dehydration. Biochimica Et Biophysica Acta. 1185: 160-6. PMID 8167134 DOI: 10.1016/0005-2728(94)90206-2 |
0.529 |
|
| 1994 |
Chen L, Gavini N, Tsuruta H, Eliezer D, Burgess BK, Doniach S, Hodgson KO. MgATP-induced conformational changes in the iron protein from Azotobacter vinelandii, as studied by small-angle x-ray scattering. The Journal of Biological Chemistry. 269: 3290-4. PMID 8106367 |
0.494 |
|
| 1993 |
Eliezer D, Frank P, Gillis N, Newton WE, Doniach S, Hodgson KO. Small-angle x-ray scattering studies of the iron-molybdenum cofactor from Azotobacter vinelandii nitrogenase. The Journal of Biological Chemistry. 268: 20953-7. PMID 8407930 |
0.497 |
|
| 1993 |
Eliezer D, Chiba K, Tsuruta H, Doniach S, Hodgson KO, Kihara H. Evidence of an associative intermediate on the myoglobin refolding pathway. Biophysical Journal. 65: 912-7. PMID 8218914 DOI: 10.1016/S0006-3495(93)81124-X |
0.578 |
|
| 1992 |
Wakatsuki S, Hodgson KO, Eliezer D, Rice M, Hubbard S, Gillis N, Doniach S, Spann U. Small-angle x-ray scattering/diffraction system for studies of biological and other materials at the Stanford Synchrotron Radiation Laboratory a) Review of Scientific Instruments. 63: 1736-1740. DOI: 10.1063/1.1143201 |
0.538 |
|
| 1992 |
Wakatsuki S, Hodgson KO, Eliezer D, Rice M, Hubbard S, Gillis N, Doniach S, Spann U. Small‐angle x‐ray scattering/diffraction system for studies of biological and other materials at the Stanford Synchrotron Radiation Laboratory (abstract)a) Review of Scientific Instruments. 63: 1068-1068. DOI: 10.1063/1.1143201 |
0.438 |
|
| 1990 |
Doniach S, Inui M. Long-range Coulomb interactions and the onset of superconductivity in the high-Tc materials. Physical Review. B, Condensed Matter. 41: 6668-6678. PMID 9992916 DOI: 10.1103/Physrevb.41.6668 |
0.301 |
|
| 1989 |
Wilson C, Doniach S. A computer model to dynamically simulate protein folding: studies with crambin. Proteins. 6: 193-209. PMID 2622905 DOI: 10.1002/Prot.340060208 |
0.361 |
|
| 1988 |
Bradley RM, Kung D, Strenski PN, Doniach S. Finite-voltage behavior of highly-disordered granular superconductors Physica B: Physics of Condensed Matter. 152: 282-287. DOI: 10.1016/0921-4526(88)90101-9 |
0.496 |
|
| 1987 |
Bradley RM, Kung D, Doniach S, Strenski PN. Non-linear conductivity of granular superconductors: A novel breakdown problem Journal of Physics a: Mathematical and General. 20: L911-L916. DOI: 10.1088/0305-4470/20/14/003 |
0.415 |
|
| 1986 |
Fairclough RH, Miake-Lye RC, Stroud RM, Hodgson KO, Doniach S. Location of terbium binding sites on acetylcholine receptor-enriched membranes. Journal of Molecular Biology. 189: 673-80. PMID 3783687 DOI: 10.1016/0022-2836(86)90497-3 |
0.325 |
|
| 1986 |
PENNER-HAHN JE, SMITH TA, HEDMAN B, HODGSON KO, DONIACH S. POLARIZED X-RAY ABSORPTION NEAR EDGE STRUCTURE Le Journal De Physique Colloques. 47: C8-1197-C8-1200. DOI: 10.1051/Jphyscol:19868235 |
0.326 |
|
| 1986 |
Penner-Hahn JE, Benfatto M, Hedman B, Takahashi T, Doniach S, Groves JT, Hodgson KO. Polarized x-ray absorption near-edge structure of highly oxidized chromium porphyrins Inorganic Chemistry. 25: 2255-2259. DOI: 10.1021/Ic00233A032 |
0.31 |
|
| 1984 |
Bradley RM, Doniach S. Quantum fluctuations in chains of Josephson junctions Physical Review B. 30: 1138-1147. DOI: 10.1103/PhysRevB.30.1138 |
0.424 |
|
| 1983 |
Miake-Lye RC, Doniach S, Hodgson KO. Anomalous x-ray scattering from terbium-labeled parvalbumin in solution. Biophysical Journal. 41: 287-92. PMID 6838970 DOI: 10.1016/S0006-3495(83)84440-3 |
0.387 |
|
| 1982 |
Hahn JE, Scott RA, Hodgson KO, Doniach S, Desjardins SR, Solomon EI. Observation of an electric quadrupole transition in the X-ray absorption spectrum of a Cu(II) complex Chemical Physics Letters. 88: 595-598. DOI: 10.1016/0009-2614(82)85016-1 |
0.316 |
|
| 1982 |
Kutzler FW, Hodgson KO, Misemer DK, Doniach S. Theory of white lines in the x-ray absorption spectra of lanthanide complexes Chemical Physics Letters. 92: 626-630. DOI: 10.1016/0009-2614(82)83662-2 |
0.317 |
|
| 1982 |
Turkevich LA, Doniach S. Critical behavior of the one-dimensional commensurate-incommensurate transition Annals of Physics. 139: 343-418. DOI: 10.1016/0003-4916(82)90204-4 |
0.616 |
|
| 1980 |
Natoli CR, Misemer DK, Doniach S, Kutzler FW. First-principles calculation of x-ray absorption-edge structure in molecular clusters Physical Review A. 22: 1104-1108. DOI: 10.1103/Physreva.22.1104 |
0.308 |
|
| 1980 |
Kutzler FW, Natoli CR, Misemer DK, Doniach S, Hodgson KO. Use of one‐electron theory for the interpretation of near edge structure inK‐shell x‐ray absorption spectra of transition metal complexes The Journal of Chemical Physics. 73: 3274-3288. DOI: 10.1063/1.440523 |
0.313 |
|
| 1978 |
Bianconi A, Doniach S, Lublin D. X-ray Ca K edge of calcium adenosine triphosphate system and of simple Ca compunds Chemical Physics Letters. 59: 121-124. DOI: 10.1016/0009-2614(78)85629-2 |
0.442 |
|
| 1976 |
Cramer SP, Eccles TK, Kutzler F, Hodgson KO, Doniach S. Applications of X-ray photoabsorption spectroscopy to the determination of local structure in organometallic compounds. Journal of the American Chemical Society. 98: 8059-69. PMID 993517 DOI: 10.1002/Chin.197710043 |
0.31 |
|
| 1975 |
Kincaid BM, Eisenberger P, Hodgson KO, Doniach S. X-ray absorption spectroscopy using synchrotron radiation for structural investigation of organometallic molecules of biological interest. Proceedings of the National Academy of Sciences of the United States of America. 72: 2340-2. PMID 1056033 DOI: 10.1073/Pnas.72.6.2340 |
0.72 |
|
| 1975 |
Ashley CA, Doniach S. Theory of extended x-ray absorption edge fine structure (EXAFS) in crystalline solids Physical Review B. 11: 1279-1288. DOI: 10.1103/Physrevb.11.1279 |
0.33 |
|
| 1970 |
Doniach S, Sunjic M. Many-electron singularity in X-ray photoemission and X-ray line spectra from metals Journal of Physics C: Solid State Physics. 3: 285-291. DOI: 10.1088/0022-3719/3/2/010 |
0.306 |
|
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