Philippe Dumas - Publications

Affiliations: 
Université Louis Pasteur (Strasbourg) 

70 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Muñoz E, Sabín J, Rial J, Pérez D, Ennifar E, Dumas P, Piñeiro Á. Thermodynamic and Kinetic Analysis of Isothermal Titration Calorimetry Experiments by Using KinITC in AFFINImeter. Methods in Molecular Biology (Clifton, N.J.). 1964: 225-239. PMID 30929246 DOI: 10.1007/978-1-4939-9179-2_16  0.617
2019 Meyer B, da Veiga C, Dumas P, Ennifar E. Thermodynamics of Molecular Machines Using Incremental ITC. Methods in Molecular Biology (Clifton, N.J.). 1964: 129-140. PMID 30929240 DOI: 10.1007/978-1-4939-9179-2_10  0.649
2019 André C, Martiel I, Wolff P, Landolfo M, Lorber B, Silva da Veiga C, Dejaegere A, Dumas P, Guichard G, Olieric V, Wagner JG, Burnouf DY. Peptide Interactions on Bacterial Sliding Clamps. Acs Infectious Diseases. PMID 30912430 DOI: 10.1021/acsinfecdis.9b00089  0.316
2019 Piñeiro Á, Muñoz E, Sabín J, Costas M, Bastos M, Velázquez-Campoy A, Garrido PF, Dumas P, Ennifar E, García-Río L, Rial J, Pérez D, Fraga P, Rodríguez A, Cotelo C. AFFINImeter: A software to analyze molecular recognition processes from experimental data. Analytical Biochemistry. PMID 30849378 DOI: 10.1016/J.Ab.2019.02.031  0.606
2017 Wolff P, Da Veiga C, Ennifar E, Bec G, Guichard G, Burnouf D, Dumas P. Native ESI Mass Spectrometry Can Help to Avoid Wrong Interpretations from Isothermal Titration Calorimetry in Difficult Situations. Journal of the American Society For Mass Spectrometry. 28: 347-357. PMID 27957716 DOI: 10.1007/S13361-016-1534-6  0.619
2016 Challier L, Miranda-Castro R, Barbe B, Fave C, Limoges B, Peyrin E, Ravelet C, Fiore E, Labbé P, Coche-Guérente L, Ennifar E, Bec G, Dumas P, Mavré F, Noël V. Multianalytical Study of the Binding between a Small Chiral Molecule and a DNA Aptamer: Evidence for Asymmetric Steric Effect upon 3'- versus 5'-End Sequence Modification. Analytical Chemistry. 88: 11963-11971. PMID 27934108 DOI: 10.1021/Acs.Analchem.6B04046  0.666
2016 Guedich S, Puffer-Enders B, Baltzinger M, Hoffmann G, Da Veiga C, Jossinet F, Thore S, Bec G, Ennifar E, Burnouf D, Dumas P. Quantitative and predictive model of kinetic regulation by E. coli TPP riboswitches. Rna Biology. 13: 373-90. PMID 26932506 DOI: 10.1080/15476286.2016.1142040  0.649
2016 Dumas P, Ennifar E, Da Veiga C, Bec G, Palau W, Di Primo C, Piñeiro A, Sabin J, Muñoz E, Rial J. Extending ITC to Kinetics with kinITC. Methods in Enzymology. 567: 157-80. PMID 26794354 DOI: 10.1016/Bs.Mie.2015.08.026  0.605
2016 Da Veiga C, Mezher J, Dumas P, Ennifar E. Isothermal Titration Calorimetry: Assisted Crystallization of RNA-Ligand Complexes. Methods in Molecular Biology (Clifton, N.J.). 1320: 127-43. PMID 26227041 DOI: 10.1007/978-1-4939-2763-0_9  0.691
2013 Ennifar E, Aslam MW, Strasser P, Hoffmann G, Dumas P, Van Delft FL. Structure-guided discovery of a novel aminoglycoside conjugate targeting HIV-1 RNA viral genome Acs Chemical Biology. 8: 2509-2517. PMID 24015986 DOI: 10.1021/Cb400498N  0.713
2013 Bec G, Meyer B, Gerard MA, Steger J, Fauster K, Wolff P, Burnouf D, Micura R, Dumas P, Ennifar E. Thermodynamics of HIV-1 reverse transcriptase in action elucidates the mechanism of action of non-nucleoside inhibitors. Journal of the American Chemical Society. 135: 9743-52. PMID 23742167 DOI: 10.1021/Ja4018418  0.675
2012 Freisz S, Mezher J, Hafirassou L, Wolff P, Nominé Y, Romier C, Dumas P, Ennifar E. Sequence and structure requirements for specific recognition of HIV-1 TAR and DIS RNA by the HIV-1 Vif protein. Rna Biology. 9: 966-77. PMID 22767258 DOI: 10.4161/Rna.20483  0.712
2012 Burnouf D, Ennifar E, Guedich S, Puffer B, Hoffmann G, Bec G, Disdier F, Baltzinger M, Dumas P. kinITC: a new method for obtaining joint thermodynamic and kinetic data by isothermal titration calorimetry. Journal of the American Chemical Society. 134: 559-65. PMID 22126339 DOI: 10.1021/Ja209057D  0.678
2011 Wolff P, Oliéric V, Briand JP, Chaloin O, Dejaegere A, Dumas P, Ennifar E, Guichard G, Wagner J, Burnouf DY. Structure-based design of short peptide ligands binding onto the E. coli processivity ring. Journal of Medicinal Chemistry. 54: 4627-37. PMID 21619076 DOI: 10.1021/Jm200311M  0.634
2010 Ennifar E, Walter P, Dumas P. Cation-dependent cleavage of the duplex form of the subtype-B HIV-1 RNA dimerization initiation site. Nucleic Acids Research. 38: 5807-16. PMID 20460458 DOI: 10.1093/Nar/Gkq344  0.776
2010 Freisz S, Bec G, Radi M, Wolff P, Crespan E, Angeli L, Dumas P, Maga G, Botta M, Ennifar E. Crystal structure of HIV-1 reverse transcriptase bound to a non-nucleoside inhibitor with a novel mechanism of action. Angewandte Chemie (International Ed. in English). 49: 1805-8. PMID 20135654 DOI: 10.1002/Anie.200905651  0.655
2009 Oliéric V, Wolff P, Takeuchi A, Bec G, Birck C, Vitorino M, Kieffer B, Beniaminov A, Cavigiolio G, Theil E, Allmang C, Krol A, Dumas P. SECIS-binding protein 2, a key player in selenoprotein synthesis, is an intrinsically disordered protein. Biochimie. 91: 1003-9. PMID 19467292 DOI: 10.1016/J.Biochi.2009.05.004  0.39
2009 Olieric V, Rieder U, Lang K, Serganov A, Schulze-Briese C, Micura R, Dumas P, Ennifar E. A fast selenium derivatization strategy for crystallization and phasing of RNA structures. Rna (New York, N.Y.). 15: 707-15. PMID 19228585 DOI: 10.1261/Rna.1499309  0.685
2009 Radi M, Maga G, Alongi M, Angeli L, Samuele A, Zanoli S, Bellucci L, Tafi A, Casaluce G, Giorgi G, Armand-Ugon M, Gonzalez E, Esté JA, Baltzinger M, Bec G, ... Dumas P, et al. Discovery of chiral cyclopropyl dihydro-alkylthio-benzyl-oxopyrimidine (S-DABO) derivatives as potent HIV-1 reverse transcriptase inhibitors with high activity against clinically relevant mutants. Journal of Medicinal Chemistry. 52: 840-51. PMID 19140683 DOI: 10.1021/Jm801330N  0.618
2008 Freisz S, Lang K, Micura R, Dumas P, Ennifar E. Binding of aminoglycoside antibiotics to the duplex form of the HIV-1 genomic RNA dimerization initiation site. Angewandte Chemie (International Ed. in English). 47: 4110-3. PMID 18435520 DOI: 10.1002/Anie.200800726  0.701
2007 Bernacchi S, Freisz S, Maechling C, Spiess B, Marquet R, Dumas P, Ennifar E. Aminoglycoside binding to the HIV-1 RNA dimerization initiation site: thermodynamics and effect on the kissing-loop to duplex conversion. Nucleic Acids Research. 35: 7128-39. PMID 17942426 DOI: 10.1093/Nar/Gkm856  0.729
2007 Bodlenner A, Alix A, Weibel JM, Pale P, Ennifar E, Paillart JC, Walter P, Marquet R, Dumas P. Synthesis of a neamine dimer targeting the dimerization initiation site of HIV-1 RNA. Organic Letters. 9: 4415-8. PMID 17915882 DOI: 10.1021/Ol701760K  0.767
2007 Ennifar E, Bernacchi S, Wolff P, Dumas P. Influence of C-5 halogenation of uridines on hairpin versus duplex RNA folding. Rna (New York, N.Y.). 13: 1445-52. PMID 17630326 DOI: 10.1261/Rna.408507  0.703
2007 Bernacchi S, Henriet S, Dumas P, Paillart JC, Marquet R. RNA and DNA binding properties of HIV-1 Vif protein: a fluorescence study. The Journal of Biological Chemistry. 282: 26361-8. PMID 17609216 DOI: 10.1074/Jbc.M703122200  0.469
2007 Oliéric V, Ennifar E, Meents A, Fleurant M, Besnard C, Pattison P, Schiltz M, Schulze-Briese C, Dumas P. Using X-ray absorption spectra to monitor specific radiation damage to anomalously scattering atoms in macromolecular crystallography. Acta Crystallographica Section D-Biological Crystallography. 63: 759-768. PMID 17582167 DOI: 10.1107/S0907444907019580  0.612
2007 Ennifar E, Paillart JC, Bernacchi S, Walter P, Pale P, Decout JL, Marquet R, Dumas P. A structure-based approach for targeting the HIV-1 genomic RNA dimerization initiation site. Biochimie. 89: 1195-203. PMID 17434658 DOI: 10.1016/J.Biochi.2007.03.003  0.783
2006 Ennifar E, Paillart JC, Bodlenner A, Walter P, Weibel JM, Aubertin AM, Pale P, Dumas P, Marquet R. Targeting the dimerization initiation site of HIV-1 RNA with aminoglycosides: from crystal to cell. Nucleic Acids Research. 34: 2328-39. PMID 16679451 DOI: 10.1093/Nar/Gkl317  0.786
2006 Ennifar E, Dumas P. Polymorphism of bulged-out residues in HIV-1 RNA DIS kissing complex and structure comparison with solution studies. Journal of Molecular Biology. 356: 771-82. PMID 16403527 DOI: 10.1016/J.Jmb.2005.12.022  0.731
2006 Christensen CE, Kragelund B, Wettstein-Knowles Pv, Henriksen A, Ennifar E, Paillart J, Marquet R, Dumas P. The Structure of the Human Mitochondrial β-ketoacyl-ACP synthase Acta Crystallographica Section A. 62: 26-26. DOI: 10.1107/S010876730609948X  0.57
2006 Ennifar E, Paillart J-, Marquet R, Dumas P. Aminoglycoside binding to HIV-1 DIS kissing-loop complex: from crystals to cells Acta Crystallographica Section A. 62. DOI: 10.1107/S0108767306099478  0.671
2006 Fleurant M, Camus F, Besnard C, Ennifar E, Dumas P, Pattison P, Schiltz M. Radiation-induced debromination monitored by polarized X-ray absorption spectroscopy Acta Crystallographica Section A. 62: 205-205. DOI: 10.1107/S0108767306095912  0.567
2006 Cotte M, Checroun E, Susini J, Dumas P, Tchoreloff P, Besnard M, Walter P. Kinetics of oil saponification by lead salts in ancient preparations of pharmaceutical lead plasters and painting lead mediums Talanta. 70: 1136-1142. DOI: 10.1016/J.Talanta.2006.03.007  0.511
2005 Bernacchi S, Ennifar E, Tóth K, Walter P, Langowski J, Dumas P. Mechanism of hairpin-duplex conversion for the HIV-1 dimerization initiation site. The Journal of Biological Chemistry. 280: 40112-21. PMID 16169845 DOI: 10.1074/Jbc.M503230200  0.786
2004 Ehresmann C, Ehresmann B, Ennifar E, Dumas P, Garber M, Mathy N, Nikulin A, Portier C, Patel D, Serganov A. Molecular mimicry in translational regulation: the case of ribosomal protein S15. Rna Biology. 1: 66-73. PMID 17194931  0.604
2004 Schiltz M, Dumas P, Ennifar E, Flensburg C, Paciorek W, Vonrhein C, Bricogne G. Phasing in the presence of severe site-specific radiation damage through dose-dependent modelling of heavy atoms. Acta Crystallographica. Section D, Biological Crystallography. 60: 1024-31. PMID 15159561 DOI: 10.1107/S0907444904006377  0.605
2004 Burnouf DY, Olieric V, Wagner J, Fujii S, Reinbolt J, Fuchs RP, Dumas P. Structural and biochemical analysis of sliding clamp/ligand interactions suggest a competition between replicative and translesion DNA polymerases. Journal of Molecular Biology. 335: 1187-97. PMID 14729336 DOI: 10.1016/J.Jmb.2003.11.049  0.336
2004 Ehresmann C, Ehresmann B, Ennifar E, Dumas P, Garber M, Mathy N, Nikulin A, Portier C, Patel D, Serganov A. Molecular mimicry in translational regulation: the case of ribosomal protein S15 Rna Biology. 1: 66-73. DOI: 10.4161/Rna.1.1.958  0.636
2003 Ennifar E, Walter P, Dumas P. A crystallographic study of the binding of 13 metal ions to two related RNA duplexes. Nucleic Acids Research. 31: 2671-82. PMID 12736317 DOI: 10.1093/Nar/Gkg350  0.759
2003 Ennifar E, Paillart JC, Marquet R, Ehresmann B, Ehresmann C, Dumas P, Walter P. HIV-1 RNA dimerization initiation site is structurally similar to the ribosomal A site and binds aminoglycoside antibiotics. The Journal of Biological Chemistry. 278: 2723-30. PMID 12435744 DOI: 10.1074/Jbc.M205726200  0.785
2002 Perederina A, Nevskaya N, Nikonov O, Nikulin A, Dumas P, Yao M, Tanaka I, Garber M, Gongadze G, Nikonov S. Detailed analysis of RNA-protein interactions within the bacterial ribosomal protein L5/5S rRNA complex. Rna (New York, N.Y.). 8: 1548-57. PMID 12515387 DOI: 10.1017/S1355838202029953  0.413
2002 Ennifar E, Carpentier P, Ferrer JL, Walter P, Dumas P. X-ray-induced debromination of nucleic acids at the Br K absorption edge and implications for MAD phasing. Acta Crystallographica. Section D, Biological Crystallography. 58: 1262-8. PMID 12136136 DOI: 10.1107/S0907444902009526  0.712
2001 Ennifar E, Walter P, Ehresmann B, Ehresmann C, Dumas P. Crystal structures of coaxially stacked kissing complexes of the HIV-1 RNA dimerization initiation site. Nature Structural & Molecular Biology. 8: 1064-1068. PMID 11702070 DOI: 10.1038/Nsb727  0.777
2001 Tishchenko S, Nikulin A, Fomenkova N, Nevskaya N, Nikonov O, Dumas P, Moine H, Ehresmann B, Ehresmann C, Piendl W, Lamzin V, Garber M, Nikonov S. Detailed analysis of RNA-protein interactions within the ribosomal protein S8-rRNA complex from the archaeon Methanococcus jannaschii. Journal of Molecular Biology. 311: 311-324. PMID 11478863 DOI: 10.1006/Jmbi.2001.4877  0.413
2001 Ennifar E, Walter P, Dumas P. An efficient method for solving RNA structures: MAD phasing by replacing magnesium with zinc Acta Crystallographica Section D-Biological Crystallography. 57: 330-332. PMID 11173496 DOI: 10.1107/S0907444900017558  0.762
2000 Bénas P, Bec G, Keith G, Marquet R, Ehresmann C, Ehresmann B, Dumas P. The crystal structure of HIV reverse-transcription primer tRNA(Lys,3) shows a canonical anticodon loop. Rna (New York, N.Y.). 6: 1347-55. PMID 11073212 DOI: 10.1017/S1355838200000911  0.472
2000 Ennifar E, Nikulin A, Tishchenko S, Serganov A, Nevskaya N, Garber M, Ehresmann B, Ehresmann C, Nikonov S, Dumas P. The crystal structure of UUCG tetraloop. Journal of Molecular Biology. 304: 35-42. PMID 11071808 DOI: 10.1006/Jmbi.2000.4204  0.685
2000 Nikulin A, Serganov A, Ennifar E, Tishchenko S, Nevskaya N, Shepard W, Portier C, Garber M, Ehresmann B, Ehresmann C, Nikonov S, Dumas P. Crystal structure of the S15-rRNA complex. Nature Structural & Molecular Biology. 7: 273-277. PMID 10742169 DOI: 10.1038/74028  0.653
2000 Ennifar E, Nikulin A, Serganov A, Garber M, Ehresmann C, Nikonov S, Dumas P. The crystal structure of two UUCG tetraloops Acta Crystallographica Section A. 56: 274-274. DOI: 10.1107/S0108767300025861  0.624
2000 Nikulin A, Serganov A, Ennifar E, Tishchenko S, Nevskaya N, Shepard W, Portier C, Garber M, Ehresmann B, Ehresmann C, Nikonov S, Dumas P. Crystal structure of the S15-rRNA complex at 2.8 Å resolution Acta Crystallographica Section A. 56: 91-91. DOI: 10.1107/S0108767300022558  0.633
1999 Dorset DL, Dumas P, Cartier L, Lotz B. Dynamical scattering and electron diffraction from thin polymer lamellar crystals – poly(tert-butylethylene sulfide) Acta Crystallographica Section A. 55: 901-907. PMID 10927299 DOI: 10.1107/S0108767399004250  0.305
1999 Ennifar E, Yusupov M, Walter P, Marquet R, Ehresmann B, Ehresmann C, Dumas P. The crystal structure of the dimerization initiation site of genomic HIV-1 RNA reveals an extended duplex with two adenine bulges. Structure (London, England : 1993). 7: 1439-49. PMID 10574792 DOI: 10.1016/S0969-2126(00)80033-7  0.709
1999 Dumas P, Ennifar E, Walter P. Detection and treatment of twinning: an ­improvement and new results Acta Crystallographica Section D-Biological Crystallography. 55: 1179-1187. PMID 10329781 DOI: 10.1107/S0907444999004758  0.72
1999 Yusupov M, Walter P, Marquet R, Ehresmann C, Ehresmann B, Dumas P. Crystallization of the dimerization-initiation site of genomic HIV-1 RNA: preliminary crystallographic results. Acta Crystallographica. Section D, Biological Crystallography. 55: 281-4. PMID 10089425 DOI: 10.1107/S0907444998008506  0.505
1998 Bergdoll M, Eltis LD, Cameron AD, Dumas P, Bolin JT. All in the family: structural and evolutionary relationships among three modular proteins with diverse functions and variable assembly. Protein Science : a Publication of the Protein Society. 7: 1661-70. PMID 10082363 DOI: 10.1002/Pro.5560070801  0.328
1997 Bergdoll M, Remy M, Cagnon C, Masson J, Dumas P. Proline-dependent oligomerization with arm exchange Structure. 5: 391-401. PMID 9083108 DOI: 10.1016/S0969-2126(97)00196-2  0.342
1996 Ng JD, Felden B, Keith G, Dumas P, Brion P, Dietrich-Théobald A, Florentz C, Giegé R. Important parameters for RNA crystallogenesis Acta Crystallographica Section a Foundations of Crystallography. 52: C504-C504. DOI: 10.1107/S0108767396079421  0.355
1994 Dumas P, Bergdoll M, Cagnon C, Masson JM. Crystal structure and site-directed mutagenesis of a bleomycin resistance protein and their significance for drug sequestering. The Embo Journal. 13: 2483-2492. DOI: 10.1002/J.1460-2075.1994.Tb06535.X  0.354
1990 Westhof E, Dumas P, Moras D. Loop stereochemistry and dynamics in transfer RNA. Journal of Biomolecular Structure & Dynamics. 1: 337-55. PMID 6401114 DOI: 10.1080/07391102.1983.10507446  0.315
1990 Dumas P, Moras D, Florentz C, Giegé R, Verlaan P, Van Belkum A, Pleij CW. 3-D graphics modelling of the tRNA-like 3'-end of turnip yellow mosaic virus RNA: structural and functional implications. Journal of Biomolecular Structure & Dynamics. 4: 707-28. PMID 3270524 DOI: 10.1080/07391102.1987.10507674  0.43
1988 Westhof E, Dumas P, Moras D. Hydration of transfer RNA molecules: a crystallographic study. Biochimie. 70: 145-65. PMID 3134940 DOI: 10.1016/0300-9084(88)90056-9  0.356
1987 Romby P, Moras D, Dumas P, Ebel JP, Giegé R. Comparison of the tertiary structure of yeast tRNA(Asp) and tRNA(Phe) in solution. Chemical modification study of the bases. Journal of Molecular Biology. 195: 193-204. PMID 3309332 DOI: 10.1016/0022-2836(87)90336-6  0.335
1987 Behr J, Bergdoll M, Chevrier B, Dumas P, Lehn J, Moras D. Macrotricyclic and macropentacyclic ditopic receptor molecules.Synthesis, crystal structure and substrate binding. Tetrahedron Letters. 28: 1989-1992. DOI: 10.1016/S0040-4039(00)96027-1  0.333
1986 Moras D, Dock AC, Dumas P, Westhof E, Romby P, Ebel JP, Giegé R. Anticodon-anticodon interaction induces conformational changes in tRNA: yeast tRNAAsp, a model for tRNA-mRNA recognition. Proceedings of the National Academy of Sciences of the United States of America. 83: 932-6. PMID 3513167 DOI: 10.1073/Pnas.83.4.932  0.407
1985 Moras D, Dock AC, Dumas P, Westhof E, Romby P, Ebel JP, Giegé R. The structure of yeast tRNA(Asp). A model for tRNA interacting with messenger RNA. Journal of Biomolecular Structure & Dynamics. 3: 479-93. PMID 3917033 DOI: 10.1080/07391102.1985.10508436  0.379
1985 Dumas P, Ebel JP, Giegé R, Moras D, Thierry JC, Westhof E. Crystal structure of yeast tRNAAsp: atomic coordinates. Biochimie. 67: 597-606. PMID 3902098 DOI: 10.1016/S0300-9084(85)80199-1  0.317
1985 Romby P, Moras D, Bergdoll M, Dumas P, Vlassov VV, Westhof E, Ebel JP, Giegé R. Yeast tRNAAsp tertiary structure in solution and areas of interaction of the tRNA with aspartyl-tRNA synthetase. A comparative study of the yeast phenylalanine system by phosphate alkylation experiments with ethylnitrosourea. Journal of Molecular Biology. 184: 455-71. PMID 3900415 DOI: 10.1016/0022-2836(85)90294-3  0.387
1985 Westhof E, Dumas P, Moras D. Crystallographic refinement of yeast aspartic acid transfer RNA. Journal of Molecular Biology. 184: 119-45. PMID 3897553 DOI: 10.1016/0022-2836(85)90048-8  0.367
1984 Moras D, Dumas P, Giegé R, Westhof E. A molecular model for codon–anticodon recognition: the crystal structure of yeast tRNAAsp Acta Crystallographica Section a Foundations of Crystallography. 40: C49-C49. DOI: 10.1107/S0108767384098263  0.34
1982 Behr JP, Dumas P, Moras D. The oxonium (H3O+) cation: molecular structure of an oxonium-macrocyclic polyether complex Journal of the American Chemical Society. 104: 4540-4543. DOI: 10.1021/Ja00381A007  0.32
1977 Matsubayashi H, Chatani Y, Tadokoro H, Dumas P, Spassky N, Sigwalt P. Crystal Structures of Optically Active and Inactive Poly(tert-butylethylene sulfide) Macromolecules. 10: 996-1002. DOI: 10.1021/Ma60059A022  0.305
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