John P. Richard - Related publications

Affiliations: 
Chemistry University of Buffalo, Buffalo, NY, United States 
Website:
https://www.acsu.buffalo.edu/~jrichard/richard.html#education
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Romero-Téllez S, Cruz A, Masgrau L, González-Lafont À, Lluch JM. Accounting for the instantaneous disorder in the enzyme-substrate Michaelis complex to calculate the Gibbs free energy barrier of an enzyme reaction. Physical Chemistry Chemical Physics : Pccp. 23: 13042-13054. PMID 34100037 DOI: 10.1039/d1cp01338f   
2021 Wang Y, Hanrahan G, Azar FA, Mittermaier A. Binding interactions in a kinase active site modulate background ATP hydrolysis. Biochimica Et Biophysica Acta. Proteins and Proteomics. 140720. PMID 34597835 DOI: 10.1016/j.bbapap.2021.140720   
2021 Aregbesola OA, Kumar A, Mokoena MP, Olaniran AO. Classic Pentachlorophenol Hydroxylating Phenylalanine 4-Monooxygenase from Indigenous Bacillus tropicus Strain AOA-CPS1: Cloning, Overexpression, Purification, Characterization and Structural Homology Modelling. Applied Biochemistry and Biotechnology. PMID 34417677 DOI: 10.1007/s12010-021-03645-2   
2021 Zheng M, Li Y, Dong W, Feng S, Zhang Q, Wang W. Computational biotransformation of polyethylene terephthalate by depolymerase: A QM/MM approach. Journal of Hazardous Materials. 423: 127017. PMID 34464862 DOI: 10.1016/j.jhazmat.2021.127017   
2021 Guo J, Wang Y, Gao W, Wang X, Gao X, Man Z, Cai Z, Qing Q. Gene Cloning, Functional Expression, and Characterization of a Novel GH46 Chitosanase from Streptomyces avermitilis (SaCsn46A). Applied Biochemistry and Biotechnology. PMID 34542822 DOI: 10.1007/s12010-021-03687-6   
2021 Bose I, Zhao Y. Selective Hydrolysis of Aryl Esters under Acidic and Neutral Conditions by a Synthetic Aspartic Protease Mimic. Acs Catalysis. 11: 3938-3942. PMID 34422449 DOI: 10.1021/acscatal.1c00371   
2021 Somma V, Calvio C, Rabuffetti M, Rama E, Speranza G, Morelli CF. An overall framework for the E. coli γ-glutamyltransferase-catalyzed transpeptidation reactions. Bioorganic Chemistry. 115: 105217. PMID 34364051 DOI: 10.1016/j.bioorg.2021.105217   
2021 Heid E, Goldman S, Sankaranarayanan K, Coley CW, Flamm C, Green WH. EHreact: Extended Hasse Diagrams for the Extraction and Scoring of Enzymatic Reaction Templates. Journal of Chemical Information and Modeling. PMID 34587449 DOI: 10.1021/acs.jcim.1c00921   
2021 Pal S, Plapp BV. The Thr45Gly substitution in yeast alcohol dehydrogenase substantially decreases catalysis, alters pH dependencies, and disrupts the proton relay system. Chemico-Biological Interactions. 349: 109650. PMID 34529977 DOI: 10.1016/j.cbi.2021.109650   
2021 Erickson E, Shakespeare TJ, Bratti F, Buss BL, Graham R, Hawkins MA, König G, Michener WE, Miscall J, Ramirez KJ, Rorrer NA, Zahn M, Pickford AR, McGeehan JE, Beckham G. Comparative performance of PETase as a function of reaction conditions, substrate properties, and product accumulation. Chemsuschem. PMID 34587366 DOI: 10.1002/cssc.202101932   
2021 Kummer MJ, Lee YS, Yuan M, Alkotaini B, Zhao J, Blumenthal E, Minteer SD. Substrate Channeling by a Rationally Designed Fusion Protein in a Biocatalytic Cascade. Jacs Au. 1: 1187-1197. PMID 34467357 DOI: 10.1021/jacsau.1c00180   
2021 Chakraborty K, Dhara S. Conoidecyclics A-C from marine macroalga Turbinaria conoides: Newly described natural macrolides with prospective bioactive properties. Phytochemistry. 191: 112909. PMID 34419665 DOI: 10.1016/j.phytochem.2021.112909   
2021 Ghosh RK, Hilario E, Liu V, Wang Y, Niks D, Holmes JB, Sakhrani VV, Mueller LJ, Dunn MF. Mutation of βGln114 to Ala Alters the Stabilities of Allosteric States in Tryptophan Synthase Catalysis. Biochemistry. PMID 34595921 DOI: 10.1021/acs.biochem.1c00383   
2021 Wang Y, Mittermaier AK. Characterizing Bi-substrate Enzyme Kinetics at High Resolution by 2D-ITC. Analytical Chemistry. PMID 34514786 DOI: 10.1021/acs.analchem.1c02705   
2021 Kang JM, Lê HG, Na BK, Yoo WG. pH-Dependent Structural Dynamics of Cathepsin D-Family Aspartic Peptidase of . Pathogens (Basel, Switzerland). 10. PMID 34578162 DOI: 10.3390/pathogens10091128   
2021 Pei XD, Lu LH, Yue SY, Li Y, Liu XL, Li F, Wu KJ, Wang CH. Characterization of a Novel Shewanella algae Arginine Decarboxylase Expressed in Escherichia coli. Molecular Biotechnology. PMID 34532832 DOI: 10.1007/s12033-021-00397-6   
2021 Dai L, Chang Z, Yang J, Liu W, Yang Y, Chen CC, Zhang L, Huang JW, Sun Y, Guo RT. Structural investigation of a thermostable 1,2-β-mannobiose phosphorylase from Thermoanaerobacter sp. X-514. Biochemical and Biophysical Research Communications. 579: 54-61. PMID 34587555 DOI: 10.1016/j.bbrc.2021.09.046   
2021 Bandyopadhyay A, Saxena AK. Structural and ATPase activity analysis of nucleotide binding domain of Rv3870 enzyme of M. tuberculosis ESX-1 system. International Journal of Biological Macromolecules. PMID 34428493 DOI: 10.1016/j.ijbiomac.2021.08.130   
2021 Lin C, Tang J, Zheng R, Zheng Y. [Synthesis of (S)-4-fluorophenylglycine by using immobilized amidase based on metal-organic framework]. Sheng Wu Gong Cheng Xue Bao = Chinese Journal of Biotechnology. 37: 2936-2946. PMID 34472310 DOI: 10.13345/j.cjb.200616   
2021 Yan Y, Guan W, Li X, Gao K, Xu X, Liu B, Zhang W, Zhang Y. β-galactosidase GALA from with high transgalactosylation activity. Bioengineered. PMID 34606421 DOI: 10.1080/21655979.2021.1988370   
2021 Tsagogiannis E, Vandera E, Primikyri A, Asimakoula S, Tzakos AG, Gerothanassis IP, Koukkou AI. Characterization of Protocatechuate 4,5-Dioxygenase from Sphe3 and In Situ Reaction Monitoring in the NMR Tube. International Journal of Molecular Sciences. 22. PMID 34502555 DOI: 10.3390/ijms22179647   
2021 Sharma V, Pugazhenthi G, Vasanth D. Production and characterization of a novel thermostable laccase from Bacillus licheniformis VNQ and its application in synthesis of bioactive 1,4-naphthoquinones. Journal of Bioscience and Bioengineering. PMID 34629297 DOI: 10.1016/j.jbiosc.2021.09.008   
2021 Li Q, Pan Y, Li H, Lenertz M, Reed K, Jordahl D, Bjerke T, Ugrinov A, Chen B, Yang Z. Cascade/Parallel Biocatalysis via Multi-enzyme Encapsulation on Metal-Organic Materials for Rapid and Sustainable Biomass Degradation. Acs Applied Materials & Interfaces. PMID 34478257 DOI: 10.1021/acsami.1c12209   
2021 Gama SR, Stankovic T, Hupp K, Al Hejami A, McClean M, Evans A, Beauchemin D, Hammerschmidt F, Pallitsch K, Zechel DL. Biosynthesis of the Fungal Organophosphonate Fosfonochlorin Involves an Iron(II) and 2-(Oxo)glutarate Dependent Oxacyclase. Chembiochem : a European Journal of Chemical Biology. PMID 34375042 DOI: 10.1002/cbic.202100352   
2021 Tserendavga B, Ohshima N, Fujita C, Yuzawa K, Ohshima M, Yanaka N, Minamishima YA, Izumi T. Characterization of recombinant murine GDE4 and GDE7, enzymes producing lysophosphatidic acid and/or cyclic phosphatidic acid. Journal of Biochemistry. PMID 34523685 DOI: 10.1093/jb/mvab091   
2021 Gao X, Wu M, Zhang W, Li C, Guo RT, Dai Y, Liu W, Mao S, Lu F, Qin HM. Structural Basis of Salicylic Acid Decarboxylase Reveals a Unique Substrate Recognition Mode and Access Channel. Journal of Agricultural and Food Chemistry. PMID 34553918 DOI: 10.1021/acs.jafc.1c04091   
2021 Si J, Wu Y, Ma HF, Cao YJ, Sun YF, Cui BK. Selection of a pH- and temperature-stable laccase from Ganoderma australe and its application for bioremediation of textile dyes. Journal of Environmental Management. 299: 113619. PMID 34467865 DOI: 10.1016/j.jenvman.2021.113619   
2021 Jia Q, Zeng H, Li H, Xiao N, Tang J, Gao S, Zhang J, Xie W. The C-terminal loop of guanosine deaminase is essential to catalysis. Chemical Communications (Cambridge, England). PMID 34477187 DOI: 10.1039/d1cc03042f   
2021 Li J, Li Z, Cao M, Liu J. Expression and characterization of catechol 1,2-dioxygenase from Oceanimonas marisflavi 102-Na3. Protein Expression and Purification. 105964. PMID 34454050 DOI: 10.1016/j.pep.2021.105964   
2021 Zhao J, Esque J, André I, O'Donohue MJ, Fauré R. Synthesis of α-l-Araf and β-d-Galf series furanobiosides using mutants of a GH51 α-l-arabinofuranosidase. Bioorganic Chemistry. 116: 105245. PMID 34482168 DOI: 10.1016/j.bioorg.2021.105245   
2021 Padavattan S, Jos S, Gogoi H, Bagautdinov B. Crystal structure of enoyl-CoA hydratase from Thermus thermophilus HB8. Acta Crystallographica. Section F, Structural Biology Communications. 77: 148-155. PMID 33949975 DOI: 10.1107/S2053230X21004593   
2021 Wang L, Sun P, Yang Y, Qiao H, Tian H, Wu D, Yang S, Yuan Q, Wang J. Preparation of ZIF@ADH/NAD-MSN/LDH Core Shell Nanocomposites for the Enhancement of Coenzyme Catalyzed Double Enzyme Cascade. Nanomaterials (Basel, Switzerland). 11. PMID 34578486 DOI: 10.3390/nano11092171   
2021 Currie MJ, Manjunath L, Horne CR, Rendle PM, Subramanian R, Friemann R, Fairbanks AJ, Muscroft-Taylor AC, North RA, Dobson RCJ. N-Acetylmannosamine-6-phosphate 2-epimerase uses a novel substrate-assisted mechanism to catalyze amino sugar epimerization. The Journal of Biological Chemistry. 101113. PMID 34437902 DOI: 10.1016/j.jbc.2021.101113   
2021 Cheng F, Zhai QY, Gao XF, Liu HT, Qiu S, Wang YJ, Zheng YG. Tuning enzymatic properties by protein engineering toward catalytic tetrad of carbonyl reductase. Biotechnology and Bioengineering. PMID 34436762 DOI: 10.1002/bit.27925   
2021 Valentino H, Sobrado P. Characterization of a Nitro-Forming Enzyme Involved in Fosfazinomycin Biosynthesis. Biochemistry. PMID 34516102 DOI: 10.1021/acs.biochem.1c00512   
2021 Li C, Zhang W, Wei C, Gao X, Mao S, Lu F, Qin HM. Continuous Spectrophotometric Assay for High-Throughput Screening of Predominant d-Allulose 3-Epimerases. Journal of Agricultural and Food Chemistry. PMID 34569239 DOI: 10.1021/acs.jafc.1c04716   
2021 Bai L, Kim J, Son KH, Shin DH, Ku BH, Kim DY, Park HY. Novel Anti-Fungal d-Laminaripentaose-Releasing Endo-β-1,3-glucanase with a RICIN-like Domain from HY-13. Biomolecules. 11. PMID 34439747 DOI: 10.3390/biom11081080   
2021 Wei X, Matsuyama T, Sato H, Yan D, Chan PM, Miyamoto K, Uchiyama M, Matsuda Y. Molecular and Computational Bases for Spirofuranone Formation in Setosusin Biosynthesis. Journal of the American Chemical Society. PMID 34644070 DOI: 10.1021/jacs.1c08336   
2021 Gabrielli V, Muñoz-García JC, Pergolizzi G, de Andrade P, Khimyak Y, Field RA, Angulo J. Molecular recognition of natural and non-natural substrates by cellodextrin phosphorylase from Ruminiclostridium thermocellum investigated by NMR spectroscopy. Chemistry (Weinheim An Der Bergstrasse, Germany). PMID 34436794 DOI: 10.1002/chem.202102039   
2021 Ren S, Cheng X, Ma L. Identification of methionine adenosyltransferase with high diastereoselectivity for biocatalytic synthesis of (S)-S-adenosyl-l-methionine and exploring its relationship with fluorinated biosynthetic pathway. Enzyme and Microbial Technology. 150: 109881. PMID 34489034 DOI: 10.1016/j.enzmictec.2021.109881   
2021 Cheng Z, Jiang S, Zhou Z. Substrate access tunnel engineering for improving the catalytic activity of a thermophilic nitrile hydratase toward pyridine and pyrazine nitriles. Biochemical and Biophysical Research Communications. 575: 8-13. PMID 34454178 DOI: 10.1016/j.bbrc.2021.08.059   
2021 Lee R, Kim V, Chun Y, Kim D. Structure-Functional Analysis of Human Cytochrome P450 2C8 Using Directed Evolution. Pharmaceutics. 13. PMID 34575505 DOI: 10.3390/pharmaceutics13091429   
2021 Espina G, Atalah J, Blamey JM. Extremophilic Oxidoreductases for the Industry: Five Successful Examples With Promising Projections. Frontiers in Bioengineering and Biotechnology. 9: 710035. PMID 34458243 DOI: 10.3389/fbioe.2021.710035   
2021 Wander R, Kaminski AM, Xu Y, Pagadala V, Krahn JM, Pham TQ, Liu J, Pedersen LC. Deciphering the substrate recognition mechanisms of the heparan sulfate 3--sulfotransferase-3. Rsc Chemical Biology. 2: 1239-1248. PMID 34458837 DOI: 10.1039/d1cb00079a   
2021 Hindson SA, Bunzel HA, Frank B, Svistunenko DA, Williams C, van der Kamp MW, Mulholland AJ, Pudney CR, Anderson JLR. Rigidifying a Enzyme Increases Activity and Induces a Negative Activation Heat Capacity. Acs Catalysis. 11: 11532-11541. PMID 34557328 DOI: 10.1021/acscatal.1c01776   
2021 Zhu L, Song Y, Chang C, Ma H, Yang L, Deng Z, Deng W, Qu X. Engineering Leifsonia Alcohol Dehydrogenase for Thermostability and Catalytic Efficiency by Enhancing Subunit Interactions. Chembiochem : a European Journal of Chemical Biology. PMID 34549865 DOI: 10.1002/cbic.202100431   
2021 Min K, Kim H, Park HJ, Lee S, Jung YJ, Yoon JH, Lee JS, Park K, Yoo YJ, Joo JC. Improving the catalytic performance of xylanase from Bacillus circulans through structure-based rational design. Bioresource Technology. 340: 125737. PMID 34426235 DOI: 10.1016/j.biortech.2021.125737   
2021 Kung J, Meier AK, Willistein M, Weidenweber S, Demmer U, Ermler U, Boll M. Structural basis of cyclic 1,3-diene forming acyl-coenzyme A dehydrogenases. Chembiochem : a European Journal of Chemical Biology. PMID 34555236 DOI: 10.1002/cbic.202100421   
2021 Vinogradov AA, Nagano M, Goto Y, Suga H. Site-Specific Nonenzymatic Peptide S/O-Glutamylation Reveals the Extent of Substrate Promiscuity in Glutamate Elimination Domains. Journal of the American Chemical Society. 143: 13358-13369. PMID 34392675 DOI: 10.1021/jacs.1c06470   
2021 Yan DN, Cai LX, Cheng PM, Hu SJ, Zhou LP, Sun QF. Photooxidase Mimicking with Adaptive Coordination Molecular Capsules. Journal of the American Chemical Society. PMID 34553600 DOI: 10.1021/jacs.1c06390