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Helen M. Berman - Publications

Affiliations: 
Chemistry and Chemical Biology Rutgers University, New Brunswick, New Brunswick, NJ, United States 
Area:
crystallography
Website:
http://proteomics.rutgers.edu/?q=faculty/berman

201 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Goodsell DS, Zardecki C, Berman HM, Burley SK. Insights from 20 years of the Molecule of the Month. Biochemistry and Molecular Biology Education : a Bimonthly Publication of the International Union of Biochemistry and Molecular Biology. PMID 32558264 DOI: 10.1002/Bmb.21360  0.36
2018 Young JY, Westbrook JD, Feng Z, Peisach E, Persikova I, Sala R, Sen S, Berrisford JM, Swaminathan GJ, Oldfield TJ, Gutmanas A, Igarashi R, Armstrong DR, Baskaran K, Chen L, ... ... Berman HM, et al. Worldwide Protein Data Bank biocuration supporting open access to high-quality 3D structural biology data. Database : the Journal of Biological Databases and Curation. 2018. PMID 29688351 DOI: 10.1093/Database/Bay002  0.36
2017 Gore S, Sanz García E, Hendrickx PMS, Gutmanas A, Westbrook JD, Yang H, Feng Z, Baskaran K, Berrisford JM, Hudson BP, Ikegawa Y, Kobayashi N, Lawson CL, Mading S, Mak L, ... ... Berman HM, et al. Validation of Structures in the Protein Data Bank. Structure (London, England : 1993). 25: 1916-1927. PMID 29174494 DOI: 10.1016/J.Str.2017.10.009  0.36
2017 Young JY, Westbrook JD, Feng Z, Sala R, Peisach E, Oldfield TJ, Sen S, Gutmanas A, Armstrong DR, Berrisford JM, Chen L, Chen M, Di Costanzo L, Dimitropoulos D, Gao G, ... ... Berman HM, et al. OneDep: Unified wwPDB System for Deposition, Biocuration, and Validation of Macromolecular Structures in the PDB Archive. Structure (London, England : 1993). PMID 28190782 DOI: 10.1107/S0108767317099536  0.36
2016 Rose PW, Prlić A, Altunkaya A, Bi C, Bradley AR, Christie CH, Costanzo LD, Duarte JM, Dutta S, Feng Z, Green RK, Goodsell DS, Hudson B, Kalro T, Lowe R, ... ... Berman HM, et al. The RCSB protein data bank: integrative view of protein, gene and 3D structural information. Nucleic Acids Research. PMID 27794042 DOI: 10.1093/Nar/Gkw1000  0.36
2016 Adams PD, Aertgeerts K, Bauer C, Bell JA, Berman HM, Bhat TN, Blaney JM, Bolton E, Bricogne G, Brown D, Burley SK, Case DA, Clark KL, Darden T, Emsley P, et al. Outcome of the First wwPDB/CCDC/D3R Ligand Validation Workshop. Structure (London, England : 1993). 24: 502-8. PMID 27050687 DOI: 10.1016/J.Str.2016.02.017  0.36
2015 Goodsell DS, Dutta S, Zardecki C, Voigt M, Berman HM, Burley SK. The RCSB PDB "Molecule of the Month": Inspiring a Molecular View of Biology. Plos Biology. 13: e1002140. PMID 25942442 DOI: 10.1371/Journal.Pbio.1002140  0.36
2015 Rose PW, Prli? A, Bi C, Bluhm WF, Christie CH, Dutta S, Green RK, Goodsell DS, Westbrook JD, Woo J, Young J, Zardecki C, Berman HM, Bourne PE, Burley SK. The RCSB Protein Data Bank: views of structural biology for basic and applied research and education. Nucleic Acids Research. 43: D345-56. PMID 25428375 DOI: 10.1093/Nar/Gku1214  1
2015 Quinn GB, Bi C, Christie CH, Pang K, Prli? A, Nakane T, Zardecki C, Voigt M, Berman HM, Bourne PE, Rose PW. RCSB PDB Mobile: iOS and Android mobile apps to provide data access and visualization to the RCSB Protein Data Bank. Bioinformatics (Oxford, England). 31: 126-7. PMID 25183487 DOI: 10.1093/Bioinformatics/Btu596  0.36
2015 Goodsell DS, Dutta S, Zardecki C, Voigt M, Berman HM, Burley SK. The RCSB PDB “Molecule of the Month”: Inspiring a Molecular View of Biology Plos Biology. 13. DOI: 10.1371/journal.pbio.1002140  0.36
2015 Berman HM, Rose PW, Dutta S, Zardecki C, Prli? A. The protein data bank: Overview and tools for drug discovery Nato Science For Peace and Security Series a: Chemistry and Biology. 38: 93-106. DOI: 10.1007/978-94-017-9719-1_8  1
2015 Berman HM, Rose PW, Dutta S, Zardecki C, Prli? A. The protein data bank: Overview and tools for drug discovery Nato Science For Peace and Security Series a: Chemistry and Biology. 38: 93-106. DOI: 10.1007/978-94-017-9719-1_8  1
2014 Berman HM, Burley SK, Kleywegt GJ, Nakamura H, Markley JL. Response to On prompt update of literature references in the Protein Data Bank. Acta Crystallographica. Section D, Biological Crystallography. 70: 2780. PMID 25286863 DOI: 10.1107/S1399004714020513  1
2014 Berman HM, Burley SK, Kleywegt GJ, Nakamura H, Markley JL. Response to On prompt update of literature references in the Protein Data Bank. Acta Crystallographica. Section D, Biological Crystallography. 70: 2780. PMID 25286863 DOI: 10.1107/S1399004714020513  1
2014 Berman HM, Kleywegt GJ, Nakamura H, Markley JL. The Protein Data Bank archive as an open data resource. Journal of Computer-Aided Molecular Design. 28: 1009-14. PMID 25062767 DOI: 10.1007/S10822-014-9770-Y  1
2014 Berman HM, Kleywegt GJ, Nakamura H, Markley JL. The Protein Data Bank archive as an open data resource. Journal of Computer-Aided Molecular Design. 28: 1009-14. PMID 25062767 DOI: 10.1007/S10822-014-9770-Y  1
2014 Coimbatore Narayanan B, Westbrook J, Ghosh S, Petrov AI, Sweeney B, Zirbel CL, Leontis NB, Berman HM. The Nucleic Acid Database: new features and capabilities. Nucleic Acids Research. 42: D114-22. PMID 24185695 DOI: 10.1093/Nar/Gkt980  1
2014 Coimbatore Narayanan B, Westbrook J, Ghosh S, Petrov AI, Sweeney B, Zirbel CL, Leontis NB, Berman HM. The Nucleic Acid Database: new features and capabilities. Nucleic Acids Research. 42: D114-22. PMID 24185695 DOI: 10.1093/Nar/Gkt980  1
2014 Dutta S, Dimitropoulos D, Feng Z, Persikova I, Sen S, Shao C, Westbrook J, Young J, Zhuravleva MA, Kleywegt GJ, Berman HM. Improving the representation of peptide-like inhibitor and antibiotic molecules in the Protein Data Bank. Biopolymers. 101: 659-68. PMID 24173824 DOI: 10.1002/Bip.22434  1
2014 Dutta S, Dimitropoulos D, Feng Z, Persikova I, Sen S, Shao C, Westbrook J, Young J, Zhuravleva MA, Kleywegt GJ, Berman HM. Improving the representation of peptide-like inhibitor and antibiotic molecules in the Protein Data Bank. Biopolymers. 101: 659-68. PMID 24173824 DOI: 10.1002/Bip.22434  1
2013 Berman H, Kleywegt GJ, Nakamura H, Markley JL. Comment on on the propagation of errors by Jaskolski (2013). Acta Crystallographica. Section D, Biological Crystallography. 69: 2297. PMID 24311571 DOI: 10.1107/S090744491302917X  1
2013 Berman H, Kleywegt GJ, Nakamura H, Markley JL. Comment on timely deposition of macromolecular structures is necessary for peer review by Joosten et al. (2013). Acta Crystallographica. Section D, Biological Crystallography. 69: 2296. PMID 24311570 DOI: 10.1107/S0907444913029168  1
2013 Young JY, Feng Z, Dimitropoulos D, Sala R, Westbrook J, Zhuravleva M, Shao C, Quesada M, Peisach E, Berman HM. Chemical annotation of small and peptide-like molecules at the Protein Data Bank. Database : the Journal of Biological Databases and Curation. 2013: bat079. PMID 24291661 DOI: 10.1093/Database/Bat079  1
2013 Young JY, Feng Z, Dimitropoulos D, Sala R, Westbrook J, Zhuravleva M, Shao C, Quesada M, Peisach E, Berman HM. Chemical annotation of small and peptide-like molecules at the Protein Data Bank. Database : the Journal of Biological Databases and Curation. 2013: bat079. PMID 24291661 DOI: 10.1093/Database/Bat079  1
2013 Berman HM, Kleywegt GJ, Nakamura H, Markley JL. How community has shaped the Protein Data Bank. Structure (London, England : 1993). 21: 1485-91. PMID 24010707 DOI: 10.1016/J.Str.2013.07.010  1
2013 Berman HM, Kleywegt GJ, Nakamura H, Markley JL. How community has shaped the Protein Data Bank. Structure (London, England : 1993). 21: 1485-91. PMID 24010707 DOI: 10.1016/J.Str.2013.07.010  1
2013 Trewhella J, Hendrickson WA, Kleywegt GJ, Sali A, Sato M, Schwede T, Svergun DI, Tainer JA, Westbrook J, Berman HM. Report of the wwPDB Small-Angle Scattering Task Force: data requirements for biomolecular modeling and the PDB. Structure (London, England : 1993). 21: 875-81. PMID 23747111 DOI: 10.1016/J.Str.2013.04.020  1
2013 Trewhella J, Hendrickson WA, Kleywegt GJ, Sali A, Sato M, Schwede T, Svergun DI, Tainer JA, Westbrook J, Berman HM. Report of the wwPDB Small-Angle Scattering Task Force: data requirements for biomolecular modeling and the PDB. Structure (London, England : 1993). 21: 875-81. PMID 23747111 DOI: 10.1016/J.Str.2013.04.020  1
2013 Berman HM, Coimbatore Narayanan B, Costanzo LD, Dutta S, Ghosh S, Hudson BP, Lawson CL, Peisach E, Prli? A, Rose PW, Shao C, Yang H, Young J, Zardecki C. Trendspotting in the Protein Data Bank Febs Letters. 587: 1036-1045. PMID 23337870 DOI: 10.1016/J.Febslet.2012.12.029  1
2013 Rose PW, Bi C, Bluhm WF, Christie CH, Dimitropoulos D, Dutta S, Green RK, Goodsell DS, Prlic A, Quesada M, Quinn GB, Ramos AG, Westbrook JD, Young J, Zardecki C, ... Berman HM, et al. The RCSB Protein Data Bank: new resources for research and education. Nucleic Acids Research. 41: D475-82. PMID 23193259 DOI: 10.1093/Nar/Gks1200  1
2013 Rose PW, Bi C, Bluhm WF, Christie CH, Dimitropoulos D, Dutta S, Green RK, Goodsell DS, Prlic A, Quesada M, Quinn GB, Ramos AG, Westbrook JD, Young J, Zardecki C, ... Berman HM, et al. The RCSB Protein Data Bank: new resources for research and education. Nucleic Acids Research. 41: D475-82. PMID 23193259 DOI: 10.1093/Nar/Gks1200  1
2013 Berman HM, Kleywegt GJ, Nakamura H, Markley JL. The future of the protein data bank. Biopolymers. 99: 218-22. PMID 23023942 DOI: 10.1002/Bip.22132  1
2013 Berman HM, Kleywegt GJ, Nakamura H, Markley JL. The future of the protein data bank. Biopolymers. 99: 218-22. PMID 23023942 DOI: 10.1002/Bip.22132  1
2013 Goodsell DS, Burley SK, Berman HM. Revealing structural views of biology Biopolymers. 99: 817-824. DOI: 10.1002/bip.22338  1
2012 Berman HM. Creating a community resource for protein science Protein Science. 21: 1587-1596. PMID 22969036 DOI: 10.1002/Pro.2154  1
2012 Ludtke SJ, Lawson CL, Kleywegt GJ, Berman H, Chiu W. The 2010 cryo-EM modeling challenge. Biopolymers. 97: 651-4. PMID 22696402 DOI: 10.1002/Bip.22081  1
2012 Gifford LK, Carter LG, Gabanyi MJ, Berman HM, Adams PD. The Protein Structure Initiative Structural Biology Knowledgebase Technology Portal: a structural biology web resource. Journal of Structural and Functional Genomics. 13: 57-62. PMID 22527514 DOI: 10.1007/S10969-012-9133-7  1
2012 Gifford LK, Carter LG, Gabanyi MJ, Berman HM, Adams PD. The Protein Structure Initiative Structural Biology Knowledgebase Technology Portal: a structural biology web resource. Journal of Structural and Functional Genomics. 13: 57-62. PMID 22527514 DOI: 10.1007/S10969-012-9133-7  1
2012 Berman HM, Kleywegt GJ, Nakamura H, Markley JL. The Protein Data Bank at 40: reflecting on the past to prepare for the future. Structure (London, England : 1993). 20: 391-6. PMID 22404998 DOI: 10.1016/J.Str.2012.01.010  1
2012 Berman HM, Kleywegt GJ, Nakamura H, Markley JL. The Protein Data Bank at 40: reflecting on the past to prepare for the future. Structure (London, England : 1993). 20: 391-6. PMID 22404998 DOI: 10.1016/J.Str.2012.01.010  1
2012 Henderson R, Sali A, Baker ML, Carragher B, Devkota B, Downing KH, Egelman EH, Feng Z, Frank J, Grigorieff N, Jiang W, Ludtke SJ, Medalia O, Penczek PA, Rosenthal PB, ... ... Berman HM, et al. Outcome of the first electron microscopy validation task force meeting. Structure (London, England : 1993). 20: 205-14. PMID 22325770 DOI: 10.1016/J.Str.2011.12.014  1
2012 Henderson R, Sali A, Baker ML, Carragher B, Devkota B, Downing KH, Egelman EH, Feng Z, Frank J, Grigorieff N, Jiang W, Ludtke SJ, Medalia O, Penczek PA, Rosenthal PB, ... ... Berman HM, et al. Outcome of the first electron microscopy validation task force meeting. Structure (London, England : 1993). 20: 205-14. PMID 22325770 DOI: 10.1016/J.Str.2011.12.014  1
2012 Green RK, Berman HM. An overview of structural studies of the collagen triple helix Biomolecular Forms and Functions: a Celebration of 50 Years of the Ramachandran Map. 17-37. DOI: 10.1142/9789814449144_0002  1
2011 Gabanyi MJ, Adams PD, Arnold K, Bordoli L, Carter LG, Flippen-Andersen J, Gifford L, Haas J, Kouranov A, McLaughlin WA, Micallef DI, Minor W, Shah R, Schwede T, Tao YP, ... ... Berman HM, et al. The Structural Biology Knowledgebase: a portal to protein structures, sequences, functions, and methods. Journal of Structural and Functional Genomics. 12: 45-54. PMID 21472436 DOI: 10.1007/S10969-011-9106-2  1
2011 Gabanyi MJ, Adams PD, Arnold K, Bordoli L, Carter LG, Flippen-Andersen J, Gifford L, Haas J, Kouranov A, McLaughlin WA, Micallef DI, Minor W, Shah R, Schwede T, Tao YP, ... ... Berman HM, et al. The Structural Biology Knowledgebase: a portal to protein structures, sequences, functions, and methods. Journal of Structural and Functional Genomics. 12: 45-54. PMID 21472436 DOI: 10.1007/S10969-011-9106-2  1
2011 Bluhm WF, Beran B, Bi C, Dimitropoulos D, Prliá A, Quinn GB, Rose PW, Shah C, Young J, Yukich B, Berman HM, Bourne PE. Quality assurance for the query and distribution systems of the RCSB Protein Data Bank Database. 2011. PMID 21382834 DOI: 10.1093/Database/Bar003  1
2011 Ludtke SJ, Lawson CL, Kleywegt GJ, Berman HM, Chiu W. Workshop on the validation and modeling of electron cryo-microscopy structures of biological nanomachines. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 369-73. PMID 21121065 DOI: 10.1142/9789814335058_0039  1
2011 Ludtke SJ, Lawson CL, Kleywegt GJ, Berman HM, Chiu W. Workshop on the validation and modeling of electron cryo-microscopy structures of biological nanomachines. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 369-73. PMID 21121065 DOI: 10.1142/9789814335058_0039  1
2011 Rose PW, Beran B, Bi C, Bluhm WF, Dimitropoulos D, Goodsell DS, Prli? A, Quesada M, Quinn GB, Westbrook JD, Young J, Yukich B, Zardecki C, Berman HM, Bourne PE. The RCSB Protein Data Bank: Redesigned web site and web services Nucleic Acids Research. 39: D392-D401. PMID 21036868 DOI: 10.1093/Nar/Gkq1021  1
2011 Lawson CL, Baker ML, Best C, Bi C, Dougherty M, Feng P, van Ginkel G, Devkota B, Lagerstedt I, Ludtke SJ, Newman RH, Oldfield TJ, Rees I, Sahni G, Sala R, ... ... Berman HM, et al. EMDataBank.org: unified data resource for CryoEM. Nucleic Acids Research. 39: D456-64. PMID 20935055 DOI: 10.1093/Nar/Gkq880  1
2011 Lawson CL, Baker ML, Best C, Bi C, Dougherty M, Feng P, van Ginkel G, Devkota B, Lagerstedt I, Ludtke SJ, Newman RH, Oldfield TJ, Rees I, Sahni G, Sala R, ... ... Berman HM, et al. EMDataBank.org: unified data resource for CryoEM. Nucleic Acids Research. 39: D456-64. PMID 20935055 DOI: 10.1093/Nar/Gkq880  1
2011 Bourne PE, Beran B, Bi C, Bluhm WF, Dimitropoulos D, Feng Z, Goodsell DS, Prli? A, Quinn GB, Rose PW, Westbrook J, Yukich B, Young J, Zardecki C, Berman HM. The evolution of the RCSB Protein Data Bank website Wiley Interdisciplinary Reviews: Computational Molecular Science. 1: 782-789. DOI: 10.1002/Wcms.57  1
2010 Dutta S, Zardecki C, Goodsell DS, Berman HM. Promoting a structural view of biology for varied audiences: an overview of RCSB PDB resources and experiences. Journal of Applied Crystallography. 43: 1224-1229. PMID 20877496 DOI: 10.1107/S002188981002371X  0.36
2010 Berman HM, Kleywegt GJ, Nakamura H, Markley JL, Burley SK. Safeguarding the integrity of protein archive. Nature. 463: 425. PMID 20110969 DOI: 10.1038/463425C  1
2010 Berman HM, Kleywegt GJ, Nakamura H, Markley JL, Burley SK. Safeguarding the integrity of protein archive. Nature. 463: 425. PMID 20110969 DOI: 10.1038/463425C  1
2010 Dutta S, Zardecki C, Goodsell DS, Berman HM. Promoting a structural view of biology for varied audiences: An overview of RCSB PDB resources and experiences Journal of Applied Crystallography. 43: 1224-1229. DOI: 10.1107/S002188981002371X  1
2010 Dutta S, Zardecki C, Goodsell DS, Berman HM. Promoting a structural view of biology for varied audiences: An overview of RCSB PDB resources and experiences Journal of Applied Crystallography. 43: 1224-1229. DOI: 10.1107/S002188981002371X  0.36
2010 MacIoce TP, Berman HM, Constable D. Management of interstate 95 in Pennsylvania Bridge Maintenance, Safety, Management and Life-Cycle Optimization - Proceedings of the 5th International Conference On Bridge Maintenance, Safety and Management. 3367-3371.  0.01
2009 Hudson BP, Quispe J, Lara-González S, Kim Y, Berman HM, Arnold E, Ebright RH, Lawson CL. Three-dimensional EM structure of an intact activator-dependent transcription initiation complex Proceedings of the National Academy of Sciences of the United States of America. 106: 19830-19835. PMID 19903881 DOI: 10.1073/Pnas.0908782106  1
2009 Locasale JW, Napoli AA, Chen S, Berman HM, Lawson CL. Signatures of Protein-DNA Recognition in Free DNA Binding Sites Journal of Molecular Biology. 386: 1054-1065. PMID 19244617 DOI: 10.1016/J.Jmb.2009.01.007  1
2009 Schwede T, Sali A, Honig B, Levitt M, Berman HM, Jones D, Brenner SE, Burley SK, Das R, Dokholyan NV, Dunbrack RL, Fidelis K, Fiser A, Godzik A, Huang YJ, et al. Outcome of a workshop on applications of protein models in biomedical research. Structure (London, England : 1993). 17: 151-9. PMID 19217386 DOI: 10.1016/J.Str.2008.12.014  1
2009 Schwede T, Sali A, Honig B, Levitt M, Berman HM, Jones D, Brenner SE, Burley SK, Das R, Dokholyan NV, Dunbrack RL, Fidelis K, Fiser A, Godzik A, Huang YJ, et al. Outcome of a workshop on applications of protein models in biomedical research. Structure (London, England : 1993). 17: 151-9. PMID 19217386 DOI: 10.1016/J.Str.2008.12.014  1
2009 Dutta S, Burkhardt K, Young J, Swaminathan GJ, Matsuura T, Henrick K, Nakamura H, Berman HM. Data deposition and annotation at the worldwide protein data bank. Molecular Biotechnology. 42: 1-13. PMID 19082769 DOI: 10.1007/S12033-008-9127-7  1
2009 Dutta S, Burkhardt K, Young J, Swaminathan GJ, Matsuura T, Henrick K, Nakamura H, Berman HM. Data deposition and annotation at the worldwide protein data bank. Molecular Biotechnology. 42: 1-13. PMID 19082769 DOI: 10.1007/S12033-008-9127-7  1
2009 Arnold K, Kiefer F, Kopp J, Battey JND, Podvinec M, Westbrook JD, Berman HM, Bordoli L, Schwede T. The Protein Model Portal Journal of Structural and Functional Genomics. 10: 1-8. PMID 19037750 DOI: 10.1007/S10969-008-9048-5  1
2009 Berman HM, Westbrook JD, Gabanyi MJ, Tao W, Shah R, Kouranov A, Schwede T, Arnold K, Kiefer F, Bordoli L, Kopp J, Podvinec M, Adams PD, Carter LG, Minor W, et al. The protein structure initiative structural genomics knowledgebase. Nucleic Acids Research. 37: D365-8. PMID 19010965 DOI: 10.1093/Nar/Gkn790  1
2009 Berman HM, Westbrook JD, Gabanyi MJ, Tao W, Shah R, Kouranov A, Schwede T, Arnold K, Kiefer F, Bordoli L, Kopp J, Podvinec M, Adams PD, Carter LG, Minor W, et al. The protein structure initiative structural genomics knowledgebase. Nucleic Acids Research. 37: D365-8. PMID 19010965 DOI: 10.1093/Nar/Gkn790  1
2008 Lawson CL, Dutta S, Westbrook JD, Henrick K, Berman HM. Representation of viruses in the remediated PDB archive Acta Crystallographica Section D: Biological Crystallography. 64: 874-882. PMID 18645236 DOI: 10.1107/S0907444908017393  1
2008 Dutta S, Burkhardt K, Swaminathan GJ, Kosada T, Henrick K, Nakamura H, Berman HM. Data deposition and annotation at the worldwide protein data bank. Methods in Molecular Biology (Clifton, N.J.). 426: 81-101. PMID 18542858 DOI: 10.1007/978-1-60327-058-8_5  1
2008 Dutta S, Burkhardt K, Swaminathan GJ, Kosada T, Henrick K, Nakamura H, Berman HM. Data deposition and annotation at the worldwide protein data bank. Methods in Molecular Biology (Clifton, N.J.). 426: 81-101. PMID 18542858 DOI: 10.1007/978-1-60327-058-8_5  1
2008 Markley JL, Ulrich EL, Berman HM, Henrick K, Nakamura H, Akutsu H. BioMagResBank (BMRB) as a partner in the Worldwide Protein Data Bank (wwPDB): New policies affecting biomolecular NMR depositions Journal of Biomolecular Nmr. 40: 153-155. PMID 18288446 DOI: 10.1007/S10858-008-9221-Y  1
2008 Richardson JS, Schneider B, Murray LW, Kapral GJ, Immormino RM, Headd JJ, Richardson DC, Ham D, Hershkovits E, Williams LD, Keating KS, Pyle AM, Micallef D, Westbrook J, Berman HM, et al. RNA backbone: consensus all-angle conformers and modular string nomenclature (an RNA Ontology Consortium contribution). Rna (New York, N.Y.). 14: 465-81. PMID 18192612 DOI: 10.1261/Rna.657708  1
2008 Richardson JS, Schneider B, Murray LW, Kapral GJ, Immormino RM, Headd JJ, Richardson DC, Ham D, Hershkovits E, Williams LD, Keating KS, Pyle AM, Micallef D, Westbrook J, Berman HM, et al. RNA backbone: consensus all-angle conformers and modular string nomenclature (an RNA Ontology Consortium contribution). Rna (New York, N.Y.). 14: 465-81. PMID 18192612 DOI: 10.1261/Rna.657708  1
2008 Berman HM. Harnessing Knowledge from Structural Genomics Structure. 16: 16-18. PMID 18184578 DOI: 10.1016/J.Str.2007.12.003  1
2008 Henrick K, Feng Z, Bluhm WF, Dimitropoulos D, Doreleijers JF, Dutta S, Flippen-Anderson JL, Ionides J, Kamada C, Krissinel E, Lawson CL, Markley JL, Nakamura H, Newman R, Shimizu Y, ... ... Berman HM, et al. Remediation of the protein data bank archive. Nucleic Acids Research. 36: D426-33. PMID 18073189 DOI: 10.1093/Nar/Gkm937  1
2008 Henrick K, Feng Z, Bluhm WF, Dimitropoulos D, Doreleijers JF, Dutta S, Flippen-Anderson JL, Ionides J, Kamada C, Krissinel E, Lawson CL, Markley JL, Nakamura H, Newman R, Shimizu Y, ... ... Berman HM, et al. Remediation of the protein data bank archive. Nucleic Acids Research. 36: D426-33. PMID 18073189 DOI: 10.1093/Nar/Gkm937  1
2007 Berman HM. The Protein Data Bank: A historical perspective Acta Crystallographica Section a: Foundations of Crystallography. 64: 88-95. PMID 18156675 DOI: 10.1107/S0108767307035623  1
2007 Berman HM, Henrick K, Nakamura H, Markley J, Bourne PE, Westbrook J. Realism about PDB [1] Nature Biotechnology. 25: 845-846. PMID 17687352 DOI: 10.1038/Nbt0807-845  1
2007 Berman H, Henrick K, Nakamura H, Markley JL. The worldwide Protein Data Bank (wwPDB): ensuring a single, uniform archive of PDB data. Nucleic Acids Research. 35: D301-3. PMID 17142228 DOI: 10.1093/Nar/Gkl971  1
2007 Berman HM, Henrick K, Nakamura H, Markley J. Reply to: Building meaningful models of glycoproteins [2] Nature Structural and Molecular Biology. 14: 354-355. DOI: 10.1038/Nsmb0507-354B  1
2006 Berman HM, Burley SK, Chiu W, Sali A, Adzhubei A, Bourne PE, Bryant SH, Dunbrack RL, Fidelis K, Frank J, Godzik A, Henrick K, Joachimiak A, Heymann B, Jones D, et al. Outcome of a Workshop on Archiving Structural Models of Biological Macromolecules Structure. 14: 1211-1217. PMID 16955948 DOI: 10.1016/J.Str.2006.06.005  1
2006 Bella J, Liu J, Kramer R, Brodsky B, Berman HM. Conformational Effects of Gly-X-Gly Interruptions in the Collagen Triple Helix Journal of Molecular Biology. 362: 298-311. PMID 16919298 DOI: 10.1016/J.Jmb.2006.07.014  1
2006 Leontis NB, Altman RB, Berman HM, Brenner SE, Brown JW, Engelke DR, Harvey SC, Holbrook SR, Jossinet F, Lewis SE, Major F, Mathews DH, Richardson JS, Williamson JR, Westhof E. The RNA Ontology Consortium: an open invitation to the RNA community. Rna (New York, N.Y.). 12: 533-41. PMID 16484377 DOI: 10.1261/Rna.2343206  1
2006 Leontis NB, Altman RB, Berman HM, Brenner SE, Brown JW, Engelke DR, Harvey SC, Holbrook SR, Jossinet F, Lewis SE, Major F, Mathews DH, Richardson JS, Williamson JR, Westhof E. The RNA Ontology Consortium: an open invitation to the RNA community. Rna (New York, N.Y.). 12: 533-41. PMID 16484377 DOI: 10.1261/Rna.2343206  1
2006 Napoli AA, Lawson CL, Ebright RH, Berman HM. Indirect readout of DNA sequence at the primary-kink site in the CAP-DNA complex: Recognition of pyrimidine-purine and purine-purine steps Journal of Molecular Biology. 357: 173-183. PMID 16427082 DOI: 10.1016/J.Jmb.2005.12.051  1
2006 Kouranov A, Xie L, de la Cruz J, Chen L, Westbrook J, Bourne PE, Berman HM. The RCSB PDB information portal for structural genomics. Nucleic Acids Research.. 34: D302-305. PMID 16381872 DOI: 10.1093/Nar/Gkj120  1
2006 Berman HM, Henrick K, Nakamura H, Arnold E. Berman, Henrick, Nakamura & Arnold respond [2] Nature Structural and Molecular Biology. 13: 185. DOI: 10.1038/Nsmb0306-185  1
2006 Schneider B, Berman HM. Basics of nucleic acid structure Computational Studies of Rna and Dna. 1-44. DOI: 10.1007/978-1-4020-4851-3_1  1
2006 Schneider B, Berman HM. Basics of nucleic acid structure Computational Studies of Rna and Dna. 1-44. DOI: 10.1007/978-1-4020-4851-3_1  1
2006 Bourne PE, Bluhm WF, Deshpande N, Zhang Q, Berman HM, Flippen-Anderson JL. The research collaboratory for structural bioinformatics protein data bank Comprehensive Medicinal Chemistry Ii. 3: 373-388.  1
2006 Berman HM, Dreyfuss RC. Reflections on the science and law of structural biology, genomics, and drug development Ucla Law Review. 53: 871-908.  1
2005 Dutta S, Berman HM. Large macromolecular complexes in the protein data bank: A status report Structure. 13: 381-388. PMID 15766539 DOI: 10.1016/J.Str.2005.01.008  1
2005 McLaughlin WA, Kulp DW, De La Cruz J, Lu XJ, Lawson CL, Berman HM. A structure-based method for identifying DNA-binding proteins and their sites of DNA-interaction Journal of Structural and Functional Genomics. 5: 255-265. PMID 15704013 DOI: 10.1007/S10969-005-4902-1  1
2005 Berman HM, Ten Eyck LF, Goodsell DS, Haste NM, Kornev A, Taylor SS. The cAMP binding domain: An ancient signaling module Proceedings of the National Academy of Sciences of the United States of America. 102: 45-50. PMID 15618393 DOI: 10.1073/Pnas.0408579102  1
2005 Deshpande N, Addess KJ, Bluhm WF, Merino-Ott JC, Townsend-Merino W, Zhang Q, Knezevich C, Xie L, Chen L, Feng Z, Green RK, Flippen-Anderson JL, Westbrook J, Berman HM, Bourne PE. The RCSB Protein Databa Bank: A redesigned query system and relational database based on the mmCIF schema Nucleic Acids Research. 33: D233-D237. PMID 15608185 DOI: 10.1093/Nar/Gki057  1
2005 Westbrook J, Ito N, Nakamura H, Henrick K, Berman HM. PDBML: The representation of archival macromolecular structure data in XML Bioinformatics. 21: 988-992. PMID 15509603 DOI: 10.1093/Bioinformatics/Bti082  1
2005 Berman HM. Helen M. Berman responds [2] Nature Structural and Molecular Biology. 12: 634. DOI: 10.1038/Nsmb0805-634B  1
2004 Yang H, Guranovic V, Dutta S, Feng Z, Berman HM, Westbrook JD. Automated and accurate deposition of structures solved by X-ray diffraction to the Protein Data Bank Acta Crystallographica Section D: Biological Crystallography. 60: 1833-1839. PMID 15388930 DOI: 10.1107/S0907444904019419  1
2004 Berman HM, Westbrook JD. The impact of structural genomics on the Protein Data Bank American Journal of Pharmacogenomics. 4: 247-252. PMID 15287818 DOI: 10.2165/00129785-200404040-00004  1
2004 Lawson CL, Benoff B, Berger T, Berman HM, Carey J. E. coli trp repressor forms a domain-swapped array in aqueous alcohol Structure. 12: 1099-1108. PMID 15274929 DOI: 10.1016/J.Str.2004.03.019  1
2004 Bourne PE, Westbrook J, Berman HM. The Protein Data Bank and lessons in data management. Briefings in Bioinformatics. 5: 23-30. PMID 15153303 DOI: 10.1093/Bib/5.1.23  1
2004 Chen L, Oughtred R, Berman HM, Westbrook J. TargetDB: A target registration database for structural genomics projects Bioinformatics. 20: 2860-2862. PMID 15130928 DOI: 10.1093/Bioinformatics/Bth300  1
2004 Lawson CL, Swigon D, Murakami KS, Darst SA, Berman HM, Ebright RH. Catabolite activator protein: DNA binding and transcription activation. Current Opinion in Structural Biology. 14: 10-20. PMID 15102444 DOI: 10.1016/J.Sbi.2004.01.012  1
2004 Lawson CL, Swigon D, Murakami KS, Darst SA, Berman HM, Ebright RH. Catabolite activator protein: DNA binding and transcription activation. Current Opinion in Structural Biology. 14: 10-20. PMID 15102444 DOI: 10.1016/J.Sbi.2004.01.012  1
2004 Feng Z, Chen L, Maddula H, Akcan O, Oughtred R, Berman HM, Westbrook J. Ligand Depot: A data warehouse for ligands bound to macromolecules Bioinformatics. 20: 2153-2155. PMID 15059838 DOI: 10.1093/Bioinformatics/Bth214  1
2004 Schneider B, Morávek Z, Berman HM. RNA conformational classes Nucleic Acids Research. 32: 1666-1677. PMID 15016910 DOI: 10.1093/Nar/Gkh333  1
2004 Bourne PE, Addess KJ, Bluhm WF, Chen L, Deshpande N, Feng Z, Fleri W, Green R, Merino-Ott JC, Townsend-Merino W, Weissig H, Westbrook J, Berman HM. The distribution and query systems of the RCSB Protein Data Bank Nucleic Acids Research. 32: D223-D225. PMID 14681399 DOI: 10.1093/Nar/Gkh096  1
2003 Westbrook J, Feng Z, Burkhardt K, Berman HM. Validation of Protein Structures for Protein Data Bank Methods in Enzymology. 374: 370-385. PMID 14696382 DOI: 10.1016/S0076-6879(03)74017-8  1
2003 Jones S, Shanahan HP, Berman HM, Thornton JM. Using electrostatic potentials to predict DNA-binding sites on DNA-binding proteins. Nucleic Acids Research. 31: 7189-98. PMID 14654694 DOI: 10.1093/Nar/Gkg922  1
2003 Jones S, Shanahan HP, Berman HM, Thornton JM. Using electrostatic potentials to predict DNA-binding sites on DNA-binding proteins. Nucleic Acids Research. 31: 7189-98. PMID 14654694 DOI: 10.1093/Nar/Gkg922  1
2003 Berman HM, Westbrook J. The need for dictionaries, ontologies, and controlled vocabularies Omics a Journal of Integrative Biology. 7: 9-10. PMID 12831545 DOI: 10.1089/153623103322006481  1
2003 McLaughlin WA, Berman HM. Statistical models for discerning protein structures containing the DNA-binding helix-turn-helix motif Journal of Molecular Biology. 330: 43-55. PMID 12818201 DOI: 10.1016/S0022-2836(03)00532-1  1
2003 Berman HM, Westbrook J, Feng Z, Iype L, Schneider B, Zardecki C. The nucleic acid database. Methods of Biochemical Analysis. 44: 199-216. PMID 12688301 DOI: 10.1107/97809553602060000897  1
2003 Neidle S, Schneider B, Berman HM. Fundamentals of DNA and RNA structure. Methods of Biochemical Analysis. 44: 41-73. PMID 12647381 DOI: 10.1002/0471721204.Ch3  1
2003 Westbrook J, Feng Z, Chen L, Yang H, Berman HM. The Protein Data Bank and structural genomics Nucleic Acids Research. 31: 489-491. PMID 12520059 DOI: 10.1093/Nar/Gkg068  1
2002 Benoff B, Yang H, Lawson CL, Parkinson G, Liu J, Blatter E, Ebright YW, Berman HM, Ebright RH. Structural basis of transcription activation: The CAP-αCTD-DNA complex Science. 297: 1562-1566. PMID 12202833 DOI: 10.1126/Science.1076376  1
2002 Berman HM, Battistuz T, Bhat TN, Bluhm WF, Bourne PE, Burkhardt K, Feng Z, Gilliland GL, Iype L, Jain S, Fagan P, Marvin J, Padilla D, Ravichandran V, Schneider B, et al. The Protein Data Bank. Acta Crystallographica. Section D, Biological Crystallography. 58: 899-907. PMID 12037327 DOI: 10.1107/S0907444902003451  1
2002 Berman HM, Westbrook J, Feng Z, Iype L, Schneider B, Zardecki C. The Nucleic Acid Database. Acta Crystallographica. Section D, Biological Crystallography. 58: 889-98. PMID 12037326 DOI: 10.1107/S0907444902003487  1
2002 Westbrook J, Feng Z, Jain S, Bhat TN, Thanki N, Ravichandran V, Gilliland GL, Bluhm W, Weissig H, Greer DS, Bourne PE, Berman HM. The protein data bank: Unifying the archive Nucleic Acids Research. 30: 245-248. PMID 11752306 DOI: 10.1093/Nar/30.1.245  1
2002 Berman HM, Goodsell DS, Bourne PE. Protein Structures: From Famine to Feast American Scientist. 90: 350-359. DOI: 10.1511/2002.27.785  1
2001 Chen S, Vojtechovsky J, Parkinson GN, Ebright RH, Berman HM. Indirect readout of DNA sequence at the primary-kink site in the CAP-DNA Complex: Alteration of DNA binding specificity through alteration of DNA kinking Journal of Molecular Biology. 314: 75-82. PMID 11724533 DOI: 10.1006/Jmbi.2001.5090  1
2001 Chen S, Gunasekera A, Zhang X, Kunkel TA, Ebright RH, Berman HM. Indirect readout of DNA sequence at the primary-kink site in the CAP-DNA complex: DNA binding specificity based on energetics of dna kinking Journal of Molecular Biology. 314: 63-74. PMID 11724532 DOI: 10.1006/Jmbi.2001.5089  1
2001 Olson WK, Bansal M, Burley SK, Dickerson RE, Gerstein M, Harvey SC, Heinemann U, Lu XJ, Neidle S, Shakked Z, Sklenar H, Suzuki M, Tung CS, Westhof E, Wolberger C, ... Berman HM, et al. A standard reference frame for the description of nucleic acid base-pair geometry. Journal of Molecular Biology. 313: 229-37. PMID 11601858 DOI: 10.1006/Jmbi.2001.4987  1
2001 Kramer RZ, Bella J, Brodsky B, Berman HM. The crystal and molecular structure of a collagen-like peptide with a biologically relevant sequence. Journal of Molecular Biology. 311: 131-47. PMID 11469863 DOI: 10.1006/Jmbi.2001.4849  1
2001 Das U, Chen S, Fuxreiter M, Vaguine AA, Richelle J, Berman HM, Wodak SJ. Checking nucleic acid crystal structures. Acta Crystallographica. Section D, Biological Crystallography. 57: 813-28. PMID 11375501 DOI: 10.1107/S0907444901003936  1
2001 Jones S, Daley DT, Luscombe NM, Berman HM, Thornton JM. Protein-RNA interactions: a structural analysis. Nucleic Acids Research. 29: 943-54. PMID 11160927 DOI: 10.1093/Nar/29.4.943  1
2001 Bhat TN, Bourne P, Feng Z, Gilliland G, Jain S, Ravichandran V, Schneider B, Schneider K, Thanki N, Weissig H, Westbrook J, Berman HM. The PDB data uniformity project. Nucleic Acids Research. 29: 214-8. PMID 11125095 DOI: 10.1093/Nar/29.1.214  1
2000 Luscombe NM, Austin SE, Berman HM, Thornton JM. An overview of the structures of protein-DNA complexes. Genome Biology. 1: REVIEWS001. PMID 11104519 DOI: 10.1186/Gb-2000-1-1-Reviews001  1
2000 Berman HM, Bhat TN, Bourne PE, Feng Z, Gilliland G, Weissig H, Westbrook J. The Protein Data Bank and the challenge of structural genomics. Nature Structural Biology. 7: 957-9. PMID 11103999 DOI: 10.1038/80734  1
2000 Kramer RZ, Venugopal MG, Bella J, Mayville P, Brodsky B, Berman HM. Staggered molecular packing in crystals of a collagen-like peptide with a single charged pair. Journal of Molecular Biology. 301: 1191-205. PMID 10966815 DOI: 10.1006/Jmbi.2000.4017  1
2000 Bella J, Berman HM. Integrin-collagen complex: a metal-glutamate handshake. Structure (London, England : 1993). 8: R121-6. PMID 10873865 DOI: 10.1016/S0969-2126(00)00153-2  1
2000 Berman HM, Westbrook J, Feng Z, Gilliland G, Bhat TN, Weissig H, Shindyalov IN, Bourne PE. The Protein Data Bank. Nucleic Acids Research. 28: 235-42. PMID 10592235 DOI: 10.1093/Nar/28.1.235  1
1999 Kramer RZ, Bella J, Mayville P, Brodsky B, Berman HM. Sequence dependent conformational variations of collagen triple-helical structure. Nature Structural Biology. 6: 454-7. PMID 10331873 DOI: 10.1038/8259  1
1999 Jones S, van Heyningen P, Berman HM, Thornton JM. Protein-DNA interactions: A structural analysis. Journal of Molecular Biology. 287: 877-96. PMID 10222198 DOI: 10.1006/Jmbi.1999.2659  1
1999 Berman HM. The past and future of structure databases. Current Opinion in Biotechnology. 10: 76-80. PMID 10047508 DOI: 10.1016/S0958-1669(99)80014-7  1
1999 Clowney L, Westbrook JD, Berman HM. CIF applications. XI. A La Mode: A ligand and monomer object data environment. I. Automated construction of mmCIF monomer and ligand models Journal of Applied Crystallography. 32: 125-133. DOI: 10.1107/S0021889898005160  1
1998 Berman HM, Zardecki C, Westbrook J. The Nucleic Acid Database: A resource for nucleic acid science. Acta Crystallographica. Section D, Biological Crystallography. 54: 1095-104. PMID 10089485 DOI: 10.1107/S0907444998007926  1
1998 Jain SC, Shinde U, Li Y, Inouye M, Berman HM. The crystal structure of an autoprocessed Ser221Cys-subtilisin E-propeptide complex at 2.0 A resolution. Journal of Molecular Biology. 284: 137-44. PMID 9811547 DOI: 10.1006/Jmbi.1998.2161  1
1998 Schneider B, Patel K, Berman HM. Hydration of the phosphate group in double-helical DNA. Biophysical Journal. 75: 2422-34. PMID 9788937 DOI: 10.1016/S0006-3495(98)77686-6  1
1998 Woda J, Schneider B, Patel K, Mistry K, Berman HM. An analysis of the relationship between hydration and protein-DNA interactions. Biophysical Journal. 75: 2170-7. PMID 9788911 DOI: 10.1016/S0006-3495(98)77660-X  1
1998 Loewenstern DM, Berman HM, Hirsh H. Maximum A posteriori classification of DNA structure from sequence information. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 669-80. PMID 9697221  1
1998 Kramer RZ, Vitagliano L, Bella J, Berisio R, Mazzarella L, Brodsky B, Zagari A, Berman HM. X-ray crystallographic determination of a collagen-like peptide with the repeating sequence (Pro-Pro-Gly). Journal of Molecular Biology. 280: 623-38. PMID 9677293 DOI: 10.1006/Jmbi.1998.1881  1
1997 Schneider B, Neidle S, Berman HM. Conformations of the sugar-phosphate backbone in helical DNA crystal structures. Biopolymers. 42: 113-24. PMID 19350745 DOI: 10.1002/(Sici)1097-0282(199707)42:1<113::Aid-Bip10>3.0.Co;2-O  1
1997 Liu J, Lynch PA, Chien CY, Montelione GT, Krug RM, Berman HM. Crystal structure of the unique RNA-binding domain of the influenza virus NS1 protein. Nature Structural Biology. 4: 896-9. PMID 9360602 DOI: 10.1038/Nsb1197-896  1
1997 Berman HM. Crystal studies of B-DNA: The answers and the questions Biopolymers - Nucleic Acid Sciences Section. 44: 23-44. PMID 9097732 DOI: 10.1002/(Sici)1097-0282(1997)44:1<23::Aid-Bip3>3.0.Co;2-1  1
1997 Bourne PE, Berman HM, McMahon B, Watenpaugh KD, Westbrook JD, Fitzgerald PMD. Macromolecular crystallographic information file Methods in Enzymology. 277: 571-590. DOI: 10.1016/S0076-6879(97)77032-0  1
1996 Bella J, Berman HM. Crystallographic evidence for C(α)-H...O = C hydrogen bonds in a collagen triple helix Journal of Molecular Biology. 264: 734-742. PMID 8980682 DOI: 10.1006/Jmbi.1996.0673  1
1996 Martínez-Hackert E, Harlocker S, Inouye M, Berman HM, Stock AM. Crystallization, x-ray studies, and site-directed cysteine mutagenesis of the DNA-binding domain of OmpR Protein Science. 5: 1429-1433. PMID 8819176 DOI: 10.1002/Pro.5560050722  1
1996 Parkinson G, Wilson C, Gunasekera A, Ebright YW, Ebright RE, Berman HM. Structure of the CAP-DNA complex at 2.5 Å resolution: A complete picture of the protein-DNA interface Journal of Molecular Biology. 260: 395-408. PMID 8757802 DOI: 10.1006/Jmbi.1996.0409  1
1996 Bella J, Brodsky B, Berman HM. Disrupted collagen architecture in the crystal structure of a triple-helical peptide with a Gly → Ala substitution Connective Tissue Research. 35: 455-460. DOI: 10.3109/03008209609029218  1
1996 Gelbin A, Schneider B, Clowney L, Hsieh SH, Olson WK, Berman HM. Geometric parameters in nucleic acids: Sugar and phosphate constituents Journal of the American Chemical Society. 118: 519-529. DOI: 10.1021/Ja9528846  1
1996 Clowney L, Jain SC, Srinivasan AR, Westbrook J, Olson WK, Berman HM. Geometric parameters in nucleic acids: Nitrogenous bases Journal of the American Chemical Society. 118: 509-518. DOI: 10.1021/Ja952883D  1
1996 Berman HM, Gelbin A, Clowney L, Hsieh SH, Zardecki C, Westbrook J. The nucleic acid database: Present and future Journal of Research of the National Institute of Standards and Technology. 101: 243-257.  1
1996 Parkinson G, Vojtechovaky J, Clowney L, Brünger AT, Berman HM. New parameters for the refinement of nucleic acid-containing structures Acta Crystallographica Section D: Biological Crystallography. 52: 57-64.  1
1995 Sussman JL, Berman HM. New guidelines for deposition of nucleic acid structures Structure. 3: 1426. PMID 8747467 DOI: 10.1016/S0969-2126(01)00278-7  1
1995 Schneider B, Berman HM. Hydration of the DNA bases is local Biophysical Journal. 69: 2661-2669. PMID 8599672 DOI: 10.1016/S0006-3495(95)80136-0  1
1995 Bella J, Brodsky B, Berman HM. Hydration structure of a collagen peptide Structure. 3: 893-906. PMID 8535783 DOI: 10.1016/S0969-2126(01)00224-6  1
1995 Vojtechovsky J, Eaton MD, Gaffney B, Jones R, Berman HM. Structure of a new crystal form of a DNA dodecamer containing T.(O6Me)G base pairs. Biochemistry. 34: 16632-40. PMID 8527436 DOI: 10.1021/Bi00051A011  1
1995 Young MA, Ravishanker G, Beveridge DL, Berman HM. Analysis of local helix bending in crystal structures of DNA oligonucleotides and DNA-protein complexes. Biophysical Journal. 68: 2454-68. PMID 7647248 DOI: 10.1016/S0006-3495(95)80427-3  1
1995 Parkinson GN, Arvanitis GM, Lessinger L, Ginell SL, Jones R, Gaffney B, Berman HM. Crystal and molecular structure of a new Z-DNA crystal form: d[CGT(2-NH2-A)CG] and its platinated derivative Biochemistry. 34: 15487-15495. PMID 7492550 DOI: 10.2210/Pdb210D/Pdb  1
1995 Spink N, Nunn CM, Vojtechovsky J, Berman HM, Neidle S. Crystal structure of a DNA decamer showing a novel pseudo four-way helix-helix junction Proceedings of the National Academy of Sciences of the United States of America. 92: 10767-10771. PMID 7479880 DOI: 10.1073/Pnas.92.23.10767  1
1994 Parkinson GN, Wu Y, Fan P, Kohn J, Baum J, Berman HM. Crystal structure and NMR conformation of a cyclic pseudotetrapeptide containing urethane backbone linkages Biopolymers. 34: 403-414. PMID 8161712 DOI: 10.1002/Bip.360340312  1
1994 Berman HM. Crystal structure of a mispaired dodecamer, d(CGAGAATTC(O6Me)GCG)2, containing a carcinogenic O6-methylguanine Biochemistry. 33: 3487-3493. PMID 8142345 DOI: 10.1021/Bi00178A004  1
1994 Arvanitis GM, Gibson D, Emge TJ, Berman HM. Platinum(II) triamine complexes: cis-[PtCl(NH3)2(C10H13N5O5)]NO3.2H2O and [PtCl(C2H8N2)(C4H6N2)]NO3 Acta Crystallographica, Section C: Crystal Structure Communications. 50: Pt 8/-. PMID 7946149 DOI: 10.1107/S010827019301073X  1
1994 Bella J, Eaton M, Brodsky B, Berman HM. Crystal and molecular structure of a collagen-like peptide at 1.9 Å resolution Science. 266: 75-81. PMID 7695699 DOI: 10.1126/Science.7695699  1
1994 Berman HM. Hydration of DNA: take 2 Current Opinion in Structural Biology. 4: 345-350. DOI: 10.1016/S0959-440X(94)90102-3  1
1994 Gibson D, Arvanitis GM, Berman HM. Ternary Pt(II)-amino acid-nucleotide complexes: kinetics of formation Inorganica Chimica Acta. 218: 11-19. DOI: 10.1016/0020-1693(94)03797-3  1
1993 Camacho NP, Smith DR, Goldman A, Schneider B, Green D, Young PR, Berman HM. Structure of an interleukin-1β mutant with reduced bioactivity shows multiple subtle changes in conformation that affect protein-protein recognition Biochemistry. 32: 8749-8757. PMID 8364024 DOI: 10.1021/Bi00085A005  1
1993 Schneider B, Cohen DM, Schleifer L, Srinivasan AR, Olson WK, Berman HM. A systematic method for studying the spatial distribution of water molecules around nucleic acid bases. Biophysical Journal. 65: 2291-303. PMID 8312469 DOI: 10.1016/S0006-3495(93)81306-7  1
1992 Schneider B, Ginell SL, Berman HM. Low temperature structures of dCpG-proflavine: Conformational and hydration effects Biophysical Journal. 63: 1572-1578. PMID 1489914 DOI: 10.1016/S0006-3495(92)81755-1  1
1992 Berman HM, Sussman JL, Joshua-Tor L, Revich GG, Ripley LS. A structural model for sequence-specific proflavin-dna interactions during in vitro frameshift mutagenesis Journal of Biomolecular Structure and Dynamics. 10: 317-331. PMID 1466812 DOI: 10.1080/07391102.1992.10508650  1
1992 Schneider B, Cohen D, Berman HM. Hydration of DNA bases: Analysis of crystallographic data Biopolymers. 32: 725-750. PMID 1391627 DOI: 10.1002/Bip.360320703  1
1992 Schneider B, Ginell SL, Jones R, Gaffney B, Berman HM. Crystal and molecular structure of a DNA fragment containing a 2-aminoadenine modification: The relationship between conformation, packing, and hydration in Z-DNA hexamers Biochemistry. 31: 9622-9628. PMID 1390739 DOI: 10.1021/Bi00155A014  1
1992 Berman HM, Olson WK, Beveridge DL, Westbrook J, Gelbin A, Demeny T, Hsieh SH, Srinivasan AR, Schneider B. The nucleic acid database. A comprehensive relational database of three-dimensional structures of nucleic acids. Biophysical Journal. 63: 751-9. PMID 1384741 DOI: 10.1016/S0006-3495(92)81649-1  1
1990 Subramanian PS, Pitchumani S, Beveridge DL, Berman HM. A Monte Carlo simulation study of the aqueous hydration of r(GpC)2: comparison with crystallographic ordered water sites. Biopolymers. 29: 771-83. PMID 2383642 DOI: 10.1002/Bip.360290411  1
1990 Ginell SL, Kuzmich S, Jones RA, Berman HM. Crystal and molecular structure of a DNA duplex containing the carcinogenic lesion O6-methylguanine Biochemistry. 29: 10461-10465. PMID 2271657 DOI: 10.1021/Bi00498A005  1
1990 Swaminathan S, Beveridge DL, Berman HM. Molecular dynamics simulation of a deoxydinucleoside-drug intercalation complex: dCpG/proflavin Journal of Physical Chemistry. 94: 4660-4665. DOI: 10.1021/J100374A054  1
1988 Ginell S, Lessinger L, Berman HM. The crystal and molecular structure of the anticancer drug actinomycin D - Some explanations for its unusual properties Biopolymers. 27: 834-864. PMID 3382721 DOI: 10.1002/Bip.360270511  1
1988 Berman HM, Sowri A, Ginel S, Beveridge D. A systematic study of patterns of hydrationin nucleic acids:(i) guanine and cytosine Journal of Biomolecular Structure and Dynamics. 5: 1101-1110. PMID 3271499 DOI: 10.1080/07391102.1988.10506451  1
1988 Neidle S, Pearl LH, Herzyk P, Berman HM. A molecular model for proflavine-DNA intercalation Nucleic Acids Research. 16: 8999-9015. PMID 3174439 DOI: 10.1093/Nar/16.18.8999  1
1987 Afshar C, Berman HM, Sawzik P, Lessinger L, Lim BB, Hosmane RS. Structure of a rearrangement product: 1-methyl-3-(5-amino-1-benzylimidazol-4-yl)-1,2,4-triazole, C13H14N6 Journal of Crystallographic and Spectroscopic Research. 17: 533-543. DOI: 10.1007/Bf01180325  1
1986 Berman HM. How Eco RI recognizes and cuts DNA Science. 234: 1482-1483. PMID 3024319 DOI: 10.1126/Science.3024319  1
1986 Berman HM. Hydration of nucleic acid crystals Annals of the New York Academy of Sciences. 482: 166-178. PMID 2436516 DOI: 10.1111/J.1749-6632.1986.Tb20948.X  1
1986 Goldstein BM, Barton JK, Berman HM. Crystal and molecular structure of a chiral-specific DNA-binding agent: Tris(4,7-diphenyl-1,10-phenanthroline)ruthenium(II) Inorganic Chemistry. 25: 842-847.  1
1985 Goldstein BM, Takusagawa F, Berman HM, Srivastava PC, Robins RK. Structural studies of a new antitumor and antiviral agent: Selenazofurin and its a anomer Journal of the American Chemical Society. 107: 1394-1400. DOI: 10.1002/Chin.198529082  1
1984 Takusagawa F, Goldstein BM, Youngster S, Jones RA, Berman HM. Crystallization and preliminary X-ray study of a complex between d(ATGCAT) and actinomycin D Journal of Biological Chemistry. 259: 4714-4715. PMID 6715318  1
1983 Mezei M, Beveridge DL, Berman HM, Goodfellow JM, Finney JL, Neidle S. Monte Carlo studies on water in the dCpG/proflavin crystal hydrate. Journal of Biomolecular Structure & Dynamics. 1: 287-97. PMID 6400875 DOI: 10.1080/07391102.1983.10507440  1
1983 Neidle S, Berman HM. X-ray crystallographic studies of nucleic acids and nucleic acid-drug complexes Progress in Biophysics and Molecular Biology. 41: 43-66. PMID 6340165 DOI: 10.1016/0079-6107(83)90025-1  1
1983 Goldstein BM, Takusagawa F, Berman HM. Structural studies of a new antitumor agent: Tiazofurin and its inactive analogues Journal of the American Chemical Society. 105: 7416-7422. DOI: 10.1002/Chin.198412060  1
1982 Takusagawa F, Dabrow M, Neidle S, Berman HM. The structure of a pseudo intercalated complex between actinomycin and the DNA binding sequence d(GpC) Nature. 296: 466-469. PMID 7063043 DOI: 10.1038/296466A0  1
1982 Takusagawa F, Berman HM. Some new aspects of actinomycin D-nucleic acid binding Cold Spring Harbor Symposia On Quantitative Biology. 47: 315-321. PMID 6574848  1
1981 Srivastava PC, Robbins RK, Takusagawa F, Berman HM. Determination of the anomeric configuration of 2'-deoxy-D-ribonucleosides by 1H NMR and by crystallographic studies of a novel 2'-deoxy C-nucleoside Journal of Heterocyclic Chemistry. 18: 1659-1662. DOI: 10.1002/Jhet.5570180838  1
1980 Neidle S, Berman HM, Shieh HS. Highly structured water network in crystals of a deoxydinucleoside-drug complex Nature. 288: 129-133. PMID 7432511 DOI: 10.1038/288129A0  1
1980 Shieh HS, Berman HM, Dabrow M, Neidle S. The structure of drug-deoxydinucleoside phosphate complex; generalized conformational behavior of intercalation complexes with RNA and DNA fragments Nucleic Acids Research. 8: 85-98. PMID 7355129 DOI: 10.1093/Nar/8.1.85  1
1978 Berman HM, Marcu D, Narayanan P. Modified bases in tRNA: the structures of 5-carbamoylmethyl- and 5-carboxymethyl uridine. Nucleic Acids Research. 5: 893-903. PMID 643621 DOI: 10.1093/Nar/5.3.893  1
1976 Narayanan P, Berman HM, Rousseau R. Model compounds for protein nucleic acid interactions. 3. Synthesis and structure of a nucleoside dipeptide, N-(9-β-D-ribofuranosylpurin-6-yl)glycyl-L-alanine sesquihydrate Journal of the American Chemical Society. 98: 8472-8475. PMID 993531 DOI: 10.1021/Ja00442A026  1
1976 Westbrook EM, Sigler PB, Berman H, Glusker JP, Bunick G, Benson A, Talalay P. Characterization of a monoclinic crystal form of an enzyme of steroid metabolism, Δ5-3-ketosteroid isomerase Journal of Molecular Biology. 103: 665-667. PMID 940161 DOI: 10.1016/0022-2836(76)90225-4  1
1975 Narayanan P, Berman HM. A crystallographic determination of a chemical structure: 6-amino-10-(β-d-ribofuranosylamino)pyrimido-[5,4-d]pyrimidine, an example of an unusual d-ribose conformation Carbohydrate Research. 44: 169-180. PMID 1203903 DOI: 10.1016/S0008-6215(00)84161-0  1
1974 Meyer EF, Morimoto CN, Villarreal J, Berman HM, Carrell HL, Stodola RK, Koetzle TF, Andrews LC, Bernstein FC, Bernstein HJ, Villarreal J. CRYSNET, a crystallographic computing network with interactive graphics display. Federation Proceedings. 33: 2402-5. PMID 4435248  1
1973 Berman HM, Rousseau RJ, Mancuso RW, Kreishman GP, Robins RK. The synthesis of 4-amino-8-(β-d-ribofuranosyl)aminopyrimido[5,4-d]pyrimidine from a purine nucleoside: a novel rearrangement of the purine ring Tetrahedron Letters. 14: 3099-3101. DOI: 10.1016/S0040-4039(01)96329-4  1
1972 Sussman JL, Seeman NC, Kim SH, Berman HM. Crystal structure of a naturally occurring dinucleoside phoaphate: uridylyl 3',5'-adenosine phosphate model for RNA chain folding. Journal of Molecular Biology. 66: 403-21. PMID 5037021 DOI: 10.1016/0022-2836(72)90423-8  0.6
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