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Yon W. Ebright - Publications

Affiliations: 
1989- Rutgers University, New Brunswick, New Brunswick, NJ, United States 
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37 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Lin W, Das K, Degen D, Mazumder A, Duchi D, Wang D, Ebright YW, Ebright RY, Sineva E, Gigliotti M, Srivastava A, Mandal S, Jiang Y, Liu Y, Yin R, et al. Structural Basis of Transcription Inhibition by Fidaxomicin (Lipiarmycin A3). Molecular Cell. PMID 29606590 DOI: 10.1016/J.Molcel.2018.02.026  0.594
2017 Lin W, Mandal S, Degen D, Liu Y, Ebright YW, Li S, Feng Y, Zhang Y, Mandal S, Jiang Y, Liu S, Gigliotti M, Talaue M, Connell N, Das K, et al. Structural Basis of Mycobacterium tuberculosis Transcription and Transcription Inhibition. Molecular Cell. PMID 28392175 DOI: 10.1016/J.Molcel.2017.03.001  0.594
2015 Feng Y, Degen D, Wang X, Gigliotti M, Liu S, Zhang Y, Das D, Michalchuk T, Ebright YW, Talaue M, Connell N, Ebright RH. Structural Basis of Transcription Inhibition by CBR Hydroxamidines and CBR Pyrazoles. Structure (London, England : 1993). PMID 26190576 DOI: 10.1016/J.Str.2015.06.009  0.586
2015 Chakraborty A, Mazumder A, Lin M, Hasemeyer A, Xu Q, Wang D, Ebright YW, Ebright RH. Site-specific incorporation of probes into RNA polymerase by unnatural-amino-acid mutagenesis and Staudinger-Bertozzi ligation. Methods in Molecular Biology (Clifton, N.J.). 1276: 101-31. PMID 25665560 DOI: 10.1007/978-1-4939-2392-2_6  0.617
2015 Feng Y, Degen D, Wang X, Gigliotti M, Liu S, Zhang Y, Das D, Michalchuk T, Ebright YW, Talaue M, Connell N, Ebright RH. Structural Basis of Transcription Inhibition by CBR Hydroxamidines and CBR Pyrazoles Structure. DOI: 10.1016/j.str.2015.06.009  0.499
2014 Degen D, Feng Y, Zhang Y, Ebright KY, Ebright YW, Gigliotti M, Vahedian-Movahed H, Mandal S, Talaue M, Connell N, Arnold E, Fenical W, Ebright RH. Transcription inhibition by the depsipeptide antibiotic salinamide A. Elife. 3: e02451. PMID 24843001 DOI: 10.7554/Elife.02451  0.624
2014 Zhang Y, Degen D, Ho MX, Sineva E, Ebright KY, Ebright YW, Mekler V, Vahedian-Movahed H, Feng Y, Yin R, Tuske S, Irschik H, Jansen R, Maffioli S, Donadio S, et al. GE23077 binds to the RNA polymerase 'i' and 'i+1' sites and prevents the binding of initiating nucleotides. Elife. 3: e02450. PMID 24755292 DOI: 10.7554/Elife.02450  0.608
2012 Srivastava A, Degen D, Ebright YW, Ebright RH. Frequency, spectrum, and nonzero fitness costs of resistance to myxopyronin in Staphylococcus aureus. Antimicrobial Agents and Chemotherapy. 56: 6250-5. PMID 23006749 DOI: 10.1128/Aac.01060-12  0.547
2012 Chakraborty A, Wang D, Ebright YW, Korlann Y, Kortkhonjia E, Kim T, Chowdhury S, Wigneshweraraj S, Irschik H, Jansen R, Nixon BT, Knight J, Weiss S, Ebright RH. Opening and closing of the bacterial RNA polymerase clamp. Science (New York, N.Y.). 337: 591-5. PMID 22859489 DOI: 10.1126/Science.1218716  0.643
2011 Srivastava A, Talaue M, Liu S, Degen D, Ebright RY, Sineva E, Chakraborty A, Druzhinin SY, Chatterjee S, Mukhopadhyay J, Ebright YW, Zozula A, Shen J, Sengupta S, Niedfeldt RR, et al. New target for inhibition of bacterial RNA polymerase: 'switch region'. Current Opinion in Microbiology. 14: 532-43. PMID 21862392 DOI: 10.1016/J.Mib.2011.07.030  0.56
2011 Parkinson G, Wilson C, Gunasekera A, Ebright YW, Ebright RH, Berman HM. Erratum to “Structure of the CAP–DNA Complex at 2.5 Å Resolution: A Complete Picture of the Protein–DNA Interface” [J. Mol. Biol. 260/3 (1996) 395–408] Journal of Molecular Biology. 414: 163. DOI: 10.1016/J.Jmb.2011.10.002  0.509
2010 Chakraborty A, Wang D, Ebright YW, Ebright RH. Azide-specific labeling of biomolecules by Staudinger-Bertozzi ligation phosphine derivatives of fluorescent probes suitable for single-molecule fluorescence spectroscopy. Methods in Enzymology. 472: 19-30. PMID 20580957 DOI: 10.1016/S0076-6879(10)72018-8  0.538
2008 Kim Y, Ebright YW, Goodman AR, Reinberg D, Ebright RH. Nonradioactive, ultrasensitive site-specific protein-protein photocrosslinking: interactions of alpha-helix 2 of TATA-binding protein with general transcription factor TFIIA and transcriptional repressor NC2. Nucleic Acids Research. 36: 6143-54. PMID 18824481 DOI: 10.1093/Nar/Gkn612  0.586
2003 Mukhopadhyay J, Mekler V, Kortkhonjia E, Kapanidis AN, Ebright YW, Ebright RH. Fluorescence resonance energy transfer (FRET) in analysis of transcription-complex structure and function. Methods in Enzymology. 371: 144-59. PMID 14712697 DOI: 10.1016/S0076-6879(03)71010-6  0.639
2002 Benoff B, Yang H, Lawson CL, Parkinson G, Liu J, Blatter E, Ebright YW, Berman HM, Ebright RH. Structural basis of transcription activation: The CAP-αCTD-DNA complex Science. 297: 1562-1566. PMID 12202833 DOI: 10.1126/Science.1076376  0.687
2002 Mekler V, Kortkhonjia E, Mukhopadhyay J, Knight J, Revyakin A, Kapanidis AN, Niu W, Ebright YW, Levy R, Ebright RH. Structural organization of bacterial RNA polymerase holoenzyme and the RNA polymerase-promoter open complex. Cell. 108: 599-614. PMID 11893332 DOI: 10.1016/S0092-8674(02)00667-0  0.633
2001 Kapanidis AN, Ebright YW, Ebright RH. Site-specific incorporation of fluorescent probes into protein: Hexahistidine-tag-mediated fluorescent labeling with (Ni2+:Nitrilotriacetic Acid)n - Fluorochrome conjugates [20] Journal of the American Chemical Society. 123: 12123-12125. PMID 11724636 DOI: 10.1021/Ja017074A  0.561
2001 Kapanidis AN, Ebright YW, Ludescher RD, Chan S, Ebright RH. Mean DNA bend angle and distribution of DNA bend angles in the CAP-DNA complex in solution Journal of Molecular Biology. 312: 453-468. PMID 11563909 DOI: 10.1006/Jmbi.2001.4976  0.64
2001 Mukhopadhyay J, Kapanidis AN, Mekler V, Kortkhonjia E, Ebright YW, Ebright RH. Translocation of sigma(70) with RNA polymerase during transcription: fluorescence resonance energy transfer assay for movement relative to DNA. Cell. 106: 453-63. PMID 11525731 DOI: 10.1016/S0092-8674(01)00464-0  0.611
1997 Parkinson G, Wilson C, Gunasekera A, Ebright YW, Ebright RE, Berman HM. Structure of the CAP-DNA complex at 2.5 angstroms resolution: a complete picture of the protein-DNA interface. Journal of Molecular Biology. 260: 395-408. DOI: 10.2210/Pdb1J59/Pdb  0.499
1996 Lagrange T, Kim TK, Orphanides G, Ebright YW, Ebricht RH, Reinberg D. High-resolution mapping of nucleoprotein complexes by site-specific protein-DNA photocrosslinking: Organization of the human TBP-TFIIA-TFIIB-DNA quaternary complex Proceedings of the National Academy of Sciences of the United States of America. 93: 10620-10625. PMID 8855228 DOI: 10.1073/Pnas.93.20.10620  0.538
1996 Ebright YW, Chen Y, Kim Y, Ebright RH. S-[2-(4-azidosalicylamido)ethylthio]-2-thiopyridine: radioiodinatable, cleavable, photoactivatible cross-linking agent. Bioconjugate Chemistry. 7: 380-4. PMID 8816963 DOI: 10.1021/Bc9600168  0.56
1996 Parkinson G, Wilson C, Gunasekera A, Ebright YW, Ebright RE, Berman HM. Structure of the CAP-DNA complex at 2.5 Å resolution: A complete picture of the protein-DNA interface Journal of Molecular Biology. 260: 395-408. PMID 8757802 DOI: 10.1006/Jmbi.1996.0409  0.499
1994 Dong Q, Blatter EE, Ebright YW, Bister K, Ebright RH. Identification of amino acid- base contacts in the Myc- DNA complex by site-specific bromouracil mediated photocrosslinking Embo Journal. 13: 200-204. PMID 8306962 DOI: 10.1002/J.1460-2075.1994.Tb06249.X  0.672
1994 Pendergrast PS, Ebright YW, Ebright RH. High-specificity DNA cleavage agent: Design and application to kilobase and megabase DNA substrates Science. 265: 959-962. PMID 8052855 DOI: 10.1126/Science.8052855  0.658
1994 Chen Y, Ebright YW, Ebright RH. Identification of the target of a transcription activator protein by protein-protein photocrosslinking Science. 265: 90-92. PMID 8016656 DOI: 10.1126/Science.8016656  0.582
1994 Niu W, Zhou Y, Dong Q, Ebright YW, Ebright RH. Characterization of the activating region of Escherichia coli catabolite gene activator protein (CAP) I. Saturation and alanine-scanning mutagenesis Journal of Molecular Biology. 243: 595-602. PMID 7966284 DOI: 10.1016/0022-2836(94)90034-5  0.652
1994 Shang Z, Ebright YW, Iler N, Pendergrast PS, Echelard Y, McMahon AP, Ebright RH, Abate C. DNA affinity cleaving analysis of homeodomain-DNA interaction: identification of homeodomain consensus sites in genomic DNA. Proceedings of the National Academy of Sciences of the United States of America. 91: 118-22. PMID 7904065 DOI: 10.1073/Pnas.91.1.118  0.665
1993 Heyduk T, Lee JC, Ebright YW, Blatter EE, Zhou Y, Ebright RH. CAP interacts with RNA polymerase in solution in the absence of promoter DNA Nature. 364: 548-549. PMID 8393148 DOI: 10.1038/364548A0  0.673
1993 Ebright YW, Chen Y, Ludescher RD, Ebright RH. N-(Iodoacetyl)-p-phenylenediamine-EDTA: A reagent for high-efficiency incorporation of an EDTA-metal complex at a rationally selected site within a protein Bioconjugate Chemistry. 4: 219-225. PMID 8324012 DOI: 10.1021/Bc00021A006  0.671
1992 Zhang XP, Gunasekera A, Ebright YW, Ebright RH. Derivatives of CAP having no solvent-accessible cysteine residues, or having a unique solvent-accessible cysteine residue at amino acid 2 of the helix-turn-helix motif. Journal of Biomolecular Structure & Dynamics. 9: 463-73. PMID 1667734 DOI: 10.1080/07391102.1991.10507929  0.634
1992 Blatter EE, Ebright YW, Ebright RH. Identification of an amino acid-base contact in the GCN4-DNA complex by bromouracil-mediated photocrosslinking Nature. 359: 650-652. PMID 1406998 DOI: 10.1038/359650A0  0.691
1992 Shannon Pendergrast P, Chen Y, Ebright YW, Ebright RH. Determination of the orientation of a DNA binding motif in a protein-DNA complex by photocrosslinking Proceedings of the National Academy of Sciences of the United States of America. 89: 10287-10291. PMID 1332042 DOI: 10.1073/Pnas.89.21.10287  0.695
1992 Ebright YW, Chen Y, Shannon Pendergrast P, Ebright RH. Incorporation of an EDTA-Metal complex at a rationally selected site within a protein: Application to EDTA-Iron DNA affinity cleaving with catabolite gene activator protein (CAP) and Cro Biochemistry. 31: 10664-10670. PMID 1329953 DOI: 10.1021/Bi00159A004  0.691
1990 Gunasekera A, Ebright YW, Ebright RH. DNA-sequence recognition by CAP: Role of the adenine N6 atom of base pair 6 of the DNA site Nucleic Acids Research. 18: 6853-6856. PMID 2175880 DOI: 10.1093/Nar/18.23.6853  0.631
1990 Ebright RH, Ebright YW, Pendergrast PS, Gunasekera A. Conversion of a helix-turn-helix motif sequence-specific DNA binding protein into a site-specific DNA cleavage agent Proceedings of the National Academy of Sciences of the United States of America. 87: 2882-2886. PMID 2158096 DOI: 10.1073/Pnas.87.8.2882  0.683
1989 Ebright RH, Ebright YW, Gunasekera A. Consensus DNA site for the Escherichia coli catabolite gene activator protein (CAP): CAP exhibits a 450-fold higher affinity for the consensus DNA site than for the E.coli lac DNA site Nucleic Acids Research. 17: 10295-10305. PMID 2557589 DOI: 10.1093/Nar/17.24.10295  0.646
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