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Semin Lee - Publications

Affiliations: 
Ulsan National Institute of Science and Technology, Ulsan, South Korea 
Area:
Genomics, Bioinformatics, Computational Biology
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36 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Yang HW, Lee S, Berry BC, Yang D, Zheng S, Carroll RS, Park PJ, Johnson MD. A role for mutations in and other genes affecting ependymal cells in idiopathic normal pressure hydrocephalus. Proceedings of the National Academy of Sciences of the United States of America. 120: e2300681120. PMID 38100419 DOI: 10.1073/pnas.2300681120  0.476
2023 Hong YM, Lee J, Cho DH, Jeon JH, Kang J, Kim MG, Lee S, Kim JK. Predicting preterm birth using machine learning techniques in oral microbiome. Scientific Reports. 13: 21105. PMID 38036587 DOI: 10.1038/s41598-023-48466-x  0.493
2023 Jang J, Kim H, Park SS, Kim M, Min YK, Jeong HO, Kim S, Hwang T, Choi DW, Kim HJ, Song S, Kim DO, Lee S, Lee CH, Lee JW. Single-cell RNA Sequencing Reveals Novel Cellular Factors for Response to Immunosuppressive Therapy in Aplastic Anemia. Hemasphere. 7: e977. PMID 37908861 DOI: 10.1097/HS9.0000000000000977  0.732
2023 Kim JY, Park S, Cho EY, Lee JE, Jung HH, Chae BJ, Kim SW, Nam SJ, Cho SY, Park YH, Ahn JS, Lee S, Im YH. Genomic characteristics of triple negative apocrine carcinoma: a comparison to triple negative breast cancer. Experimental & Molecular Medicine. PMID 37394589 DOI: 10.1038/s12276-023-01030-z  0.737
2023 Shin U, Choi Y, Ko HS, Myung K, Lee S, Cheon CK, Lee Y. A heterozygous mutation in UBE2H in a patient with developmental delay leads to an aberrant brain development in zebrafish. Human Genomics. 17: 44. PMID 37208785 DOI: 10.1186/s40246-023-00491-7  0.739
2023 Lee YJ, Shin KJ, Jang HJ, Ryu JS, Lee CY, Yoon JH, Seo JK, Park S, Lee S, Je AR, Huh YH, Kong SY, Kwon T, Suh PG, Chae YC. GPR143 controls ESCRT-dependent exosome biogenesis and promotes cancer metastasis. Developmental Cell. PMID 36800996 DOI: 10.1016/j.devcel.2023.01.006  0.728
2022 Jeong HO, Lee H, Kim H, Jang J, Kim S, Hwang T, Choi DW, Kim HS, Lee N, Lee YM, Park S, Jung HA, Sun JM, Ahn JS, Ahn MJ, ... ... Lee S, ... ... Lee SH, et al. Cellular plasticity and immune microenvironment of malignant pleural effusion are associated with EGFR-TKI resistance in non-small-cell lung carcinoma. Iscience. 25: 105358. PMID 36339256 DOI: 10.1016/j.isci.2022.105358  0.732
2022 Yoon M, Lee HK, Park EY, Kim JH, Lee JH, Kim YS, Kim HJ, Kim H, Yoo CW, Lee S, Hong EK, Kim TH, Kim TS, Seo SS, Kang S, ... ... Lee S, et al. Randomized multicenter phase II trial of prophylactic irradiation of para-aortic lymph nodes in advanced cervical cancer according to tumor hypoxia: Korean Radiation Oncology Group (KROG 07-01) study. International Journal of Cancer. PMID 35751421 DOI: 10.1002/ijc.34190  0.709
2022 Ju MK, Lee JR, Choi Y, Park SY, Sul HJ, Chung HJ, An S, Lee S, Jung E, Kim B, Choi BY, Kim BJ, Kim HS, Lim H, Kang HS, et al. PWWP2B promotes DNA end resection and homologous recombination. Embo Reports. e53492. PMID 35582821 DOI: 10.15252/embr.202153492  0.74
2021 Lee E, Park S, Um S, Kim S, Lee J, Jang J, Jeong HO, Shin J, Kang J, Lee S, Jeong T. Microbiome of Saliva and Plaque in Children According to Age and Dental Caries Experience. Diagnostics (Basel, Switzerland). 11. PMID 34441259 DOI: 10.3390/diagnostics11081324  0.722
2021 Yang HW, Lee S, Yang D, Dai H, Zhang Y, Han L, Zhao S, Zhang S, Ma Y, Johnson MF, Rattray AK, Johnson TA, Wang G, Zheng S, Carroll RS, et al. Deletions in CWH43 cause idiopathic normal pressure hydrocephalus. Embo Molecular Medicine. e13249. PMID 33459505 DOI: 10.15252/emmm.202013249  0.467
2020 Kim JY, Jeong HO, Heo DS, Keam B, Moon KC, Kwak C, Jang J, Kim S, Kim JI, Lee S, Lee SH. Treatment strategy for papillary renal cell carcinoma type 2: a case series of seven patients treated based on next generation sequencing data. Annals of Translational Medicine. 8: 1389. PMID 33313134 DOI: 10.21037/atm-20-3466  0.684
2020 Kim EH, Kim S, Kim HJ, Jeong HO, Lee J, Jang J, Joo JY, Shin Y, Kang J, Park AK, Lee JY, Lee S. Prediction of Chronic Periodontitis Severity Using Machine Learning Models Based On Salivary Bacterial Copy Number. Frontiers in Cellular and Infection Microbiology. 10: 571515. PMID 33304856 DOI: 10.3389/fcimb.2020.571515  0.725
2020 Cheon CK, Lee YJ, Yoo S, Lee JH, Lee JE, Kim HJ, Choi IJ, Choi Y, Lee S, Yoon JY. Delineation of the genetic and clinical spectrum, including candidate genes, of monogenic diabetes: a multicenter study in South Korea. Journal of Pediatric Endocrinology & Metabolism : Jpem. PMID 33031055 DOI: 10.1515/jpem-2020-0336  0.729
2020 Jeon S, Bhak Y, Choi Y, Jeon Y, Kim S, Jang J, Jang J, Blazyte A, Kim C, Kim Y, Shim J, Kim N, Kim YJ, Park SG, Kim J, ... ... Lee S, et al. Korean Genome Project: 1094 Korean personal genomes with clinical information. Science Advances. 6: eaaz7835. PMID 32766443 DOI: 10.1126/Sciadv.Aaz7835  0.721
2019 Zhang Y, Yang L, Kucherlapati M, Hadjipanayis A, Pantazi A, Bristow CA, Lee EA, Mahadeshwar HS, Tang J, Zhang J, Seth S, Lee S, Ren X, Song X, Sun H, et al. Global impact of somatic structural variation on the DNA methylome of human cancers. Genome Biology. 20: 209. PMID 31610796 DOI: 10.1186/S13059-019-1818-9  0.605
2019 Yang L, Wang S, Lee JJ, Lee S, Lee E, Shinbrot E, Wheeler DA, Kucherlapati R, Park PJ. An enhanced genetic model of colorectal cancer progression history. Genome Biology. 20: 168. PMID 31416464 DOI: 10.1186/S13059-019-1782-4  0.608
2018 Zhang Y, Yang L, Kucherlapati M, Chen F, Hadjipanayis A, Pantazi A, Bristow CA, Lee EA, Mahadeshwar HS, Tang J, Zhang J, Seth S, Lee S, Ren X, Song X, et al. A Pan-Cancer Compendium of Genes Deregulated by Somatic Genomic Rearrangement across More Than 1,400 Cases. Cell Reports. 24: 515-527. PMID 29996110 DOI: 10.1016/J.Celrep.2018.06.025  0.612
2018 Fan J, Lee HO, Lee S, Ryu DE, Lee S, Xue C, Kim SJ, Kim K, Barkas N, Park PJ, Park WY, Kharchenko PV. Linking transcriptional and genetic tumor heterogeneity through allele analysis of single-cell RNA-seq data. Genome Research. PMID 29898899 DOI: 10.1101/Gr.228080.117  0.506
2017 Zhang Y, Kwok-Shing Ng P, Kucherlapati M, Chen F, Liu Y, Tsang YH, de Velasco G, Jeong KJ, Akbani R, Hadjipanayis A, Pantazi A, Bristow CA, Lee E, Mahadeshwar HS, Tang J, ... ... Lee S, et al. A Pan-Cancer Proteogenomic Atlas of PI3K/AKT/mTOR Pathway Alterations. Cancer Cell. PMID 28528867 DOI: 10.1016/J.Ccell.2017.04.013  0.611
2016 Xi R, Lee S, Xia Y, Kim TM, Park PJ. Copy number analysis of whole-genome data using BIC-seq2 and its application to detection of cancer susceptibility variants. Nucleic Acids Research. PMID 27260798 DOI: 10.1093/Nar/Gkw491  0.515
2015 De Los Angeles A, Ferrari F, Fujiwara Y, Mathieu R, Lee S, Lee S, Tu HC, Ross S, Chou S, Nguyen M, Wu Z, Theunissen TW, Powell BE, Imsoonthornruksa S, Chen J, et al. Corrigendum: Failure to replicate the STAP cell phenomenon. Nature. PMID 26675720 DOI: 10.1038/Nature16479  0.394
2015 Lodato MA, Woodworth MB, Lee S, Evrony GD, Mehta BK, Karger A, Lee S, Chittenden TW, D'Gama AM, Cai X, Luquette LJ, Lee E, Park PJ, Walsh CA. Somatic mutation in single human neurons tracks developmental and transcriptional history. Science (New York, N.Y.). 350: 94-8. PMID 26430121 DOI: 10.1126/Science.Aab1785  0.558
2015 De Los Angeles A, Ferrari F, Fujiwara Y, Mathieu R, Lee S, Lee S, Tu HC, Ross S, Chou S, Nguyen M, Wu Z, Theunissen TW, Powell BE, Imsoonthornruksa S, Chen J, et al. Failure to replicate the STAP cell phenomenon. Nature. 525: E6-9. PMID 26399835 DOI: 10.1038/Nature15513  0.394
2015 Nam JY, Kim NK, Kim SC, Joung JG, Xi R, Lee S, Park PJ, Park WY. Evaluation of somatic copy number estimation tools for whole-exome sequencing data. Briefings in Bioinformatics. PMID 26210357 DOI: 10.1093/Bib/Bbv055  0.494
2015 Brat DJ, Verhaak RG, Aldape KD, Yung WK, Salama SR, Cooper LA, Rheinbay E, Miller CR, Vitucci M, Morozova O, Robertson AG, Noushmehr H, Laird PW, Cherniack AD, ... ... Lee S, et al. Comprehensive, Integrative Genomic Analysis of Diffuse Lower-Grade Gliomas. The New England Journal of Medicine. 372: 2481-98. PMID 26061751 DOI: 10.1056/Nejmoa1402121  0.422
2015 Kapanidou M, Lee S, Bolanos-Garcia VM. BubR1 kinase: protection against aneuploidy and premature aging. Trends in Molecular Medicine. 21: 364-72. PMID 25964054 DOI: 10.1016/j.molmed.2015.04.003  0.611
2014 Lee S, Bolanos-Garcia VM. The dynamics of signal amplification by macromolecular assemblies for the control of chromosome segregation. Frontiers in Physiology. 5: 368. PMID 25324779 DOI: 10.3389/fphys.2014.00368  0.605
2014 Parfenov M, Pedamallu CS, Gehlenborg N, Freeman SS, Danilova L, Bristow CA, Lee S, Hadjipanayis AG, Ivanova EV, Wilkerson MD, Protopopov A, Yang L, Seth S, Song X, Tang J, et al. Characterization of HPV and host genome interactions in primary head and neck cancers. Proceedings of the National Academy of Sciences of the United States of America. 111: 15544-9. PMID 25313082 DOI: 10.1073/Pnas.1416074111  0.462
2012 Xi R, Lee S, Park PJ. A survey of copy-number variation detection tools based on high-throughput sequencing data. Current Protocols in Human Genetics / Editorial Board, Jonathan L. Haines ... [Et Al.]. Unit7.19. PMID 23074071 DOI: 10.1002/0471142905.Hg0719S75  0.477
2012 Lee S, Thebault P, Freschi L, Beaufils S, Blundell TL, Landry CR, Bolanos-Garcia VM, Elowe S. Characterization of spindle checkpoint kinase Mps1 reveals domain with functional and structural similarities to tetratricopeptide repeat motifs of Bub1 and BubR1 checkpoint kinases. The Journal of Biological Chemistry. 287: 5988-6001. PMID 22187426 DOI: 10.1074/Jbc.M111.307355  0.667
2009 Lee S, Brown A, Pitt WR, Higueruelo AP, Gong S, Bickerton GR, Schreyer A, Tanramluk D, Baylay A, Blundell TL. Structural interactomics: informatics approaches to aid the interpretation of genetic variation and the development of novel therapeutics. Molecular Biosystems. 5: 1456-72. PMID 19763326 DOI: 10.1039/B906402H  0.726
2009 Gong S, Worth CL, Bickerton GR, Lee S, Tanramluk D, Blundell TL. Structural and functional restraints in the evolution of protein families and superfamilies. Biochemical Society Transactions. 37: 727-33. PMID 19614584 DOI: 10.1042/Bst0370727  0.743
2009 Lee S, Blundell TL. Ulla: a program for calculating environment-specific amino acid substitution tables. Bioinformatics (Oxford, England). 25: 1976-7. PMID 19417059 DOI: 10.1093/bioinformatics/btp300  0.351
2009 Lee S, Blundell TL. BIPA: a database for protein-nucleic acid interaction in 3D structures. Bioinformatics (Oxford, England). 25: 1559-60. PMID 19357098 DOI: 10.1093/bioinformatics/btp243  0.388
2007 Worth CL, Bickerton GR, Schreyer A, Forman JR, Cheng TM, Lee S, Gong S, Burke DF, Blundell TL. A structural bioinformatics approach to the analysis of nonsynonymous single nucleotide polymorphisms (nsSNPs) and their relation to disease. Journal of Bioinformatics and Computational Biology. 5: 1297-318. PMID 18172930 DOI: 10.1142/S0219720007003120  0.425
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