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Jacob Reimer - Publications

Affiliations: 
Neuroscience Baylor College of Medicine, Houston, TX 
Area:
Vision, Brain States, Attention
Website:
https://www.bcm.edu/research/labs-and-centers/faculty-labs/jacob-reimer-lab
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38 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Wang EY, Fahey PG, Ponder K, Ding Z, Chang A, Muhammad T, Patel S, Ding Z, Tran D, Fu J, Papadopoulos S, Franke K, Ecker AS, Reimer J, Pitkow X, et al. Towards a Foundation Model of the Mouse Visual Cortex. Biorxiv : the Preprint Server For Biology. PMID 36993435 DOI: 10.1101/2023.03.21.533548  0.814
2023 Ding Z, Fahey PG, Papadopoulos S, Wang E, Celii B, Papadopoulos C, Kunin AB, Chang A, Fu J, Ding Z, Patel S, Ponder K, Bae JA, Bodor AL, Brittain D, ... ... Reimer J, et al. Functional connectomics reveals general wiring rule in mouse visual cortex. Biorxiv : the Preprint Server For Biology. PMID 36993398 DOI: 10.1101/2023.03.13.531369  0.803
2023 Fu J, Shrinivasan S, Ponder K, Muhammad T, Ding Z, Wang E, Ding Z, Tran DT, Fahey PG, Papadopoulos S, Patel S, Reimer J, Ecker AS, Pitkow X, Haefner RM, et al. Pattern completion and disruption characterize contextual modulation in mouse visual cortex. Biorxiv : the Preprint Server For Biology. PMID 36993321 DOI: 10.1101/2023.03.13.532473  0.815
2023 Celii B, Papadopoulos S, Ding Z, Fahey PG, Wang E, Papadopoulos C, Kunin AB, Patel S, Bae JA, Bodor AL, Brittain D, Buchanan J, Bumbarger DJ, Castro MA, Cobos E, ... ... Reimer J, et al. NEURD: A mesh decomposition framework for automated proofreading and morphological analysis of neuronal EM reconstructions. Biorxiv : the Preprint Server For Biology. PMID 36993282 DOI: 10.1101/2023.03.14.532674  0.761
2023 Ding Z, Tran DT, Ponder K, Cobos E, Ding Z, Fahey PG, Wang E, Muhammad T, Fu J, Cadena SA, Papadopoulos S, Patel S, Franke K, Reimer J, Sinz FH, et al. Bipartite invariance in mouse primary visual cortex. Biorxiv : the Preprint Server For Biology. PMID 36993218 DOI: 10.1101/2023.03.15.532836  0.822
2023 Schneider-Mizell CM, Bodor A, Brittain D, Buchanan J, Bumbarger DJ, Elabbady L, Kapner D, Kinn S, Mahalingam G, Seshamani S, Suckow S, Takeno M, Torres R, Yin W, Dorkenwald S, ... ... Reimer J, et al. Cell-type-specific inhibitory circuitry from a connectomic census of mouse visual cortex. Biorxiv : the Preprint Server For Biology. PMID 36747710 DOI: 10.1101/2023.01.23.525290  0.799
2022 Dorkenwald S, Turner NL, Macrina T, Lee K, Lu R, Wu J, Bodor AL, Bleckert AA, Brittain D, Kemnitz N, Silversmith WM, Ih D, Zung J, Zlateski A, Tartavull I, ... ... Reimer J, et al. Binary and analog variation of synapses between cortical pyramidal neurons. Elife. 11. PMID 36382887 DOI: 10.7554/eLife.76120  0.634
2022 Shen S, Jiang X, Scala F, Fu J, Fahey P, Kobak D, Tan Z, Zhou N, Reimer J, Sinz F, Tolias AS. Distinct organization of two cortico-cortical feedback pathways. Nature Communications. 13: 6389. PMID 36302912 DOI: 10.1038/s41467-022-33883-9  0.801
2022 Franke K, Willeke KF, Ponder K, Galdamez M, Zhou N, Muhammad T, Patel S, Froudarakis E, Reimer J, Sinz FH, Tolias AS. State-dependent pupil dilation rapidly shifts visual feature selectivity. Nature. PMID 36171291 DOI: 10.1038/s41586-022-05270-3  0.786
2022 Liu Z, Lu X, Villette V, Gou Y, Colbert KL, Lai S, Guan S, Land MA, Lee J, Assefa T, Zollinger DR, Korympidou MM, Vlasits AL, Pang MM, Su S, ... ... Reimer J, et al. Sustained deep-tissue voltage recording using a fast indicator evolved for two-photon microscopy. Cell. PMID 35985322 DOI: 10.1016/j.cell.2022.07.013  0.603
2022 Turner NL, Macrina T, Bae JA, Yang R, Wilson AM, Schneider-Mizell C, Lee K, Lu R, Wu J, Bodor AL, Bleckert AA, Brittain D, Froudarakis E, Dorkenwald S, Collman F, ... ... Reimer J, et al. Reconstruction of neocortex: Organelles, compartments, cells, circuits, and activity. Cell. PMID 35216674 DOI: 10.1016/j.cell.2022.01.023  0.662
2021 Schneider-Mizell CM, Bodor AL, Collman F, Brittain D, Bleckert A, Dorkenwald S, Turner NL, Macrina T, Lee K, Lu R, Wu J, Zhuang J, Nandi A, Hu B, Buchanan J, ... ... Reimer J, et al. Structure and function of axo-axonic inhibition. Elife. 10. PMID 34851292 DOI: 10.7554/eLife.73783  0.658
2020 Shemesh OA, Linghu C, Piatkevich KD, Goodwin D, Celiker OT, Gritton HJ, Romano MF, Gao R, Yu CJ, Tseng HA, Bensussen S, Narayan S, Yang CT, Freifeld L, Siciliano CA, ... ... Reimer J, et al. Precision Calcium Imaging of Dense Neural Populations via a Cell-Body-Targeted Calcium Indicator. Neuron. PMID 32592656 DOI: 10.1016/J.Neuron.2020.05.029  0.628
2019 Walker EY, Sinz FH, Cobos E, Muhammad T, Froudarakis E, Fahey PG, Ecker AS, Reimer J, Pitkow X, Tolias AS. Inception loops discover what excites neurons most using deep predictive models. Nature Neuroscience. PMID 31686023 DOI: 10.1038/S41593-019-0517-X  0.787
2019 Sinz FH, Pitkow X, Reimer J, Bethge M, Tolias AS. Engineering a Less Artificial Intelligence. Neuron. 103: 967-979. PMID 31557461 DOI: 10.1016/J.Neuron.2019.08.034  0.761
2019 Froudarakis E, Fahey PG, Reimer J, Smirnakis SM, Tehovnik EJ, Tolias AS. The Visual Cortex in Context. Annual Review of Vision Science. 5: 317-339. PMID 31525143 DOI: 10.1146/annurev-vision-091517-034407  0.636
2019 Egbert JR, Fahey PG, Reimer J, Owen CM, Evsikov AV, Nikolaev VO, Griesbeck O, Ray RS, Tolias AS, Jaffe LA. Follicle-stimulating hormone and luteinizing hormone increase Ca2+ in the granulosa cells of mouse ovarian follicles†. Biology of Reproduction. PMID 31087036 DOI: 10.1093/Biolre/Ioz085  0.552
2018 Wang H, Dewell RB, Ehrengruber MU, Segev E, Reimer J, Roukes ML, Gabbiani F. Optogenetic manipulation of medullary neurons in the locust optic lobe. Journal of Neurophysiology. PMID 30110231 DOI: 10.1152/Jn.00356.2018  0.379
2018 Berens P, Freeman J, Deneux T, Chenkov N, McColgan T, Speiser A, Macke JH, Turaga SC, Mineault P, Rupprecht P, Gerhard S, Friedrich RW, Friedrich J, Paninski L, Pachitariu M, ... ... Reimer J, et al. Community-based benchmarking improves spike rate inference from two-photon calcium imaging data. Plos Computational Biology. 14: e1006157. PMID 29782491 DOI: 10.1371/Journal.Pcbi.1006157  0.617
2017 Ouzounov DG, Wang T, Wang M, Feng DD, Horton NG, Cruz-Hernández JC, Cheng YT, Reimer J, Tolias AS, Nishimura N, Xu C. In vivo three-photon imaging of activity of GCaMP6-labeled neurons deep in intact mouse brain. Nature Methods. PMID 28218900 DOI: 10.1038/Nmeth.4183  0.657
2017 Segev E, Reimer J, Moreaux LC, Fowler TM, Chi D, Sacher WD, Lo M, Deisseroth K, Tolias AS, Faraon A, Roukes ML. Patterned photostimulation via visible-wavelength photonic probes for deep brain optogenetics. Neurophotonics. 4: 011002. PMID 27990451 DOI: 10.1117/1.Nph.4.1.011002  0.64
2017 Wang T, Ouzounov DG, Wang M, Feng D, Cruz-Hernandez JC, Reimer J, Tolias A, Nishimura N, Xu C. In vivo three-photon activity imaging of GCaMP6-labeled neurons in deep cortex and the hippocampus of the mouse brain Proceedings of Spie. 10069. DOI: 10.1117/12.2251220  0.631
2016 Reimer J, McGinley MJ, Liu Y, Rodenkirch C, Wang Q, McCormick DA, Tolias AS. Pupil fluctuations track rapid changes in adrenergic and cholinergic activity in cortex. Nature Communications. 7: 13289. PMID 27824036 DOI: 10.1038/Ncomms13289  0.64
2016 Jiang X, Shen S, Sinz F, Reimer J, Cadwell CR, Berens P, Ecker AS, Patel S, Denfield GH, Froudarakis E, Li S, Walker E, Tolias AS. Response to Comment on "Principles of connectivity among morphologically defined cell types in adult neocortex". Science (New York, N.Y.). 353: 1108. PMID 27609883 DOI: 10.1126/Science.Aaf6102  0.7
2016 Denfield GH, Fahey PG, Reimer J, Tolias AS. Investigating the Limits of Neurovascular Coupling. Neuron. 91: 954-6. PMID 27608758 DOI: 10.1016/J.Neuron.2016.08.026  0.796
2016 Theis L, Berens P, Froudarakis E, Reimer J, Román Rosón M, Baden T, Euler T, Tolias AS, Bethge M. Benchmarking Spike Rate Inference in Population Calcium Imaging. Neuron. 90: 471-82. PMID 27151639 DOI: 10.1016/J.Neuron.2016.04.014  0.615
2015 Cadwell CR, Palasantza A, Jiang X, Berens P, Deng Q, Yilmaz M, Reimer J, Shen S, Bethge M, Tolias KF, Sandberg R, Tolias AS. Electrophysiological, transcriptomic and morphologic profiling of single neurons using Patch-seq. Nature Biotechnology. PMID 26689543 DOI: 10.1038/Nbt.3445  0.787
2015 McGinley MJ, Vinck M, Reimer J, Batista-Brito R, Zagha E, Cadwell CR, Tolias AS, Cardin JA, McCormick DA. Waking State: Rapid Variations Modulate Neural and Behavioral Responses. Neuron. 87: 1143-61. PMID 26402600 DOI: 10.1016/J.Neuron.2015.09.012  0.797
2014 Reimer J, Froudarakis E, Cadwell CR, Yatsenko D, Denfield GH, Tolias AS. Pupil fluctuations track fast switching of cortical states during quiet wakefulness. Neuron. 84: 355-62. PMID 25374359 DOI: 10.1016/J.Neuron.2014.09.033  0.768
2012 Stevenson IH, London BM, Oby ER, Sachs NA, Reimer J, Englitz B, David SV, Shamma SA, Blanche TJ, Mizuseki K, Zandvakili A, Hatsopoulos NG, Miller LE, Kording KP. Functional connectivity and tuning curves in populations of simultaneously recorded neurons. Plos Computational Biology. 8: e1002775. PMID 23166484 DOI: 10.1371/Journal.Pcbi.1002775  0.66
2011 Stevenson IH, Cherian A, London BM, Sachs NA, Lindberg E, Reimer J, Slutzky MW, Hatsopoulos NG, Miller LE, Kording KP. Statistical assessment of the stability of neural movement representations. Journal of Neurophysiology. 106: 764-74. PMID 21613593 DOI: 10.1152/Jn.00626.2010  0.657
2010 Reimer J, Hatsopoulos NG. Periodicity and evoked responses in motor cortex. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 30: 11506-15. PMID 20739573 DOI: 10.1523/Jneurosci.5947-09.2010  0.63
2010 Saleh M, Reimer J, Penn R, Ojakangas CL, Hatsopoulos NG. Fast and slow oscillations in human primary motor cortex predict oncoming behaviorally relevant cues. Neuron. 65: 461-71. PMID 20188651 DOI: 10.1016/J.Neuron.2010.02.001  0.664
2009 Fagg AH, Hatsopoulos NG, London BM, Reimer J, Solla SA, Wang D, Miller LE. Toward a biomimetic, bidirectional, brain machine interface. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 2009: 3376-80. PMID 19963797 DOI: 10.1109/IEMBS.2009.5332819  0.566
2009 Reimer J, Hatsopoulos NG. The problem of parametric neural coding in the motor system. Advances in Experimental Medicine and Biology. 629: 243-59. PMID 19227503 DOI: 10.1007/978-0-387-77064-2_12  0.638
2008 Tkach D, Reimer J, Hatsopoulos NG. Observation-based learning for brain-machine interfaces. Current Opinion in Neurobiology. 18: 589-94. PMID 18838120 DOI: 10.1016/J.Conb.2008.09.016  0.811
2007 Tkach D, Reimer J, Hatsopoulos NG. Congruent activity during action and action observation in motor cortex. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 27: 13241-50. PMID 18045918 DOI: 10.1523/Jneurosci.2895-07.2007  0.786
2007 Fagg AH, Hatsopoulos NG, de Lafuente V, Moxon KA, Nemati S, Rebesco JM, Romo R, Solla SA, Reimer J, Tkach D, Pohlmeyer EA, Miller LE. Biomimetic brain machine interfaces for the control of movement. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 27: 11842-6. PMID 17978021 DOI: 10.1523/Jneurosci.3516-07.2007  0.787
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