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Johanna E. Kowalko, Ph.D. - Publications

Affiliations: 
Genetics Harvard University, Cambridge, MA, United States 
Area:
genetics, morphogenesis, limb, evolution
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29 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Manning AE, Grunwald H, Moran R, Rodriguez-Morales R, Powers AK, McGaugh S, Kowalko JE. Defining the Unseen: Population-Specific Markers for Blind Cavefish. Zebrafish. PMID 38354295 DOI: 10.1089/zeb.2023.0105  0.369
2023 Sifuentes-Romero I, Aviles AM, Carter JL, Chan-Pong A, Clarke A, Crotty P, Engstrom D, Meka P, Perez A, Perez R, Phelan C, Sharrard T, Smirnova MI, Wade AJ, Kowalko JE. Trait Loss in Evolution: What Cavefish Have Taught Us About Mechanisms Underlying Eye Regression. Integrative and Comparative Biology. PMID 37218721 DOI: 10.1093/icb/icad032  0.339
2023 Moran RL, Richards EJ, Ornelas-García CP, Gross JB, Donny A, Wiese J, Keene AC, Kowalko JE, Rohner N, McGaugh SE. Selection-driven trait loss in independently evolved cavefish populations. Nature Communications. 14: 2557. PMID 37137902 DOI: 10.1038/s41467-023-37909-8  0.685
2022 Rodriguez-Morales R, Gonzalez-Lerma P, Yuiska A, Han JH, Guerra Y, Crisostomo L, Keene AC, Duboue ER, Kowalko JE. Convergence on reduced aggression through shared behavioral traits in multiple populations of Astyanax mexicanus. Bmc Ecology and Evolution. 22: 116. PMID 36241984 DOI: 10.1186/s12862-022-02069-8  0.348
2022 Oliva C, Hinz NK, Robinson W, Barrett Thompson AM, Booth J, Crisostomo LM, Zanineli S, Tanner M, Lloyd E, O'Gorman M, McDole B, Paz A, Kozol R, Brown EB, Kowalko JE, et al. Characterizing the genetic basis of trait evolution in the Mexican cavefish. Evolution & Development. PMID 35924750 DOI: 10.1111/ede.12412  0.474
2022 Patch A, Paz A, Holt KJ, Duboué ER, Keene AC, Kowalko JE, Fily Y. Kinematic analysis of social interactions deconstructs the evolved loss of schooling behavior in cavefish. Plos One. 17: e0265894. PMID 35385509 DOI: 10.1371/journal.pone.0265894  0.32
2022 Moran RL, Jaggard JB, Roback EY, Kenzior A, Rohner N, Kowalko JE, Ornelas-García CP, McGaugh SE, Keene AC. Hybridization underlies localized trait evolution in cavefish. Iscience. 25: 103778. PMID 35146393 DOI: 10.1016/j.isci.2022.103778  0.707
2021 O'Gorman M, Thakur S, Imrie G, Moran RL, Choy S, Sifuentes-Romero I, Bilandžija H, Renner KJ, Duboué E, Rohner N, McGaugh SE, Keene AC, Kowalko JE. Pleiotropic function of the oca2 gene underlies the evolution of sleep loss and albinism in cavefish. Current Biology : Cb. PMID 34293332 DOI: 10.1016/j.cub.2021.06.077  0.404
2021 O'Gorman M, Thakur S, Imrie G, Moran RL, Choy S, Sifuentes-Romero I, Bilandžija H, Renner KJ, Duboué E, Rohner N, McGaugh SE, Keene AC, Kowalko JE. Pleiotropic function of the oca2 gene underlies the evolution of sleep loss and albinism in cavefish. Current Biology : Cb. PMID 34293332 DOI: 10.1016/j.cub.2021.06.077  0.69
2021 Mack KL, Jaggard JB, Persons JL, Roback EY, Passow CN, Stanhope BA, Ferrufino E, Tsuchiya D, Smith SE, Slaughter BD, Kowalko J, Rohner N, Keene AC, McGaugh SE. Repeated evolution of circadian clock dysregulation in cavefish populations. Plos Genetics. 17: e1009642. PMID 34252077 DOI: 10.1371/journal.pgen.1009642  0.653
2021 Warren WC, Boggs TE, Borowsky R, Carlson BM, Ferrufino E, Gross JB, Hillier L, Hu Z, Keene AC, Kenzior A, Kowalko JE, Tomlinson C, Kremitzki M, Lemieux ME, Graves-Lindsay T, et al. A chromosome-level genome of Astyanax mexicanus surface fish for comparing population-specific genetic differences contributing to trait evolution. Nature Communications. 12: 1447. PMID 33664263 DOI: 10.1038/s41467-021-21733-z  0.746
2020 Kowalko JE, Franz-Odendaal TA, Rohner N. Introduction to the special issue-cavefish-adaptation to the dark. Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. PMID 33258551 DOI: 10.1002/jez.b.23014  0.609
2020 Jaggard JB, Lloyd E, Yuiska A, Patch A, Fily Y, Kowalko JE, Appelbaum L, Duboue ER, Keene AC. Cavefish brain atlases reveal functional and anatomical convergence across independently evolved populations. Science Advances. 6. PMID 32938683 DOI: 10.1126/Sciadv.Aba3126  0.404
2020 Mammola S, Amorim IR, Bichuette ME, Borges PAV, Cheeptham N, Cooper SJB, Culver DC, Deharveng L, Eme D, Ferreira RL, Fišer C, Fišer Ž, Fong DW, Griebler C, Jeffery WR, ... ... Kowalko JE, et al. Fundamental research questions in subterranean biology. Biological Reviews of the Cambridge Philosophical Society. PMID 32841483 DOI: 10.1111/Brv.12642  0.699
2020 Paz A, McDole B, Kowalko JE, Duboue ER, Keene AC. Evolution of the acoustic startle response of Mexican cavefish. Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. PMID 32779370 DOI: 10.1002/Jez.B.22988  0.481
2020 Chin JSR, Loomis CL, Albert LT, Medina-Trenche S, Kowalko J, Keene AC, Duboué ER. Analysis of stress responses in Astyanax larvae reveals heterogeneity among different populations. Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. PMID 32767504 DOI: 10.1002/Jez.B.22987  0.301
2020 McGaugh SE, Kowalko JE, Duboué E, Lewis P, Franz-Odendaal TA, Rohner N, Gross JB, Keene AC. Dark world rises: The emergence of cavefish as a model for the study of evolution, development, behavior, and disease. Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. PMID 32638529 DOI: 10.1002/Jez.B.22978  0.71
2020 Sifuentes-Romero I, Ferrufino E, Thakur S, Laboissonniere LA, Solomon M, Smith CL, Keene AC, Trimarchi JM, Kowalko JE. Repeated evolution of eye loss in Mexican cavefish: Evidence of similar developmental mechanisms in independently evolved populations. Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. PMID 32614138 DOI: 10.1002/Jez.B.22977  0.479
2020 Kowalko J. Utilizing the blind cavefish Astyanax mexicanus to understand the genetic basis of behavioral evolution The Journal of Experimental Biology. 223. PMID 32034044 DOI: 10.1242/Jeb.208835  0.53
2020 Krishnan J, Persons JL, Peuß R, Hassan H, Kenzior A, Xiong S, Olsen L, Maldonado E, Kowalko JE, Rohner N. Comparative transcriptome analysis of wild and lab populations of Astyanax mexicanus uncovers differential effects of environment and morphotype on gene expression. Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. PMID 32017448 DOI: 10.1002/Jez.B.22933  0.716
2019 Stahl BA, Jaggard JB, Chin JSR, Kowalko JE, Keene AC, Duboué ER. Manipulation of Gene Function in Mexican Cavefish. Journal of Visualized Experiments : Jove. PMID 31058898 DOI: 10.3791/59093  0.508
2018 Tabin JA, Aspiras A, Martineau B, Riddle M, Kowalko J, Borowsky R, Rohner N, Tabin CJ. Temperature preference of cave and surface populations of Astyanax mexicanus. Developmental Biology. PMID 29704470 DOI: 10.1016/J.Ydbio.2018.04.017  0.712
2018 Klaassen H, Wang Y, Adamski K, Rohner N, Kowalko JE. CRISPR mutagenesis confirms the role of oca2 in melanin pigmentation in Astyanax mexicanus. Developmental Biology. PMID 29555241 DOI: 10.1016/J.Ydbio.2018.03.014  0.749
2016 Kowalko JE, Ma L, Jeffery WR. Genome Editing in Astyanax mexicanus Using Transcription Activator-like Effector Nucleases (TALENs). Journal of Visualized Experiments : Jove. PMID 27404092 DOI: 10.3791/54113  0.482
2015 Kuo TH, Kowalko JE, DiTommaso T, Nyambi M, Montoro DT, Essner JJ, Whited JL. TALEN-mediated gene editing of the thrombospondin-1 locus in axolotl. Regeneration (Oxford, England). 2: 37-43. PMID 27499866 DOI: 10.1002/reg2.29  0.604
2015 Ma L, Jeffery WR, Essner JJ, Kowalko JE. Genome editing using TALENs in blind Mexican Cavefish, Astyanax mexicanus. Plos One. 10: e0119370. PMID 25774757 DOI: 10.1371/Journal.Pone.0119370  0.498
2013 Rohner N, Jarosz DF, Kowalko JE, Yoshizawa M, Jeffery WR, Borowsky RL, Lindquist S, Tabin CJ. Cryptic variation in morphological evolution: HSP90 as a capacitor for loss of eyes in cavefish. Science (New York, N.Y.). 342: 1372-5. PMID 24337296 DOI: 10.1126/Science.1240276  0.706
2013 Kowalko JE, Rohner N, Linden TA, Rompani SB, Warren WC, Borowsky R, Tabin CJ, Jeffery WR, Yoshizawa M. Convergence in feeding posture occurs through different genetic loci in independently evolved cave populations of Astyanax mexicanus. Proceedings of the National Academy of Sciences of the United States of America. 110: 16933-8. PMID 24085851 DOI: 10.1073/Pnas.1317192110  0.756
2013 Kowalko JE, Rohner N, Rompani SB, Peterson BK, Linden TA, Yoshizawa M, Kay EH, Weber J, Hoekstra HE, Jeffery WR, Borowsky R, Tabin CJ. Loss of schooling behavior in cavefish through sight-dependent and sight-independent mechanisms. Current Biology : Cb. 23: 1874-83. PMID 24035545 DOI: 10.1016/J.Cub.2013.07.056  0.688
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