| Year |
Citation |
Score |
| 2023 |
Braun J, Neme R, Feng Y, Landweber LF, Jonoska N. SDRAP for annotating scrambled or rearranged genomes. Nar Genomics and Bioinformatics. 5: lqad096. PMID 37942284 DOI: 10.1093/nargab/lqad096 |
0.317 |
|
| 2022 |
Feng Y, Neme R, Beh LY, Chen X, Braun J, Lu MW, Landweber LF. Comparative genomics reveals insight into the evolutionary origin of massively scrambled genomes. Elife. 11. PMID 36421078 DOI: 10.7554/eLife.82979 |
0.307 |
|
| 2021 |
Feng Y, Landweber LF. Transposon debris in ciliate genomes. Plos Biology. 19: e3001354. PMID 34428213 DOI: 10.1371/journal.pbio.3001354 |
0.377 |
|
| 2021 |
Miller RV, Neme R, Clay DM, Pathmanathan JS, Lu MW, Yerlici VT, Khurana JS, Landweber LF. Transcribed germline-limited coding sequences in Oxytricha trifallax. G3 (Bethesda, Md.). PMID 33772542 DOI: 10.1093/g3journal/jkab092 |
0.385 |
|
| 2020 |
Feng Y, Beh LY, Chang WJ, Landweber LF. SIGAR: Inferring features of genome architecture and DNA rearrangements by split read mapping. Genome Biology and Evolution. PMID 32790832 DOI: 10.1093/gbe/evaa147 |
0.375 |
|
| 2019 |
Yerlici VT, Lu MW, Hoge CR, Miller RV, Neme R, Khurana JS, Bracht JR, Landweber LF. Programmed genome rearrangements in Oxytricha produce transcriptionally active extrachromosomal circular DNA. Nucleic Acids Research. PMID 31504770 DOI: 10.1093/Nar/Gkz725 |
0.4 |
|
| 2019 |
Beh LY, Debelouchina GT, Clay DM, Thompson RE, Lindblad KA, Hutton ER, Bracht JR, Sebra RP, Muir TW, Landweber LF. Identification of a DNA N6-Adenine Methyltransferase Complex and Its Impact on Chromatin Organization. Cell. PMID 31104845 DOI: 10.1016/J.Cell.2019.04.028 |
0.309 |
|
| 2016 |
Burns J, Kukushkin D, Chen X, Landweber LF, Saito M, Jonoska N. Recurring patterns among scrambled genes in the encrypted genome of the ciliate Oxytricha trifallax. Journal of Theoretical Biology. PMID 27593332 DOI: 10.1016/J.Jtbi.2016.08.038 |
0.387 |
|
| 2015 |
Schaap P, Barrantes I, Minx P, Sasaki N, Anderson RW, Bénard M, Biggar KK, Buchler NE, Bundschuh R, Chen X, Fronick C, Fulton L, Golderer G, Jahn N, Knoop V, ... Landweber LF, et al. The Physarum polycephalum Genome Reveals Extensive Use of Prokaryotic Two-component and Metazoan-type Tyrosine Kinase Signaling. Genome Biology and Evolution. PMID 26615215 DOI: 10.1093/Gbe/Evv237 |
0.374 |
|
| 2015 |
Burns J, Kukushkin D, Lindblad K, Chen X, Jonoska N, Landweber LF. : a database of ciliate genome rearrangements. Nucleic Acids Research. PMID 26586804 DOI: 10.1093/Nar/Gkv1190 |
0.308 |
|
| 2015 |
Chen X, Jung S, Beh LY, Eddy SR, Landweber LF. Combinatorial DNA rearrangement facilitates the origin of new genes in ciliates. Genome Biology and Evolution. PMID 26338187 DOI: 10.1093/Gbe/Evv172 |
0.339 |
|
| 2015 |
Beh LY, Müller MM, Muir TW, Kaplan N, Landweber LF. DNA-guided establishment of nucleosome patterns within coding regions of a eukaryotic genome. Genome Research. 25: 1727-38. PMID 26330564 DOI: 10.1101/Gr.188516.114 |
0.308 |
|
| 2014 |
Chen X, Bracht JR, Goldman AD, Dolzhenko E, Clay DM, Swart EC, Perlman DH, Doak TG, Stuart A, Amemiya CT, Sebra RP, Landweber LF. The architecture of a scrambled genome reveals massive levels of genomic rearrangement during development. Cell. 158: 1187-98. PMID 25171416 DOI: 10.1016/J.Cell.2014.07.034 |
0.337 |
|
| 2013 |
Vogt A, Goldman AD, Mochizuki K, Landweber LF. Transposon domestication versus mutualism in ciliate genome rearrangements. Plos Genetics. 9: e1003659. PMID 23935529 DOI: 10.1371/journal.pgen.1003659 |
0.341 |
|
| 2013 |
Swart EC, Bracht JR, Magrini V, Minx P, Chen X, Zhou Y, Khurana JS, Goldman AD, Nowacki M, Schotanus K, Jung S, Fulton RS, Ly A, McGrath S, Haub K, ... ... Landweber LF, et al. The Oxytricha trifallax macronuclear genome: a complex eukaryotic genome with 16,000 tiny chromosomes. Plos Biology. 11: e1001473. PMID 23382650 DOI: 10.1371/Journal.Pbio.1001473 |
0.301 |
|
| 2012 |
Fang W, Wang X, Bracht JR, Nowacki M, Landweber LF. Piwi-interacting RNAs protect DNA against loss during Oxytricha genome rearrangement. Cell. 151: 1243-55. PMID 23217708 DOI: 10.1016/J.Cell.2012.10.045 |
0.346 |
|
| 2012 |
Bracht JR, Perlman DH, Landweber LF. Cytosine methylation and hydroxymethylation mark DNA for elimination in Oxytricha trifallax. Genome Biology. 13: R99. PMID 23075511 DOI: 10.1186/gb-2012-13-10-r99 |
0.355 |
|
| 2012 |
Goldman AD, Landweber LF. Oxytricha as a modern analog of ancient genome evolution. Trends in Genetics : Tig. 28: 382-8. PMID 22622227 DOI: 10.1016/j.tig.2012.03.010 |
0.335 |
|
| 2011 |
Zhou Y, Wubneh H, Schwarz C, Landweber LF. A chimeric chromosome in the ciliate oxytricha resulting from duplication. Journal of Molecular Evolution. 73: 70-3. PMID 22037698 DOI: 10.1007/s00239-011-9464-1 |
0.332 |
|
| 2010 |
Nowacki M, Haye JE, Fang W, Vijayan V, Landweber LF. RNA-mediated epigenetic regulation of DNA copy number. Proceedings of the National Academy of Sciences of the United States of America. 107: 22140-4. PMID 21078984 DOI: 10.1073/Pnas.1012236107 |
0.326 |
|
| 2009 |
Nowacki M, Higgins BP, Maquilan GM, Swart EC, Doak TG, Landweber LF. A functional role for transposases in a large eukaryotic genome. Science (New York, N.Y.). 324: 935-8. PMID 19372392 DOI: 10.1126/Science.1170023 |
0.374 |
|
| 2008 |
Möllenbeck M, Zhou Y, Cavalcanti AR, Jönsson F, Higgins BP, Chang WJ, Juranek S, Doak TG, Rozenberg G, Lipps HJ, Landweber LF. The pathway to detangle a scrambled gene. Plos One. 3: e2330. PMID 18523559 DOI: 10.1371/Journal.Pone.0002330 |
0.395 |
|
| 2008 |
Nowacki M, Vijayan V, Zhou Y, Schotanus K, Doak TG, Landweber LF. RNA-mediated epigenetic programming of a genome-rearrangement pathway. Nature. 451: 153-8. PMID 18046331 DOI: 10.1038/Nature06452 |
0.391 |
|
| 2007 |
Angeleska A, Jonoska N, Saito M, Landweber LF. RNA-guided DNA assembly. Journal of Theoretical Biology. 248: 706-20. PMID 17669433 DOI: 10.1016/J.Jtbi.2007.06.007 |
0.372 |
|
| 2007 |
Chang WJ, Addis VM, Li AJ, Axelsson E, Ardell DH, Landweber LF. Intron Evolution and Information processing in the DNA polymerase alpha gene in spirotrichous ciliates: a hypothesis for interconversion between DNA and RNA deletion. Biology Direct. 2: 6. PMID 17270054 DOI: 10.1186/1745-6150-2-6 |
0.358 |
|
| 2006 |
Wong LC, Landweber LF. Evolution of programmed DNA rearrangements in a scrambled gene. Molecular Biology and Evolution. 23: 756-63. PMID 16431850 DOI: 10.1093/Molbev/Msj089 |
0.355 |
|
| 2005 |
Chang WJ, Bryson PD, Liang H, Shin MK, Landweber LF. The evolutionary origin of a complex scrambled gene. Proceedings of the National Academy of Sciences of the United States of America. 102: 15149-54. PMID 16217011 DOI: 10.1073/pnas.0507682102 |
0.332 |
|
| 2003 |
Ardell DH, Lozupone CA, Landweber LF. Polymorphism, recombination and alternative unscrambling in the DNA polymerase alpha gene of the ciliate Stylonychia lemnae (Alveolata; class Spirotrichea). Genetics. 165: 1761-77. PMID 14704164 |
0.309 |
|
| 2003 |
Doak TG, Cavalcanti AR, Stover NA, Dunn DM, Weiss R, Herrick G, Landweber LF. Sequencing the Oxytricha trifallax macronuclear genome: a pilot project. Trends in Genetics : Tig. 19: 603-7. PMID 14585610 DOI: 10.1016/J.Tig.2003.09.013 |
0.305 |
|
| 2002 |
Horton TL, Landweber LF. Rewriting the information in DNA: RNA editing in kinetoplastids and myxomycetes. Current Opinion in Microbiology. 5: 620-6. PMID 12457708 DOI: 10.1016/S1369-5274(02)00379-X |
0.306 |
|
| 2000 |
Faulhammer D, Lipton RJ, Landweber LF. Fidelity of enzymatic ligation for DNA computing. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 7: 839-48. PMID 11382365 DOI: 10.1089/10665270050514963 |
0.35 |
|
| 1999 |
Freeland SJ, Knight RD, Landweber LF. Do proteins predate DNA? Science (New York, N.Y.). 286: 690-2. PMID 10577226 DOI: 10.1126/Science.286.5440.690 |
0.3 |
|
| 1999 |
Landweber LF. Testing ancient RNA-protein interactions. Proceedings of the National Academy of Sciences of the United States of America. 96: 11067-8. PMID 10500126 DOI: 10.1073/pnas.96.20.11067 |
0.303 |
|
| 1993 |
Landweber LF, Kreitman M. Producing single-stranded DNA in polymerase chain reaction for direct genomic sequencing. Methods in Enzymology. 218: 17-26. PMID 8510531 DOI: 10.1016/0076-6879(93)18004-V |
0.522 |
|
| 1989 |
Kreitman M, Landweber LF. A strategy for producing single-stranded DNA in the polymerase chain reaction. A direct method for genomic sequencing. Gene Analysis Techniques. 6: 84-8. PMID 2503434 DOI: 10.1016/0735-0651(89)90021-6 |
0.518 |
|
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