| Year |
Citation |
Score |
| 2020 |
Madhani HD. Unbelievable but True: Epigenetics and Chromatin in Fungi. Trends in Genetics : Tig. PMID 33092902 DOI: 10.1016/j.tig.2020.09.016 |
0.361 |
|
| 2020 |
Dumesic PA, Stoddard CI, Catania S, Narlikar GJ, Madhani HD. ATP Hydrolysis by the SNF2 Domain of Dnmt5 Is Coupled to Both Specific Recognition and Modification of Hemimethylated DNA. Molecular Cell. PMID 32437639 DOI: 10.1016/J.Molcel.2020.04.029 |
0.713 |
|
| 2020 |
Catania S, Dumesic PA, Pimentel H, Nasif A, Stoddard CI, Burke JE, Diedrich JK, Cooke S, Shea T, Gienger E, Lintner R, Yates JR, Hajkova P, Narlikar GJ, Cuomo CA, ... ... Madhani HD, et al. Evolutionary Persistence of DNA Methylation for Millions of Years after Ancient Loss of a De Novo Methyltransferase. Cell. 180: 816. PMID 32084344 DOI: 10.1016/j.cell.2020.02.006 |
0.705 |
|
| 2020 |
Catania S, Dumesic PA, Pimentel H, Nasif A, Stoddard CI, Burke JE, Diedrich JK, Cook S, Shea T, Geinger E, Lintner R, Yates JR, Hajkova P, Narlikar GJ, Cuomo CA, ... ... Madhani HD, et al. Evolutionary Persistence of DNA Methylation for Millions of Years after Ancient Loss of a De Novo Methyltransferase. Cell. PMID 31955845 DOI: 10.1016/J.Cell.2019.12.012 |
0.735 |
|
| 2019 |
Burke JE, Longhurst AD, Natarajan P, Rao B, Liu J, Sales-Lee J, Mortensen Y, Moresco JJ, Diedrich JK, Yates JR, Madhani HD. A Non-Dicer RNase III and Four Other Novel Factors Required for RNAi-Mediated Transposon Suppression in the Human Pathogenic Yeast Cryptococcus neoformans. G3 (Bethesda, Md.). 9: 2235-2244. PMID 33877344 DOI: 10.1534/g3.119.400330 |
0.364 |
|
| 2019 |
Brimacombe CA, Burke JE, Parsa JY, Catania S, O'Meara TR, Witchley JN, Burrack LS, Madhani HD, Noble SM. A natural histone H2A variant lacking the Bub1 phosphorylation site and regulated depletion of centromeric histone CENP-A foster evolvability in Candida albicans. Plos Biology. 17: e3000331. PMID 31226107 DOI: 10.1371/Journal.Pbio.3000331 |
0.351 |
|
| 2019 |
Burke JE, Longhurst AD, Natarajan P, Rao B, Liu J, Sales-Lee J, Mortensen Y, Moresco JJ, Diedrich JK, Yates JR, Madhani HD. A Non-Dicer RNase III and Four Other Novel Factors Required for RNAi-Mediated Transposon Suppression in the Human Pathogenic Yeast . G3 (Bethesda, Md.). PMID 31092606 DOI: 10.1534/G3.119.400330 |
0.367 |
|
| 2018 |
Roth R, Madhani HD, Garcia JF. Total RNA Isolation and Quantification of Specific RNAs in Fission Yeast. Methods in Molecular Biology (Clifton, N.J.). 1721: 63-72. PMID 29423847 DOI: 10.1007/978-1-4939-7546-4_6 |
0.622 |
|
| 2017 |
Allshire RC, Madhani HD. Ten principles of heterochromatin formation and function. Nature Reviews. Molecular Cell Biology. PMID 29235574 DOI: 10.1038/Nrm.2017.119 |
0.354 |
|
| 2016 |
Clarke SC, Dumesic PA, Homer CM, O'Donoghue AJ, La Greca F, Pallova L, Majer P, Madhani HD, Craik CS. Integrated Activity and Genetic Profiling of Secreted Peptidases in Cryptococcus neoformans Reveals an Aspartyl Peptidase Required for Low pH Survival and Virulence. Plos Pathogens. 12: e1006051. PMID 27977806 DOI: 10.1371/Journal.Ppat.1006051 |
0.722 |
|
| 2016 |
Inada M, Nichols RJ, Parsa JY, Homer CM, Benn RA, Hoxie RS, Madhani HD, Shuman S, Schwer B, Pleiss JA. Phospho-site mutants of the RNA Polymerase II C-terminal domain alter subtelomeric gene expression and chromatin modification state in fission yeast. Nucleic Acids Research. PMID 27402158 DOI: 10.1093/Nar/Gkw603 |
0.363 |
|
| 2015 |
Dumesic PA, Rosenblad MA, Samuelsson T, Nguyen T, Moresco JJ, Yates JR, Madhani HD. Noncanoncial signal recognition particle RNAs in a major eukaryotic phylum revealed by purification of SRP from the human pathogen Cryptococcus neoformans. Nucleic Acids Research. PMID 26275773 DOI: 10.1093/Nar/Gkv819 |
0.715 |
|
| 2015 |
Garcia JF, Al-Sady B, Madhani HD. Intrinsic Toxicity of Unchecked Heterochromatin Spread Is Suppressed by Redundant Chromatin Boundary Functions in Schizosacchromyces pombe. G3 (Bethesda, Md.). 5: 1453-61. PMID 25957277 DOI: 10.1534/G3.115.018663 |
0.696 |
|
| 2015 |
Dumesic PA, Homer CM, Moresco JJ, Pack LR, Shanle EK, Coyle SM, Strahl BD, Fujimori DG, Yates JR, Madhani HD. Product binding enforces the genomic specificity of a yeast polycomb repressive complex. Cell. 160: 204-18. PMID 25533783 DOI: 10.1016/J.Cell.2014.11.039 |
0.769 |
|
| 2014 |
Dumesic PA, Madhani HD. Recognizing the enemy within: licensing RNA-guided genome defense. Trends in Biochemical Sciences. 39: 25-34. PMID 24280023 DOI: 10.1016/J.Tibs.2013.10.003 |
0.721 |
|
| 2013 |
Dumesic PA, Madhani HD. The spliceosome as a transposon sensor. Rna Biology. 10: 1653-60. PMID 24418889 DOI: 10.4161/Rna.26800 |
0.728 |
|
| 2013 |
Marina DB, Shankar S, Natarajan P, Finn KJ, Madhani HD. A conserved ncRNA-binding protein recruits silencing factors to heterochromatin through an RNAi-independent mechanism. Genes & Development. 27: 1851-6. PMID 24013500 DOI: 10.1101/Gad.226019.113 |
0.82 |
|
| 2013 |
Canzio D, Liao M, Naber N, Pate E, Larson A, Wu S, Marina DB, Garcia JF, Madhani HD, Cooke R, Schuck P, Cheng Y, Narlikar GJ. A conformational switch in HP1 releases auto-inhibition to drive heterochromatin assembly. Nature. 496: 377-81. PMID 23485968 DOI: 10.1038/Nature12032 |
0.809 |
|
| 2013 |
Dumesic PA, Natarajan P, Chen C, Drinnenberg IA, Schiller BJ, Thompson J, Moresco JJ, Yates JR, Bartel DP, Madhani HD. Stalled spliceosomes are a signal for RNAi-mediated genome defense. Cell. 152: 957-68. PMID 23415457 DOI: 10.1016/J.Cell.2013.01.046 |
0.745 |
|
| 2013 |
Canzio D, Liang M, Naber N, Larson A, Marina D, Garcia J, Madhani H, Cooke R, Schuck P, Cheng Y, Narlikar GJ. Abstract IA23: Functional and structural studies of HP1 heterochromatin Cancer Research. 73. DOI: 10.1158/1538-7445.Cec13-Ia23 |
0.807 |
|
| 2012 |
Xu M, Soloveychik M, Ranger M, Schertzberg M, Shah Z, Raisner R, Venkatasubrahmanyan S, Tsui K, Gebbia M, Hughes T, van Bakel H, Nislow C, Madhani HD, Meneghini MD. Timing of transcriptional quiescence during gametogenesis is controlled by global histone H3K4 demethylation. Developmental Cell. 23: 1059-71. PMID 23123093 DOI: 10.1016/J.Devcel.2012.10.005 |
0.806 |
|
| 2012 |
Rougemaille M, Braun S, Coyle S, Dumesic PA, Garcia JF, Isaac RS, Libri D, Narlikar GJ, Madhani HD. Ers1 links HP1 to RNAi. Proceedings of the National Academy of Sciences of the United States of America. 109: 11258-63. PMID 22733737 DOI: 10.1073/Pnas.1204947109 |
0.808 |
|
| 2012 |
Braun S, Madhani HD. Shaping the landscape: mechanistic consequences of ubiquitin modification of chromatin. Embo Reports. 13: 619-30. PMID 22688965 DOI: 10.1038/embor.2012.78 |
0.336 |
|
| 2011 |
Kiely CM, Marguerat S, Garcia JF, Madhani HD, Bähler J, Winston F. Spt6 is required for heterochromatic silencing in the fission yeast Schizosaccharomyces pombe. Molecular and Cellular Biology. 31: 4193-204. PMID 21844224 DOI: 10.1128/Mcb.05568-11 |
0.706 |
|
| 2011 |
Charles GM, Chen C, Shih SC, Collins SR, Beltrao P, Zhang X, Sharma T, Tan S, Burlingame AL, Krogan NJ, Madhani HD, Narlikar GJ. Site-specific acetylation mark on an essential chromatin-remodeling complex promotes resistance to replication stress. Proceedings of the National Academy of Sciences of the United States of America. 108: 10620-5. PMID 21673141 DOI: 10.1073/Pnas.1019735108 |
0.39 |
|
| 2011 |
Chun CD, Brown JC, Madhani HD. A major role for capsule-independent phagocytosis-inhibitory mechanisms in mammalian infection by Cryptococcus neoformans. Cell Host & Microbe. 9: 243-51. PMID 21402362 DOI: 10.1016/J.Chom.2011.02.003 |
0.807 |
|
| 2011 |
Braun S, Garcia JF, Rowley M, Rougemaille M, Shankar S, Madhani HD. The Cul4-Ddb1(Cdt)² ubiquitin ligase inhibits invasion of a boundary-associated antisilencing factor into heterochromatin. Cell. 144: 41-54. PMID 21215368 DOI: 10.1016/J.Cell.2010.11.051 |
0.66 |
|
| 2010 |
Chun CD, Madhani HD. Applying genetics and molecular biology to the study of the human pathogen Cryptococcus neoformans. Methods in Enzymology. 470: 797-831. PMID 20946836 DOI: 10.1016/S0076-6879(10)70033-1 |
0.773 |
|
| 2010 |
McCullagh E, Seshan A, El-Samad H, Madhani HD. Coordinate control of gene expression noise and interchromosomal interactions in a MAP kinase pathway. Nature Cell Biology. 12: 954-62. PMID 20852627 DOI: 10.1038/Ncb2097 |
0.605 |
|
| 2010 |
Chun CD, Madhani HD. Ctr2 links copper homeostasis to polysaccharide capsule formation and phagocytosis inhibition in the human fungal pathogen Cryptococcus neoformans. Plos One. 5. PMID 20824073 DOI: 10.1371/Journal.Pone.0012503 |
0.784 |
|
| 2010 |
Garcia JF, Dumesic PA, Hartley PD, El-Samad H, Madhani HD. Combinatorial, site-specific requirement for heterochromatic silencing factors in the elimination of nucleosome-free regions. Genes & Development. 24: 1758-71. PMID 20675407 DOI: 10.1101/Gad.1946410 |
0.811 |
|
| 2010 |
Bao MZ, Shock TR, Madhani HD. Multisite phosphorylation of the Saccharomyces cerevisiae filamentous growth regulator Tec1 is required for its recognition by the E3 ubiquitin ligase adaptor Cdc4 and its subsequent destruction in vivo. Eukaryotic Cell. 9: 31-6. PMID 19897738 DOI: 10.1128/Ec.00250-09 |
0.768 |
|
| 2009 |
Hwang WW, Madhani HD. Nonredundant requirement for multiple histone modifications for the early anaphase release of the mitotic exit regulator Cdc14 from nucleolar chromatin. Plos Genetics. 5: e1000588. PMID 19662160 DOI: 10.1371/Journal.Pgen.1000588 |
0.348 |
|
| 2009 |
Hartley PD, Madhani HD. Mechanisms that specify promoter nucleosome location and identity. Cell. 137: 445-58. PMID 19410542 DOI: 10.1016/J.Cell.2009.02.043 |
0.789 |
|
| 2009 |
Shock TR, Thompson J, Yates JR, Madhani HD. Hog1 mitogen-activated protein kinase (MAPK) interrupts signal transduction between the Kss1 MAPK and the Tec1 transcription factor to maintain pathway specificity. Eukaryotic Cell. 8: 606-16. PMID 19218425 DOI: 10.1128/Ec.00005-09 |
0.782 |
|
| 2008 |
Liu OW, Chun CD, Chow ED, Chen C, Madhani HD, Noble SM. Systematic genetic analysis of virulence in the human fungal pathogen Cryptococcus neoformans. Cell. 135: 174-88. PMID 18854164 DOI: 10.1016/J.Cell.2008.07.046 |
0.776 |
|
| 2008 |
Madhani HD, Francis NJ, Kingston RE, Kornberg RD, Moazed D, Narlikar GJ, Panning B, Struhl K. Epigenomics: a roadmap, but to where? Science (New York, N.Y.). 322: 43-4. PMID 18832628 DOI: 10.1126/Science.322.5898.43B |
0.316 |
|
| 2008 |
Raisner RM, Madhani HD. Genomewide screen for negative regulators of sirtuin activity in Saccharomyces cerevisiae reveals 40 loci and links to metabolism. Genetics. 179: 1933-44. PMID 18689887 DOI: 10.1534/Genetics.108.088443 |
0.804 |
|
| 2008 |
Raisner RM, Hartley PD, Meneghini MD, Bao MZ, Liu CL, Schreiber SL, Rando OJ, Madhani HD. Histone Variant H2A.Z Marks the 5′ Ends of Both Active and Inactive Genes in Euchromatin (DOI:10.1016/j.cell.2005.10.002) Cell. 134: 188. DOI: 10.1016/j.cell.2008.06.046 |
0.782 |
|
| 2007 |
Venkatasubrahmanyam S, Hwang WW, Meneghini MD, Tong AH, Madhani HD. Genome-wide, as opposed to local, antisilencing is mediated redundantly by the euchromatic factors Set1 and H2A.Z. Proceedings of the National Academy of Sciences of the United States of America. 104: 16609-14. PMID 17925448 DOI: 10.1073/Pnas.0700914104 |
0.829 |
|
| 2007 |
Chow ED, Liu OW, O'Brien S, Madhani HD. Exploration of whole-genome responses of the human AIDS-associated yeast pathogen Cryptococcus neoformans var grubii: nitric oxide stress and body temperature. Current Genetics. 52: 137-48. PMID 17661046 DOI: 10.1007/S00294-007-0147-9 |
0.792 |
|
| 2007 |
Cantin GT, Shock TR, Park SK, Madhani HD, Yates JR. Optimizing TiO2-based phosphopeptide enrichment for automated multidimensional liquid chromatography coupled to tandem mass spectrometry. Analytical Chemistry. 79: 4666-73. PMID 17523591 DOI: 10.1021/Ac0618730 |
0.736 |
|
| 2007 |
Liu OW, Kelly MJ, Chow ED, Madhani HD. Parallel beta-helix proteins required for accurate capsule polysaccharide synthesis and virulence in the yeast Cryptococcus neoformans. Eukaryotic Cell. 6: 630-40. PMID 17337638 DOI: 10.1128/Ec.00398-06 |
0.78 |
|
| 2007 |
Chun CD, Liu OW, Madhani HD. A link between virulence and homeostatic responses to hypoxia during infection by the human fungal pathogen Cryptococcus neoformans. Plos Pathogens. 3: e22. PMID 17319742 DOI: 10.1371/Journal.Ppat.0030022 |
0.773 |
|
| 2007 |
Tompa R, Madhani HD. Histone H3 lysine 36 methylation antagonizes silencing in Saccharomyces cerevisiae independently of the Rpd3S histone deacetylase complex. Genetics. 175: 585-93. PMID 17179083 DOI: 10.1534/Genetics.106.067751 |
0.801 |
|
| 2006 |
Raisner RM, Madhani HD. Patterning chromatin: form and function for H2A.Z variant nucleosomes. Current Opinion in Genetics & Development. 16: 119-24. PMID 16503125 DOI: 10.1016/J.Gde.2006.02.005 |
0.817 |
|
| 2006 |
Schwartz MA, Madhani HD. Control of MAPK signaling specificity by a conserved residue in the MEK-binding domain of the yeast scaffold protein Ste5. Current Genetics. 49: 351-63. PMID 16463042 DOI: 10.1007/S00294-006-0061-6 |
0.608 |
|
| 2005 |
Raisner RM, Hartley PD, Meneghini MD, Bao MZ, Liu CL, Schreiber SL, Rando OJ, Madhani HD. Histone variant H2A.Z marks the 5' ends of both active and inactive genes in euchromatin. Cell. 123: 233-48. PMID 16239142 DOI: 10.1016/J.Cell.2005.10.002 |
0.8 |
|
| 2004 |
Bao MZ, Schwartz MA, Cantin GT, Yates JR, Madhani HD. Pheromone-dependent destruction of the Tec1 transcription factor is required for MAP kinase signaling specificity in yeast. Cell. 119: 991-1000. PMID 15620357 DOI: 10.1016/J.Cell.2004.11.052 |
0.756 |
|
| 2004 |
Schwartz MA, Madhani HD. Principles of MAP kinase signaling specificity in Saccharomyces cerevisiae. Annual Review of Genetics. 38: 725-48. PMID 15568991 DOI: 10.1146/Annurev.Genet.39.073003.112634 |
0.564 |
|
| 2004 |
Kobor MS, Venkatasubrahmanyam S, Meneghini MD, Gin JW, Jennings JL, Link AJ, Madhani HD, Rine J. A protein complex containing the conserved Swi2/Snf2-related ATPase Swr1p deposits histone variant H2A.Z into euchromatin. Plos Biology. 2: E131. PMID 15045029 DOI: 10.1371/Journal.Pbio.0020131 |
0.814 |
|
| 2003 |
Meneghini MD, Wu M, Madhani HD. Conserved histone variant H2A.Z protects euchromatin from the ectopic spread of silent heterochromatin. Cell. 112: 725-36. PMID 12628191 DOI: 10.1016/S0092-8674(03)00123-5 |
0.385 |
|
| 2003 |
Hwang WW, Venkatasubrahmanyam S, Ianculescu AG, Tong A, Boone C, Madhani HD. A conserved RING finger protein required for histone H2B monoubiquitination and cell size control. Molecular Cell. 11: 261-6. PMID 12535538 DOI: 10.1016/S1097-2765(02)00826-2 |
0.809 |
|
| 2002 |
Brugnera E, Haney L, Grimsley C, Lu M, Walk SF, Tosello-Trampont AC, Macara IG, Madhani H, Fink GR, Ravichandran KS. Unconventional Rac-GEF activity is mediated through the Dock180-ELMO complex. Nature Cell Biology. 4: 574-82. PMID 12134158 DOI: 10.1038/Ncb824 |
0.371 |
|
| 1999 |
Madhani HD, Galitski T, Lander ES, Fink GR. Effectors of a developmental mitogen-activated protein kinase cascade revealed by expression signatures of signaling mutants. Proceedings of the National Academy of Sciences of the United States of America. 96: 12530-5. PMID 10535956 DOI: 10.1073/Pnas.96.22.12530 |
0.317 |
|
| 1999 |
Rupp S, Summers E, Lo HJ, Madhani H, Fink G. MAP kinase and cAMP filamentation signaling pathways converge on the unusually large promoter of the yeast FLO11 gene Embo Journal. 18: 1257-1269. PMID 10064592 DOI: 10.1093/Emboj/18.5.1257 |
0.447 |
|
| 1999 |
Robertson L, Madhani H. Fungi take shape: Fungal Morphogenesis, by David Moore Trends in Cell Biology. 9: 374. DOI: 10.1016/S0962-8924(99)01546-9 |
0.342 |
|
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