Peter W H Holland - Publications

Affiliations: 
University of Oxford, Oxford, United Kingdom 
Area:
Evolution, development, genomics, homeobox

73 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Marlétaz F, Firbas PN, Maeso I, Tena JJ, Bogdanovic O, Perry M, Wyatt CDR, de la Calle-Mustienes E, Bertrand S, Burguera D, Acemel RD, van Heeringen SJ, Naranjo S, Herrera-Ubeda C, Skvortsova K, ... ... Holland PWH, et al. Amphioxus functional genomics and the origins of vertebrate gene regulation. Nature. PMID 30464347 DOI: 10.1038/s41586-018-0734-6  0.52
2018 Paps J, Holland PWH. Reconstruction of the ancestral metazoan genome reveals an increase in genomic novelty. Nature Communications. 9: 1730. PMID 29712911 DOI: 10.1038/s41467-018-04136-5  0.64
2018 Royall AH, Maeso I, Dunwell TL, Holland PWH. Mouse Obox and Crxos modulate preimplantation transcriptional profiles revealing similarity between paralogous mouse and human homeobox genes. Evodevo. 9: 2. PMID 29423137 DOI: 10.1186/s13227-018-0091-4  0.52
2017 Dunwell TL, Paps J, Holland PWH. Novel and divergent genes in the evolution of placental mammals. Proceedings. Biological Sciences. 284. PMID 28978728 DOI: 10.1098/rspb.2017.1357  0.64
2017 Hargreaves AD, Zhou L, Christensen J, Marlétaz F, Liu S, Li F, Jansen PG, Spiga E, Hansen MT, Pedersen SVH, Biswas S, Serikawa K, Fox BA, Taylor WR, Mulley JF, ... ... Holland PWH, et al. Genome sequence of a diabetes-prone rodent reveals a mutation hotspot around the ParaHox gene cluster. Proceedings of the National Academy of Sciences of the United States of America. PMID 28674003 DOI: 10.1073/pnas.1702930114  0.92
2017 Dunwell TL, Holland PWH. A sister of NANOG regulates genes expressed in pre-implantation human development. Open Biology. 7. PMID 28446706 DOI: 10.1098/rsob.170027  0.32
2017 Holland PW, Marlétaz F, Maeso I, Dunwell TL, Paps J. New genes from old: asymmetric divergence of gene duplicates and the evolution of development. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 372. PMID 27994121 DOI: 10.1098/rstb.2015.0480  0.64
2016 Dunwell TL, Holland PW. Diversity of human and mouse homeobox gene expression in development and adult tissues. Bmc Developmental Biology. 16: 40. PMID 27809766 DOI: 10.1186/s12861-016-0140-y  0.32
2016 Maeso I, Dunwell TL, Wyatt CD, Marlétaz F, Vető B, Bernal JA, Quah S, Irimia M, Holland PW. Evolutionary origin and functional divergence of totipotent cell homeobox genes in eutherian mammals. Bmc Biology. 14: 45. PMID 27296695 DOI: 10.1186/s12915-016-0267-0  0.56
2016 Braasch I, Gehrke AR, Smith JJ, Kawasaki K, Manousaki T, Pasquier J, Amores A, Desvignes T, Batzel P, Catchen J, Berlin AM, Campbell MS, Barrell D, Martin KJ, Mulley JF, ... ... Holland PW, et al. Corrigendum: The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons. Nature Genetics. 48: 700. PMID 27230688 DOI: 10.1038/ng0616-700c  0.92
2016 Braasch I, Gehrke AR, Smith JJ, Kawasaki K, Manousaki T, Pasquier J, Amores A, Desvignes T, Batzel P, Catchen J, Berlin AM, Campbell MS, Barrell D, Martin KJ, Mulley JF, ... ... Holland PW, et al. The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons. Nature Genetics. 48: 427-37. PMID 26950095 DOI: 10.1038/ng.3526  0.92
2016 Acemel RD, Tena JJ, Irastorza-Azcarate I, Marlétaz F, Gómez-Marín C, de la Calle-Mustienes E, Bertrand S, Diaz SG, Aldea D, Aury JM, Mangenot S, Holland PW, Devos DP, Maeso I, Escrivá H, et al. A single three-dimensional chromatin compartment in amphioxus indicates a stepwise evolution of vertebrate Hox bimodal regulation. Nature Genetics. PMID 26829752 DOI: 10.1038/ng.3497  0.52
2015 Quah S, Breuker CJ, Holland PW. A Diversity of Conserved and Novel Ovarian MicroRNAs in the Speckled Wood (Pararge aegeria). Plos One. 10: e0142243. PMID 26556800 DOI: 10.1371/journal.pone.0142243  0.56
2015 Quah S, Holland PW. The Hox cluster microRNA miR-615: a case study of intronic microRNA evolution. Evodevo. 6: 31. PMID 26451238 DOI: 10.1186/s13227-015-0027-1  0.56
2015 Kenny NJ, Chan KW, Nong W, Qu Z, Maeso I, Yip HY, Chan TF, Kwan HS, Holland PW, Chu KH, Hui JH. Ancestral whole-genome duplication in the marine chelicerate horseshoe crabs. Heredity. PMID 26419336 DOI: 10.1038/hdy.2015.89  0.52
2015 Marlétaz F, Maeso I, Faas L, Isaacs HV, Holland PW. Cdx ParaHox genes acquired distinct developmental roles after gene duplication in vertebrate evolution. Bmc Biology. 13: 56. PMID 26231746 DOI: 10.1186/s12915-015-0165-x  0.56
2015 Holland ND, Holland LZ, Holland PW. Scenarios for the making of vertebrates. Nature. 520: 450-5. PMID 25903626 DOI: 10.1038/nature14433  0.56
2015 Paps J, Xu F, Zhang G, Holland PW. Reinforcing the egg-timer: recruitment of novel lophotrochozoa homeobox genes to early and late development in the pacific oyster. Genome Biology and Evolution. 7: 677-88. PMID 25631164 DOI: 10.1093/gbe/evv018  0.56
2015 Quah S, Hui JH, Holland PW. A Burst of miRNA Innovation in the Early Evolution of Butterflies and Moths. Molecular Biology and Evolution. 32: 1161-74. PMID 25576364 DOI: 10.1093/molbev/msv004  0.56
2015 Holland PWH. Observations on fragrance collection behaviour of euglossine bees (Hymenoptera, Apidae) Revista Brasileira De Entomologia. 59: 62-64. DOI: 10.1016/j.rbe.2015.02.008  0.56
2014 Ferguson L, Marlétaz F, Carter JM, Taylor WR, Gibbs M, Breuker CJ, Holland PW. Ancient expansion of the hox cluster in lepidoptera generated four homeobox genes implicated in extra-embryonic tissue formation. Plos Genetics. 10: e1004698. PMID 25340822 DOI: 10.1371/journal.pgen.1004698  0.56
2014 Marlétaz F, Paps J, Maeso I, Holland PW. Discovery and classification of homeobox genes in animal genomes. Methods in Molecular Biology (Clifton, N.J.). 1196: 3-18. PMID 25151154 DOI: 10.1007/978-1-4939-1242-1_1  0.64
2014 Martin KJ, Holland PW. Enigmatic orthology relationships between Hox clusters of the African butterfly fish and other teleosts following ancient whole-genome duplication. Molecular Biology and Evolution. 31: 2592-611. PMID 24974377 DOI: 10.1093/molbev/msu202  0.56
2014 Mulley JF, Holland PW. Genomic organisation of the seven ParaHox genes of coelacanths. Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. 322: 352-8. PMID 23775937 DOI: 10.1002/jez.b.22513  0.92
2013 Barker D, Ferrier DE, Holland PW, Mitchell JB, Plaisier H, Ritchie MG, Smart SD. 4273Ï€: bioinformatics education on low cost ARM hardware. Bmc Bioinformatics. 14: 243. PMID 23937194 DOI: 10.1186/1471-2105-14-243  0.56
2013 Tsai IJ, Zarowiecki M, Holroyd N, Garciarrubio A, Sanchez-Flores A, Brooks KL, Tracey A, Bobes RJ, Fragoso G, Sciutto E, Aslett M, Beasley H, Bennett HM, Cai J, Camicia F, ... ... Holland PW, et al. The genomes of four tapeworm species reveal adaptations to parasitism. Nature. 496: 57-63. PMID 23485966 DOI: 10.1038/nature12031  0.56
2013 Marron AO, Alston MJ, Heavens D, Akam M, Caccamo M, Holland PW, Walker G. A family of diatom-like silicon transporters in the siliceous loricate choanoflagellates. Proceedings. Biological Sciences / the Royal Society. 280: 20122543. PMID 23407828 DOI: 10.1098/rspb.2012.2543  0.56
2012 Zhang G, Fang X, Guo X, Li L, Luo R, Xu F, Yang P, Zhang L, Wang X, Qi H, Xiong Z, Que H, Xie Y, Holland PW, Paps J, et al. The oyster genome reveals stress adaptation and complexity of shell formation. Nature. 490: 49-54. PMID 22992520 DOI: 10.1038/nature11413  0.56
2012 . Butterfly genome reveals promiscuous exchange of mimicry adaptations among species. Nature. 487: 94-8. PMID 22722851 DOI: 10.1038/nature11041  0.56
2012 Paps J, Holland PW, Shimeld SM. A genome-wide view of transcription factor gene diversity in chordate evolution: less gene loss in amphioxus? Briefings in Functional Genomics. 11: 177-86. PMID 22441554 DOI: 10.1093/bfgp/els012  0.64
2012 Hui JH, McDougall C, Monteiro AS, Holland PW, Arendt D, Balavoine G, Ferrier DE. Extensive chordate and annelid macrosynteny reveals ancestral homeobox gene organization. Molecular Biology and Evolution. 29: 157-65. PMID 21727239 DOI: 10.1093/molbev/msr175  0.56
2011 McGonnell IM, Graham A, Richardson J, Fish JL, Depew MJ, Dee CT, Holland PW, Takahashi T. Evolution of the Alx homeobox gene family: parallel retention and independent loss of the vertebrate Alx3 gene. Evolution & Development. 13: 343-51. PMID 21740507 DOI: 10.1111/j.1525-142X.2011.00489.x  0.56
2011 Loenarz C, Coleman ML, Boleininger A, Schierwater B, Holland PW, Ratcliffe PJ, Schofield CJ. The hypoxia-inducible transcription factor pathway regulates oxygen sensing in the simplest animal, Trichoplax adhaerens. Embo Reports. 12: 63-70. PMID 21109780 DOI: 10.1038/embor.2010.170  0.56
2010 Li G, Holland PW. The origin and evolution of ARGFX homeobox loci in mammalian radiation. Bmc Evolutionary Biology. 10: 182. PMID 20565723 DOI: 10.1186/1471-2148-10-182  0.56
2010 Butts T, Holland PW, Ferrier DE. Ancient homeobox gene loss and the evolution of chordate brain and pharynx development: deductions from amphioxus gene expression. Proceedings. Biological Sciences / the Royal Society. 277: 3381-9. PMID 20554554 DOI: 10.1098/rspb.2010.0647  0.56
2010 Mulley JF, Holland PW. Parallel retention of Pdx2 genes in cartilaginous fish and coelacanths. Molecular Biology and Evolution. 27: 2386-91. PMID 20463047 DOI: 10.1093/molbev/msq121  0.92
2009 Mulley JF, Zhong YF, Holland PW. Comparative genomics of chondrichthyan Hoxa clusters. Bmc Evolutionary Biology. 9: 218. PMID 19725973 DOI: 10.1186/1471-2148-9-218  0.56
2009 Sato A, White-Cooper H, Doggett K, Holland PW. Degenerate evolution of the hedgehog gene in a hemichordate lineage. Proceedings of the National Academy of Sciences of the United States of America. 106: 7491-4. PMID 19380722 DOI: 10.1073/pnas.0810430106  0.56
2008 Putnam NH, Butts T, Ferrier DE, Furlong RF, Hellsten U, Kawashima T, Robinson-Rechavi M, Shoguchi E, Terry A, Yu JK, Benito-Gutiérrez EL, Dubchak I, Garcia-Fernàndez J, Gibson-Brown JJ, Grigoriev IV, ... ... Holland PW, et al. The amphioxus genome and the evolution of the chordate karyotype. Nature. 453: 1064-71. PMID 18563158 DOI: 10.1038/nature06967  0.56
2008 Butts T, Holland PW, Ferrier DE. The urbilaterian Super-Hox cluster. Trends in Genetics : Tig. 24: 259-62. PMID 18472178 DOI: 10.1016/j.tig.2007.09.006  0.56
2008 Sato A, Rickards B, Holland PWH. The origins of graptolites and other pterobranchs: A journey from 'Polyzoa' Lethaia. 41: 303-316. DOI: 10.1111/j.1502-3931.2008.00123.x  0.56
2008 Holland LZ, Albalat R, Azumi K, Benito-Gutiérrez E, Blow MJ, Bronner-Fraser M, Brunet F, Butts T, Candiani S, Dishaw LJ, Ferrier DEK, Garcia-Fernàndez J, Gibson-Brown JJ, Gissi C, Godzik A, ... ... Holland PWH, et al. The amphioxus genome illuminates vertebrate origins and cephalochordate biology (Genome Research (2008) 18, (1100-1111)) Genome Research. 18: 1380.  0.56
2007 Holland PW, Booth HA, Bruford EA. Classification and nomenclature of all human homeobox genes. Bmc Biology. 5: 47. PMID 17963489 DOI: 10.1186/1741-7007-5-47  0.56
2007 Furlong RF, Younger R, Kasahara M, Reinhardt R, Thorndyke M, Holland PW. A degenerate ParaHox gene cluster in a degenerate vertebrate. Molecular Biology and Evolution. 24: 2681-6. PMID 17895517 DOI: 10.1093/molbev/msm194  0.56
2007 Ruiz-Trillo I, Burger G, Holland PW, King N, Lang BF, Roger AJ, Gray MW. The origins of multicellularity: a multi-taxon genome initiative. Trends in Genetics : Tig. 23: 113-8. PMID 17275133 DOI: 10.1016/j.tig.2007.01.005  0.56
2006 Dearden PK, Wilson MJ, Sablan L, Osborne PW, Havler M, McNaughton E, Kimura K, Milshina NV, Hasselmann M, Gempe T, Schioett M, Brown SJ, Elsik CG, Holland PW, Kadowaki T, et al. Patterns of conservation and change in honey bee developmental genes. Genome Research. 16: 1376-84. PMID 17065607 DOI: 10.1101/gr.5108606  0.56
2006 Mulley JF, Chiu CH, Holland PW. Breakup of a homeobox cluster after genome duplication in teleosts. Proceedings of the National Academy of Sciences of the United States of America. 103: 10369-72. PMID 16801555 DOI: 10.1073/pnas.0600341103  0.92
2006 Osborne PW, Luke GN, Holland PW, Ferrier DE. Identification and characterisation of five novel miniature inverted-repeat transposable elements (MITEs) in amphioxus (Branchiostoma floridae). International Journal of Biological Sciences. 2: 54-60. PMID 16733534  0.56
2002 Ferrier DE, Holland PW. Ciona intestinalis ParaHox genes: evolution of Hox/ParaHox cluster integrity, developmental mode, and temporal colinearity. Molecular Phylogenetics and Evolution. 24: 412-7. PMID 12220984 DOI: 10.1016/S1055-7903(02)00204-X  0.56
2002 Takahashi T, Holland PW, Cohn MJ, Shimizu K, Kurokawa M, Hirai H. An orphan PRD class homeobox gene expressed in mouse brain and limb development. Development Genes and Evolution. 212: 293-7. PMID 12111214 DOI: 10.1007/s00427-002-0244-1  0.56
2001 Ferrier DE, Holland PW. Sipunculan ParaHox genes. Evolution & Development. 3: 263-70. PMID 11478523 DOI: 10.1046/j.1525-142X.2001.003004263.x  0.56
2001 Ferrier DE, Brooke NM, Panopoulou G, Holland PW. The Mnx homeobox gene class defined by HB9, MNR2 and amphioxus AmphiMnx. Development Genes and Evolution. 211: 103-7. PMID 11455421 DOI: 10.1007/s004270000124  0.56
2001 Ferrier DE, Holland PW. Ancient origin of the Hox gene cluster. Nature Reviews. Genetics. 2: 33-8. PMID 11253066 DOI: 10.1038/35047605  0.56
2000 Ferrier DE, Minguillón C, Holland PW, Garcia-Fernàndez J. The amphioxus Hox cluster: deuterostome posterior flexibility and Hox14. Evolution & Development. 2: 284-93. PMID 11252557 DOI: 10.1046/j.1525-142X.2000.00070.x  0.56
2000 Knight RD, Panopoulou GD, Holland PW, Shimeld SM. An amphioxus Krox gene: insights into vertebrate hindbrain evolution. Development Genes and Evolution. 210: 518-21. PMID 11180801 DOI: 10.1007/s004270050341  0.56
2000 Manzanares M, Wada H, Itasaki N, Trainor PA, Krumlauf R, Holland PW. Conservation and elaboration of Hox gene regulation during evolution of the vertebrate head. Nature. 408: 854-7. PMID 11130723 DOI: 10.1038/35048570  0.56
2000 Rokas A, Holland PW. Rare genomic changes as a tool for phylogenetics. Trends in Ecology & Evolution. 15: 454-459. PMID 11050348 DOI: 10.1016/S0169-5347(00)01967-4  0.56
2000 Williams NA, Holland PW. An amphioxus Emx homeobox gene reveals duplication during vertebrate evolution. Molecular Biology and Evolution. 17: 1520-8. PMID 11018158  0.56
2000 Shimeld SM, Holland PW. Vertebrate innovations. Proceedings of the National Academy of Sciences of the United States of America. 97: 4449-52. PMID 10781042  0.48
1999 Rokas A, Kathirithamby J, Holland PW. Intron insertion as a phylogenetic character: the engrailed homeobox of Strepsiptera does not indicate affinity with Diptera. Insect Molecular Biology. 8: 527-30. PMID 10620047 DOI: 10.1046/j.1365-2583.1999.00149.x  0.56
1999 Holland PW. Wholemount in situ hybridization to amphioxus embryos. Methods in Molecular Biology (Clifton, N.J.). 97: 641-4. PMID 10443398 DOI: 10.1385/1-59259-270-8:641  0.56
1999 Holland PW, Wada H. Protochordates. Methods in Molecular Biology (Clifton, N.J.). 97: 513-6. PMID 10443388 DOI: 10.1385/1-59259-270-8:513  0.56
1999 Sharman AC, Shimeld SM, Holland PW. An amphioxus Msx gene expressed predominantly in the dorsal neural tube. Development Genes and Evolution. 209: 260-3. PMID 10079370  0.48
1998 Williams NA, Holland PW. Molecular evolution of the brain of chordates. Brain, Behavior and Evolution. 52: 177-85. PMID 9787218  0.56
1998 Williams NA, Holland PW. Gene and domain duplication in the chordate Otx gene family: insights from amphioxus Otx. Molecular Biology and Evolution. 15: 600-7. PMID 9580990  0.56
1998 Wada H, Saiga H, Satoh N, Holland PW. Tripartite organization of the ancestral chordate brain and the antiquity of placodes: insights from ascidian Pax-2/5/8, Hox and Otx genes. Development (Cambridge, England). 125: 1113-22. PMID 9463358  0.56
1997 Abouheif E, Akam M, Dickinson WJ, Holland PW, Meyer A, Patel NH, Raff RA, Roth VL, Wray GA. Homology and developmental genes. Trends in Genetics : Tig. 13: 432-3. PMID 9385839  0.56
1996 Garcia-Fernàndez J, Holland PW. Amphioxus Hox genes: insights into evolution and development The International Journal of Developmental Biology. 71S-72S. PMID 9087701  0.56
1996 Holland PW. Unity or diversity? Trends in Genetics : Tig. 12: 324. PMID 8783945  0.56
1995 Holland PW, Graham A. Evolution of regional identity in the vertebrate nervous system Perspectives On Developmental Neurobiology. 3: 17-27. PMID 8542252  0.56
1995 Dixon DR, Sole-Cava AM, Pascoe PL, Holland PW. Periostracal adventitious hairs on spat of the mussel Mytilus edulis Journal of the Marine Biological Association of the United Kingdom. 75: 363-372. DOI: 10.1017/S0025315400018233  0.56
1994 Holland PW, Garcia-Fernàndez J, Williams NA, Sidow A. Gene duplications and the origins of vertebrate development Development (Cambridge, England). Supplement. 125-133. PMID 7579513  0.56
1991 Holland PW, Hacker AM, Williams NA. A molecular analysis of the phylogenetic affinities of Saccoglossus cambrensis Brambell & Cole (Hemichordata) Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences. 332: 185-189. PMID 1680236  0.56
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