Didier Stainier, PhD - Publications

University of California, San Francisco, San Francisco, CA 

208 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Sidhwani P, Leerberg DM, Boezio GLM, Capasso TL, Yang H, Chi NC, Roman BL, Stainier DYR, Yelon D. Cardiac function modulates endocardial cell dynamics to shape the cardiac outflow tract. Development (Cambridge, England). PMID 32439760 DOI: 10.1242/dev.185900  1
2018 Reischauer S, Stone OA, Villasenor A, Chi N, Jin SW, Martin M, Lee MT, Fukuda N, Marass M, Witty A, Fiddes I, Kuo T, Chung WS, Salek S, Lerrigo R, ... ... Stainier DYR, et al. Corrigendum: Cloche is a bHLH-PAS transcription factor that drives haemato-vascular specification. Nature. 555: 543. PMID 29565360 DOI: 10.1038/Nature25991  0.72
2017 Stainier DYR, Raz E, Lawson ND, Ekker SC, Burdine RD, Eisen JS, Ingham PW, Schulte-Merker S, Yelon D, Weinstein BM, Mullins MC, Wilson SW, Ramakrishnan L, Amacher SL, Neuhauss SCF, et al. Guidelines for morpholino use in zebrafish. Plos Genetics. 13: e1007000. PMID 29049395 DOI: 10.1371/Journal.Pgen.1007000  1
2016 Marín-Juez R, Marass M, Gauvrit S, Rossi A, Lai SL, Materna SC, Black BL, Stainier DY. Fast revascularization of the injured area is essential to support zebrafish heart regeneration. Proceedings of the National Academy of Sciences of the United States of America. PMID 27647901 DOI: 10.1073/Pnas.1605431113  1
2016 Cox AG, Hwang KL, Brown KK, Evason KJ, Beltz S, Tsomides A, O'Connor K, Galli GG, Yimlamai D, Chhangawala S, Yuan M, Lien EC, Wucherpfennig J, Nissim S, Minami A, ... ... Stainier DY, et al. Yap reprograms glutamine metabolism to increase nucleotide biosynthesis and enable liver growth. Nature Cell Biology. PMID 27428308 DOI: 10.1038/Ncb3389  1
2016 Reischauer S, Stone OA, Villasenor A, Chi N, Jin SW, Martin M, Lee MT, Fukuda N, Marass M, Witty A, Fiddes I, Kuo T, Chung WS, Salek S, Lerrigo R, ... ... Stainier DY, et al. Cloche is a bHLH-PAS transcription factor that drives haemato-vascular specification. Nature. 535: 294-8. PMID 27411634 DOI: 10.1038/Nature18614  1
2016 Housley MP, Njaine B, Ricciardi F, Stone OA, Hölper S, Krüger M, Kostin S, Stainier DY. Cavin4b/Murcb Is Required for Skeletal Muscle Development and Function in Zebrafish. Plos Genetics. 12: e1006099. PMID 27294373 DOI: 10.1371/Journal.Pgen.1006099  1
2016 Orr N, Arnaout R, Gula LJ, Spears DA, Leong-Sit P, Li Q, Tarhuni W, Reischauer S, Chauhan VS, Borkovich M, Uppal S, Adler A, Coughlin SR, Stainier DY, Gollob MH. A mutation in the atrial-specific myosin light chain gene (MYL4) causes familial atrial fibrillation. Nature Communications. 7: 11303. PMID 27066836 DOI: 10.1038/ncomms11303  1
2016 Koenig AL, Baltrunaite K, Bower NI, Rossi A, Stainier DY, Hogan BM, Sumanas S. Vegfa signaling promotes zebrafish intestinal vasculature development through endothelial cell migration from the posterior cardinal vein. Developmental Biology. PMID 26769101 DOI: 10.1016/J.Ydbio.2016.01.002  1
2015 Samsa LA, Givens C, Tzima E, Stainier DY, Qian L, Liu J. Cardiac contraction activates endocardial Notch signaling to modulate chamber maturation in zebrafish. Development (Cambridge, England). 142: 4080-91. PMID 26628092 DOI: 10.1242/dev.125724  1
2015 Rossi A, Kontarakis Z, Gerri C, Nolte H, Hölper S, Krüger M, Stainier DY. Genetic compensation induced by deleterious mutations but not gene knockdowns. Nature. 524: 230-3. PMID 26168398 DOI: 10.1038/nature14580  1
2015 Evason KJ, Francisco MT, Juric V, Balakrishnan S, Lopez Pazmino Mdel P, Gordan JD, Kakar S, Spitsbergen J, Goga A, Stainier DY. Identification of Chemical Inhibitors of β-Catenin-Driven Liver Tumorigenesis in Zebrafish. Plos Genetics. 11: e1005305. PMID 26134322 DOI: 10.1371/journal.pgen.1005305  1
2015 Palencia-Desai S, Rost MS, Schumacher JA, Ton QV, Craig MP, Baltrunaite K, Koenig AL, Wang J, Poss KD, Chi NC, Stainier DY, Sumanas S. Myocardium and BMP signaling are required for endocardial differentiation. Development (Cambridge, England). PMID 26092845 DOI: 10.1242/Dev.118687  1
2015 Vanhollebeke B, Stone OA, Bostaille N, Cho C, Zhou Y, Maquet E, Gauquier A, Cabochette P, Fukuhara S, Mochizuki N, Nathans J, Stainier DY. Tip cell-specific requirement for an atypical Gpr124- and Reck-dependent Wnt/β-catenin pathway during brain angiogenesis. Elife. 4. PMID 26051822 DOI: 10.7554/eLife.06489  1
2015 Ye L, Robertson MA, Hesselson D, Stainier DY, Anderson RM. Glucagon is essential for alpha cell transdifferentiation and beta cell neogenesis. Development (Cambridge, England). 142: 1407-17. PMID 25852199 DOI: 10.1242/Dev.117911  1
2015 Kametani Y, Chi NC, Stainier DY, Takada S. Notch signaling regulates venous arterialization during zebrafish fin regeneration. Genes to Cells : Devoted to Molecular & Cellular Mechanisms. 20: 427-38. PMID 25810153 DOI: 10.1111/gtc.12234  1
2015 Gut P, Stainier DY. Whole-organism screening for modulators of fasting metabolism using transgenic zebrafish. Methods in Molecular Biology (Clifton, N.J.). 1263: 157-65. PMID 25618343 DOI: 10.1007/978-1-4939-2269-7_12  1
2015 Stainier DY, Kontarakis Z, Rossi A. Making sense of anti-sense data. Developmental Cell. 32: 7-8. PMID 25584794 DOI: 10.1016/j.devcel.2014.12.012  1
2015 Nolte H, Hölper S, Housley MP, Islam S, Piller T, Konzer A, Stainier DY, Braun T, Krüger M. Dynamics of zebrafish fin regeneration using a pulsed SILAC approach. Proteomics. 15: 739-51. PMID 25504979 DOI: 10.1002/Pmic.201400316  1
2015 Collins MM, Stainier DYR. Organ Function as a Modulator of Organ Formation: Lessons from Zebrafish Current Topics in Developmental Biology. DOI: 10.1016/bs.ctdb.2015.10.017  1
2014 Arnaout R, Reischauer S, Stainier DY. Recovery of adult zebrafish hearts for high-throughput applications. Journal of Visualized Experiments : Jove. PMID 25548868 DOI: 10.3791/52248  1
2014 Sawamiphak S, Kontarakis Z, Stainier DY. Interferon gamma signaling positively regulates hematopoietic stem cell emergence. Developmental Cell. 31: 640-53. PMID 25490269 DOI: 10.1016/j.devcel.2014.11.007  1
2014 Housley MP, Reischauer S, Dieu M, Raes M, Stainier DY, Vanhollebeke B. Translational profiling through biotinylation of tagged ribosomes in zebrafish. Development (Cambridge, England). 141: 3988-93. PMID 25231762 DOI: 10.1242/dev.111849  1
2014 Reischauer S, Arnaout R, Ramadass R, Stainier DY. Actin binding GFP allows 4D in vivo imaging of myofilament dynamics in the zebrafish heart and the identification of Erbb2 signaling as a remodeling factor of myofibril architecture. Circulation Research. 115: 845-56. PMID 25228389 DOI: 10.1161/CIRCRESAHA.115.304356  1
2014 Sawamiphak S, Stainier DY. Developmental biology: It takes muscle to make blood cells. Nature. 512: 257-8. PMID 25119030 DOI: 10.1038/nature13740  1
2014 Tsuji N, Ninov N, Delawary M, Osman S, Roh AS, Gut P, Stainier DY. Whole organism high content screening identifies stimulators of pancreatic beta-cell proliferation. Plos One. 9: e104112. PMID 25117518 DOI: 10.1371/journal.pone.0104112  1
2014 Kalogirou S, Malissovas N, Moro E, Argenton F, Stainier DY, Beis D. Intracardiac flow dynamics regulate atrioventricular valve morphogenesis. Cardiovascular Research. 104: 49-60. PMID 25100766 DOI: 10.1093/cvr/cvu186  1
2014 Schulte-Merker S, Stainier DY. Out with the old, in with the new: reassessing morpholino knockdowns in light of genome editing technology. Development (Cambridge, England). 141: 3103-4. PMID 25100652 DOI: 10.1242/dev.112003  1
2014 Ishikawa H, Ide T, Yagi T, Jiang X, Hirono M, Sasaki H, Yanagisawa H, Wemmer KA, Stainier DY, Qin H, Kamiya R, Marshall WF. TTC26/DYF13 is an intraflagellar transport protein required for transport of motility-related proteins into flagella. Elife. 3: e01566. PMID 24596149 DOI: 10.7554/Elife.01566  1
2014 Markmiller S, Cloonan N, Lardelli RM, Doggett K, Keightley MC, Boglev Y, Trotter AJ, Ng AY, Wilkins SJ, Verkade H, Ober EA, Field HA, Grimmond SM, Lieschke GJ, Stainier DY, et al. Minor class splicing shapes the zebrafish transcriptome during development. Proceedings of the National Academy of Sciences of the United States of America. 111: 3062-7. PMID 24516132 DOI: 10.1073/Pnas.1305536111  1
2014 Staudt DW, Liu J, Thorn KS, Stuurman N, Liebling M, Stainier DY. High-resolution imaging of cardiomyocyte behavior reveals two distinct steps in ventricular trabeculation. Development (Cambridge, England). 141: 585-93. PMID 24401373 DOI: 10.1242/Dev.098632  1
2014 Sakano D, Shiraki N, Kikawa K, Yamazoe T, Kataoka M, Umeda K, Araki K, Mao D, Matsumoto S, Nakagata N, Andersson O, Stainier D, Endo F, Kume K, Uesugi M, et al. VMAT2 identified as a regulator of late-stage β-cell differentiation. Nature Chemical Biology. 10: 141-8. PMID 24316738 DOI: 10.1038/nchembio.1410  1
2014 Choi TY, Ninov N, Stainier DY, Shin D. Extensive conversion of hepatic biliary epithelial cells to hepatocytes after near total loss of hepatocytes in zebrafish. Gastroenterology. 146: 776-88. PMID 24148620 DOI: 10.1053/J.Gastro.2013.10.019  1
2013 Anderson RM, Delous M, Bosch JA, Ye L, Robertson MA, Hesselson D, Stainier DY. Hepatocyte growth factor signaling in intrapancreatic ductal cells drives pancreatic morphogenesis. Plos Genetics. 9: e1003650. PMID 23935514 DOI: 10.1371/Journal.Pgen.1003650  1
2013 Ninov N, Hesselson D, Gut P, Zhou A, Fidelin K, Stainier DY. Metabolic regulation of cellular plasticity in the pancreas. Current Biology : Cb. 23: 1242-50. PMID 23791726 DOI: 10.1016/J.Cub.2013.05.037  1
2013 Zhang R, Han P, Yang H, Ouyang K, Lee D, Lin YF, Ocorr K, Kang G, Chen J, Stainier DY, Yelon D, Chi NC. In vivo cardiac reprogramming contributes to zebrafish heart regeneration. Nature. 498: 497-501. PMID 23783515 DOI: 10.1038/nature12322  1
2013 Hochgreb-Hägele T, Yin C, Koo DE, Bronner ME, Stainier DY. Laminin β1a controls distinct steps during the establishment of digestive organ laterality. Development (Cambridge, England). 140: 2734-45. PMID 23757411 DOI: 10.1242/Dev.097618  1
2013 Nussbaum JM, Liu LJ, Hasan SA, Schaub M, McClendon A, Stainier DY, Sakaguchi TF. Homeostatic generation of reactive oxygen species protects the zebrafish liver from steatosis. Hepatology (Baltimore, Md.). 58: 1326-38. PMID 23744565 DOI: 10.1002/hep.26551  1
2013 Ghajar CM, Peinado H, Mori H, Matei IR, Evason KJ, Brazier H, Almeida D, Koller A, Hajjar KA, Stainier DY, Chen EI, Lyden D, Bissell MJ. The perivascular niche regulates breast tumour dormancy. Nature Cell Biology. 15: 807-17. PMID 23728425 DOI: 10.1038/Ncb2767  1
2013 Lancman JJ, Zvenigorodsky N, Gates KP, Zhang D, Solomon K, Humphrey RK, Kuo T, Setiawan L, Verkade H, Chi YI, Jhala US, Wright CV, Stainier DY, Dong PD. Specification of hepatopancreas progenitors in zebrafish by hnf1ba and wnt2bb. Development (Cambridge, England). 140: 2669-79. PMID 23720049 DOI: 10.1242/dev.090993  1
2013 Yin C, Evason KJ, Asahina K, Stainier DY. Hepatic stellate cells in liver development, regeneration, and cancer. The Journal of Clinical Investigation. 123: 1902-10. PMID 23635788 DOI: 10.1172/JCI66369  1
2013 Boglev Y, Badrock AP, Trotter AJ, Du Q, Richardson EJ, Parslow AC, Markmiller SJ, Hall NE, de Jong-Curtain TA, Ng AY, Verkade H, Ober EA, Field HA, Shin D, Shin CH, ... ... Stainier DY, et al. Autophagy induction is a Tor- and Tp53-independent cell survival response in a zebrafish model of disrupted ribosome biogenesis. Plos Genetics. 9: e1003279. PMID 23408911 DOI: 10.1371/Journal.Pgen.1003279  1
2013 Mugoni V, Postel R, Catanzaro V, De Luca E, Turco E, Digilio G, Silengo L, Murphy MP, Medana C, Stainier DY, Bakkers J, Santoro MM. Ubiad1 is an antioxidant enzyme that regulates eNOS activity by CoQ10 synthesis. Cell. 152: 504-18. PMID 23374346 DOI: 10.1016/j.cell.2013.01.013  1
2013 Gut P, Baeza-Raja B, Andersson O, Hasenkamp L, Hsiao J, Hesselson D, Akassoglou K, Verdin E, Hirschey MD, Stainier DY. Whole-organism screening for gluconeogenesis identifies activators of fasting metabolism. Nature Chemical Biology. 9: 97-104. PMID 23201900 DOI: 10.1038/Nchembio.1136  1
2012 Staudt D, Stainier D. Uncovering the molecular and cellular mechanisms of heart development using the zebrafish. Annual Review of Genetics. 46: 397-418. PMID 22974299 DOI: 10.1146/Annurev-Genet-110711-155646  1
2012 Hassel D, Cheng P, White MP, Ivey KN, Kroll J, Augustin HG, Katus HA, Stainier DY, Srivastava D. MicroRNA-10 regulates the angiogenic behavior of zebrafish and human endothelial cells by promoting vascular endothelial growth factor signaling. Circulation Research. 111: 1421-33. PMID 22955733 DOI: 10.1161/Circresaha.112.279711  1
2012 Woo S, Housley MP, Weiner OD, Stainier DY. Nodal signaling regulates endodermal cell motility and actin dynamics via Rac1 and Prex1. The Journal of Cell Biology. 198: 941-52. PMID 22945937 DOI: 10.1083/Jcb.201203012  1
2012 Herbert SP, Cheung JY, Stainier DY. Determination of endothelial stalk versus tip cell potential during angiogenesis by H2.0-like homeobox-1. Current Biology : Cb. 22: 1789-94. PMID 22921365 DOI: 10.1016/j.cub.2012.07.037  1
2012 Ni TT, Lu J, Zhu M, Maddison LA, Boyd KL, Huskey L, Ju B, Hesselson D, Zhong TP, Page-McCaw PS, Stainier DY, Chen W. Conditional control of gene function by an invertible gene trap in zebrafish. Proceedings of the National Academy of Sciences of the United States of America. 109: 15389-94. PMID 22908272 DOI: 10.1073/Pnas.1206131109  1
2012 Mellman K, Huisken J, Dinsmore C, Hoppe C, Stainier DY. Fibrillin-2b regulates endocardial morphogenesis in zebrafish. Developmental Biology. 372: 111-9. PMID 22841646 DOI: 10.1016/j.ydbio.2012.07.015  1
2012 Delous M, Yin C, Shin D, Ninov N, Debrito Carten J, Pan L, Ma TP, Farber SA, Moens CB, Stainier DY. Sox9b is a key regulator of pancreaticobiliary ductal system development. Plos Genetics. 8: e1002754. PMID 22719264 DOI: 10.1371/Journal.Pgen.1002754  1
2012 Andersson O, Adams BA, Yoo D, Ellis GC, Gut P, Anderson RM, German MS, Stainier DY. Adenosine signaling promotes regeneration of pancreatic β cells in vivo. Cell Metabolism. 15: 885-94. PMID 22608007 DOI: 10.1016/j.cmet.2012.04.018  1
2012 Ninov N, Borius M, Stainier DY. Different levels of Notch signaling regulate quiescence, renewal and differentiation in pancreatic endocrine progenitors. Development (Cambridge, England). 139: 1557-67. PMID 22492351 DOI: 10.1242/dev.076000  1
2012 Yin C, Evason KJ, Maher JJ, Stainier DY. The basic helix-loop-helix transcription factor, heart and neural crest derivatives expressed transcript 2, marks hepatic stellate cells in zebrafish: analysis of stellate cell entry into the developing liver. Hepatology (Baltimore, Md.). 56: 1958-70. PMID 22488653 DOI: 10.1002/Hep.25757  1
2012 Liu J, Stainier DY. Zebrafish in the study of early cardiac development. Circulation Research. 110: 870-4. PMID 22427324 DOI: 10.1161/CIRCRESAHA.111.246504  1
2012 Shin D, Weidinger G, Moon RT, Stainier DY. Intrinsic and extrinsic modifiers of the regulative capacity of the developing liver. Mechanisms of Development. 128: 525-35. PMID 22313811 DOI: 10.1016/J.Mod.2012.01.005  1
2012 Hugo SE, Cruz-Garcia L, Karanth S, Anderson RM, Stainier DY, Schlegel A. A monocarboxylate transporter required for hepatocyte secretion of ketone bodies during fasting. Genes & Development. 26: 282-93. PMID 22302940 DOI: 10.1101/Gad.180968.111  1
2012 Kirchmaier BC, Poon KL, Schwerte T, Huisken J, Winkler C, Jungblut B, Stainier DY, Brand T. The Popeye domain containing 2 (popdc2) gene in zebrafish is required for heart and skeletal muscle development. Developmental Biology. 363: 438-50. PMID 22290329 DOI: 10.1016/j.ydbio.2012.01.015  1
2012 Schaub M, Nussbaum J, Verkade H, Ober EA, Stainier DY, Sakaguchi TF. Mutation of zebrafish Snapc4 is associated with loss of the intrahepatic biliary network. Developmental Biology. 363: 128-37. PMID 22222761 DOI: 10.1016/j.ydbio.2011.12.025  1
2012 Balczerski B, Matsutani M, Castillo P, Osborne N, Stainier DY, Crump JG. Analysis of sphingosine-1-phosphate signaling mutants reveals endodermal requirements for the growth but not dorsoventral patterning of jaw skeletal precursors. Developmental Biology. 362: 230-41. PMID 22185793 DOI: 10.1016/j.ydbio.2011.12.010  1
2012 Cheung ID, Bagnat M, Ma TP, Datta A, Evason K, Moore JC, Lawson ND, Mostov KE, Moens CB, Stainier DY. Regulation of intrahepatic biliary duct morphogenesis by Claudin 15-like b. Developmental Biology. 361: 68-78. PMID 22020048 DOI: 10.1016/J.Ydbio.2011.10.004  1
2012 Kirchmaier BC, Lai Poon K, Schwerte T, Huisken J, Winkler C, Jungblut B, Stainier DY, Brand T. Corrigendum to "The Popeye domain containing 2 (popdc2) gene in zebrafish is required for heart and skeletal muscle development" [Dev. Biol. 363 (2012) 438-450] Developmental Biology. 366: 433. DOI: 10.1016/j.ydbio.2012.04.017  1
2011 Arnaout R, Stainier DY. Developmental biology: physics adds a twist to gut looping. Current Biology : Cb. 21: R854-7. PMID 22032191 DOI: 10.1016/j.cub.2011.09.005  1
2011 Herbert SP, Stainier DY. Molecular control of endothelial cell behaviour during blood vessel morphogenesis. Nature Reviews. Molecular Cell Biology. 12: 551-64. PMID 21860391 DOI: 10.1038/nrm3176  1
2011 Zhang SS, Kim KH, Rosen A, Smyth JW, Sakuma R, Delgado-Olguín P, Davis M, Chi NC, Puviindran V, Gaborit N, Sukonnik T, Wylie JN, Brand-Arzamendi K, Farman GP, Kim J, ... ... Stainier DY, et al. Iroquois homeobox gene 3 establishes fast conduction in the cardiac His-Purkinje network. Proceedings of the National Academy of Sciences of the United States of America. 108: 13576-81. PMID 21825130 DOI: 10.1073/Pnas.1106911108  1
2011 Hesselson D, Anderson RM, Stainier DY. Suppression of Ptf1a activity induces acinar-to-endocrine conversion. Current Biology : Cb. 21: 712-7. PMID 21497092 DOI: 10.1016/J.Cub.2011.03.041  1
2011 Fish JE, Wythe JD, Xiao T, Bruneau BG, Stainier DY, Srivastava D, Woo S. A Slit/miR-218/Robo regulatory loop is required during heart tube formation in zebrafish. Development (Cambridge, England). 138: 1409-19. PMID 21385766 DOI: 10.1242/Dev.060046  1
2011 Shin D, Lee Y, Poss KD, Stainier DY. Restriction of hepatic competence by Fgf signaling. Development (Cambridge, England). 138: 1339-48. PMID 21385764 DOI: 10.1242/Dev.054395  1
2011 Delgado-Olguín P, Brand-Arzamendi K, Scott IC, Jungblut B, Stainier DY, Bruneau BG, Recillas-Targa F. CTCF promotes muscle differentiation by modulating the activity of myogenic regulatory factors. The Journal of Biological Chemistry. 286: 12483-94. PMID 21288905 DOI: 10.1074/jbc.M110.164574  1
2011 Tittle RK, Sze R, Ng A, Nuckels RJ, Swartz ME, Anderson RM, Bosch J, Stainier DY, Eberhart JK, Gross JM. Uhrf1 and Dnmt1 are required for development and maintenance of the zebrafish lens. Developmental Biology. 350: 50-63. PMID 21126517 DOI: 10.1016/J.Ydbio.2010.11.009  1
2011 Jurczyk A, Roy N, Bajwa R, Gut P, Lipson K, Yang C, Covassin L, Racki WJ, Rossini AA, Phillips N, Stainier DY, Greiner DL, Brehm MA, Bortell R, diIorio P. Dynamic glucoregulation and mammalian-like responses to metabolic and developmental disruption in zebrafish. General and Comparative Endocrinology. 170: 334-45. PMID 20965191 DOI: 10.1016/J.Ygcen.2010.10.010  1
2010 Arrenberg AB, Stainier DY, Baier H, Huisken J. Optogenetic control of cardiac function. Science (New York, N.Y.). 330: 971-4. PMID 21071670 DOI: 10.1126/science.1195929  1
2010 Liu J, Bressan M, Hassel D, Huisken J, Staudt D, Kikuchi K, Poss KD, Mikawa T, Stainier DY. A dual role for ErbB2 signaling in cardiac trabeculation. Development (Cambridge, England). 137: 3867-75. PMID 20978078 DOI: 10.1242/Dev.053736  1
2010 Bagnat M, Navis A, Herbstreith S, Brand-Arzamendi K, Curado S, Gabriel S, Mostov K, Huisken J, Stainier DY. Cse1l is a negative regulator of CFTR-dependent fluid secretion. Current Biology : Cb. 20: 1840-5. PMID 20933420 DOI: 10.1016/J.Cub.2010.09.012  1
2010 Kalousova A, Mavropoulos A, Adams BA, Nekrep N, Li Z, Krauss S, Stainier DY, German MS. Dachshund homologues play a conserved role in islet cell development. Developmental Biology. 348: 143-52. PMID 20869363 DOI: 10.1016/j.ydbio.2010.09.007  1
2010 Wilson CW, Stainier DY. Vertebrate Hedgehog signaling: cilia rule. Bmc Biology. 8: 102. PMID 20687907 DOI: 10.1186/1741-7007-8-102  1
2010 Chi NC, Bussen M, Brand-Arzamendi K, Ding C, Olgin JE, Shaw RM, Martin GR, Stainier DY. Cardiac conduction is required to preserve cardiac chamber morphology. Proceedings of the National Academy of Sciences of the United States of America. 107: 14662-7. PMID 20675583 DOI: 10.1073/pnas.0909432107  1
2010 Curado S, Stainier DY. deLiver'in regeneration: injury response and development. Seminars in Liver Disease. 30: 288-95. PMID 20665380 DOI: 10.1055/s-0030-1255357  1
2010 Yin C, Kikuchi K, Hochgreb T, Poss KD, Stainier DY. Hand2 regulates extracellular matrix remodeling essential for gut-looping morphogenesis in zebrafish. Developmental Cell. 18: 973-84. PMID 20627079 DOI: 10.1016/J.Devcel.2010.05.009  1
2010 Curado S, Ober EA, Walsh S, Cortes-Hernandez P, Verkade H, Koehler CM, Stainier DY. The mitochondrial import gene tomm22 is specifically required for hepatocyte survival and provides a liver regeneration model. Disease Models & Mechanisms. 3: 486-95. PMID 20483998 DOI: 10.1242/Dmm.004390  1
2010 Liu J, Stainier DY. Tbx5 and Bmp signaling are essential for proepicardium specification in zebrafish. Circulation Research. 106: 1818-28. PMID 20413782 DOI: 10.1161/CIRCRESAHA.110.217950  1
2010 Kikuchi K, Holdway JE, Werdich AA, Anderson RM, Fang Y, Egnaczyk GF, Evans T, Macrae CA, Stainier DY, Poss KD. Primary contribution to zebrafish heart regeneration by gata4(+) cardiomyocytes. Nature. 464: 601-5. PMID 20336144 DOI: 10.1038/Nature08804  1
2010 Bertrand JY, Chi NC, Santoso B, Teng S, Stainier DY, Traver D. Haematopoietic stem cells derive directly from aortic endothelium during development. Nature. 464: 108-11. PMID 20154733 DOI: 10.1038/Nature08738  1
2010 Chung WS, Andersson O, Row R, Kimelman D, Stainier DY. Suppression of Alk8-mediated Bmp signaling cell-autonomously induces pancreatic beta-cells in zebrafish. Proceedings of the National Academy of Sciences of the United States of America. 107: 1142-7. PMID 20080554 DOI: 10.1073/pnas.0910205107  1
2010 Smyth JW, Hong TT, Gao D, Vogan JM, Jensen BC, Fong TS, Simpson PC, Stainier DY, Chi NC, Shaw RM. Limited forward trafficking of connexin 43 reduces cell-cell coupling in stressed human and mouse myocardium. The Journal of Clinical Investigation. 120: 266-79. PMID 20038810 DOI: 10.1172/JCI39740  1
2009 Kawahara A, Stainier DY. Noncanonical activity of seryl-transfer RNA synthetase and vascular development. Trends in Cardiovascular Medicine. 19: 179-82. PMID 20211432 DOI: 10.1016/j.tcm.2009.11.001  1
2009 Lee CY, Vogeli KM, Kim SH, Chong SW, Jiang YJ, Stainier DY, Jin SW. Notch signaling functions as a cell-fate switch between the endothelial and hematopoietic lineages. Current Biology : Cb. 19: 1616-22. PMID 19747827 DOI: 10.1016/j.cub.2009.07.073  1
2009 Hesselson D, Anderson RM, Beinat M, Stainier DY. Distinct populations of quiescent and proliferative pancreatic beta-cells identified by HOTcre mediated labeling. Proceedings of the National Academy of Sciences of the United States of America. 106: 14896-901. PMID 19706417 DOI: 10.1073/Pnas.0906348106  1
2009 Anderson RM, Bosch JA, Goll MG, Hesselson D, Dong PD, Shin D, Chi NC, Shin CH, Schlegel A, Halpern M, Stainier DY. Loss of Dnmt1 catalytic activity reveals multiple roles for DNA methylation during pancreas development and regeneration. Developmental Biology. 334: 213-23. PMID 19631206 DOI: 10.1016/J.Ydbio.2009.07.017  1
2009 Santoro MM, Pesce G, Stainier DY. Characterization of vascular mural cells during zebrafish development. Mechanisms of Development. 126: 638-49. PMID 19539756 DOI: 10.1016/j.mod.2009.06.1080  1
2009 Huisken J, Stainier DY. Selective plane illumination microscopy techniques in developmental biology. Development (Cambridge, England). 136: 1963-75. PMID 19465594 DOI: 10.1242/dev.022426  1
2009 Aanstad P, Santos N, Corbit KC, Scherz PJ, Trinh le A, Salvenmoser W, Huisken J, Reiter JF, Stainier DY. The extracellular domain of Smoothened regulates ciliary localization and is required for high-level Hh signaling. Current Biology : Cb. 19: 1034-9. PMID 19464178 DOI: 10.1016/J.Cub.2009.04.053  1
2009 Goll MG, Anderson R, Stainier DY, Spradling AC, Halpern ME. Transcriptional silencing and reactivation in transgenic zebrafish. Genetics. 182: 747-55. PMID 19433629 DOI: 10.1534/genetics.109.102079  1
2009 Herzog W, Müller K, Huisken J, Stainier DY. Genetic evidence for a noncanonical function of seryl-tRNA synthetase in vascular development. Circulation Research. 104: 1260-6. PMID 19423847 DOI: 10.1161/CIRCRESAHA.108.191718  1
2009 de Jong-Curtain TA, Parslow AC, Trotter AJ, Hall NE, Verkade H, Tabone T, Christie EL, Crowhurst MO, Layton JE, Shepherd IT, Nixon SJ, Parton RG, Zon LI, Stainier DY, Lieschke GJ, et al. Abnormal nuclear pore formation triggers apoptosis in the intestinal epithelium of elys-deficient zebrafish. Gastroenterology. 136: 902-11. PMID 19073184 DOI: 10.1053/J.Gastro.2008.11.012  1
2008 De Val S, Chi NC, Meadows SM, Minovitsky S, Anderson JP, Harris IS, Ehlers ML, Agarwal P, Visel A, Xu SM, Pennacchio LA, Dubchak I, Krieg PA, Stainier DY, Black BL. Combinatorial regulation of endothelial gene expression by ets and forkhead transcription factors. Cell. 135: 1053-64. PMID 19070576 DOI: 10.1016/J.Cell.2008.10.049  1
2008 Osborne N, Brand-Arzamendi K, Ober EA, Jin SW, Verkade H, Holtzman NG, Yelon D, Stainier DY. The spinster homolog, two of hearts, is required for sphingosine 1-phosphate signaling in zebrafish. Current Biology : Cb. 18: 1882-8. PMID 19062281 DOI: 10.1016/j.cub.2008.10.061  1
2008 Morton SU, Scherz PJ, Cordes KR, Ivey KN, Stainier DY, Srivastava D. microRNA-138 modulates cardiac patterning during embryonic development. Proceedings of the National Academy of Sciences of the United States of America. 105: 17830-5. PMID 19004786 DOI: 10.1073/Pnas.0804673105  1
2008 Chung WS, Shin CH, Stainier DY. Bmp2 signaling regulates the hepatic versus pancreatic fate decision. Developmental Cell. 15: 738-48. PMID 19000838 DOI: 10.1016/J.Devcel.2008.08.019  1
2008 Sakaguchi TF, Sadler KC, Crosnier C, Stainier DY. Endothelial signals modulate hepatocyte apicobasal polarization in zebrafish. Current Biology : Cb. 18: 1565-71. PMID 18951027 DOI: 10.1016/J.Cub.2008.08.065  1
2008 Munson C, Huisken J, Bit-Avragim N, Kuo T, Dong PD, Ober EA, Verkade H, Abdelilah-Seyfried S, Stainier DY. Regulation of neurocoel morphogenesis by Pard6 gamma b. Developmental Biology. 324: 41-54. PMID 18817769 DOI: 10.1016/J.Ydbio.2008.08.033  1
2008 Fish JE, Santoro MM, Morton SU, Yu S, Yeh RF, Wythe JD, Ivey KN, Bruneau BG, Stainier DY, Srivastava D. miR-126 regulates angiogenic signaling and vascular integrity. Developmental Cell. 15: 272-84. PMID 18694566 DOI: 10.1016/J.Devcel.2008.07.008  1
2008 Curado S, Stainier DY, Anderson RM. Nitroreductase-mediated cell/tissue ablation in zebrafish: a spatially and temporally controlled ablation method with applications in developmental and regeneration studies. Nature Protocols. 3: 948-54. PMID 18536643 DOI: 10.1038/nprot.2008.58  1
2008 Dong PD, Provost E, Leach SD, Stainier DY. Graded levels of Ptf1a differentially regulate endocrine and exocrine fates in the developing pancreas. Genes & Development. 22: 1445-50. PMID 18519637 DOI: 10.1101/gad.1663208  1
2008 Chi NC, Shaw RM, Jungblut B, Huisken J, Ferrer T, Arnaout R, Scott I, Beis D, Xiao T, Baier H, Jan LY, Tristani-Firouzi M, Stainier DY. Genetic and physiologic dissection of the vertebrate cardiac conduction system. Plos Biology. 6: e109. PMID 18479184 DOI: 10.1371/journal.pbio.0060109  1
2008 Chung WS, Stainier DY. Intra-endodermal interactions are required for pancreatic beta cell induction. Developmental Cell. 14: 582-93. PMID 18410733 DOI: 10.1016/J.Devcel.2008.02.012  1
2008 Shin CH, Chung WS, Hong SK, Ober EA, Verkade H, Field HA, Huisken J, Stainier DY. Multiple roles for Med12 in vertebrate endoderm development. Developmental Biology. 317: 467-79. PMID 18394596 DOI: 10.1016/J.Ydbio.2008.02.031  0.48
2008 Chi NC, Shaw RM, De Val S, Kang G, Jan LY, Black BL, Stainier DY. Foxn4 directly regulates tbx2b expression and atrioventricular canal formation. Genes & Development. 22: 734-9. PMID 18347092 DOI: 10.1101/gad.1629408  1
2008 Scherz PJ, Huisken J, Sahai-Hernandez P, Stainier DY. High-speed imaging of developing heart valves reveals interplay of morphogenesis and function. Development (Cambridge, England). 135: 1179-87. PMID 18272595 DOI: 10.1242/Dev.010694  1
2007 Schlegel A, Stainier DY. Lessons from "lower" organisms: what worms, flies, and zebrafish can teach us about human energy metabolism. Plos Genetics. 3: e199. PMID 18081423 DOI: 10.1371/Journal.Pgen.0030199  1
2007 Santoro MM, Samuel T, Mitchell T, Reed JC, Stainier DY. Birc2 (cIap1) regulates endothelial cell integrity and blood vessel homeostasis. Nature Genetics. 39: 1397-402. PMID 17934460 DOI: 10.1038/ng.2007.8  1
2007 Huisken J, Stainier DY. Even fluorescence excitation by multidirectional selective plane illumination microscopy (mSPIM). Optics Letters. 32: 2608-10. PMID 17767321 DOI: 10.1364/OL.32.002608  1
2007 Bagnat M, Cheung ID, Mostov KE, Stainier DY. Genetic control of single lumen formation in the zebrafish gut. Nature Cell Biology. 9: 954-60. PMID 17632505 DOI: 10.1038/Ncb1621  1
2007 Arnaout R, Ferrer T, Huisken J, Spitzer K, Stainier DY, Tristani-Firouzi M, Chi NC. Zebrafish model for human long QT syndrome. Proceedings of the National Academy of Sciences of the United States of America. 104: 11316-21. PMID 17592134 DOI: 10.1073/pnas.0702724104  1
2007 Jin SW, Herzog W, Santoro MM, Mitchell TS, Frantsve J, Jungblut B, Beis D, Scott IC, D'Amico LA, Ober EA, Verkade H, Field HA, Chi NC, Wehman AM, Baier H, ... Stainier DY, et al. A transgene-assisted genetic screen identifies essential regulators of vascular development in vertebrate embryos. Developmental Biology. 307: 29-42. PMID 17531218 DOI: 10.1016/J.Ydbio.2007.03.526  1
2007 Shin D, Shin CH, Tucker J, Ober EA, Rentzsch F, Poss KD, Hammerschmidt M, Mullins MC, Stainier DY. Bmp and Fgf signaling are essential for liver specification in zebrafish. Development (Cambridge, England). 134: 2041-50. PMID 17507405 DOI: 10.1242/Dev.000281  0.44
2007 Scott IC, Masri B, D'Amico LA, Jin SW, Jungblut B, Wehman AM, Baier H, Audigier Y, Stainier DY. The g protein-coupled receptor agtrl1b regulates early development of myocardial progenitors. Developmental Cell. 12: 403-13. PMID 17336906 DOI: 10.1016/J.Devcel.2007.01.012  1
2007 Curado S, Anderson RM, Jungblut B, Mumm J, Schroeter E, Stainier DY. Conditional targeted cell ablation in zebrafish: a new tool for regeneration studies. Developmental Dynamics : An Official Publication of the American Association of Anatomists. 236: 1025-35. PMID 17326133 DOI: 10.1002/Dvdy.21100  1
2007 D'Amico L, Scott IC, Jungblut B, Stainier DYR. A Mutation in Zebrafish hmgcr1b Reveals a Role for Isoprenoids in Vertebrate Heart-Tube Formation Current Biology. 17: 252-259. PMID 17276918 DOI: 10.1016/j.cub.2006.12.023  1
2007 Dong PD, Munson CA, Norton W, Crosnier C, Pan X, Gong Z, Neumann CJ, Stainier DY. Fgf10 regulates hepatopancreatic ductal system patterning and differentiation. Nature Genetics. 39: 397-402. PMID 17259985 DOI: 10.1038/ng1961  1
2006 Schlegel A, Stainier DY. Microsomal triglyceride transfer protein is required for yolk lipid utilization and absorption of dietary lipids in zebrafish larvae. Biochemistry. 45: 15179-87. PMID 17176039 DOI: 10.1021/Bi0619268  1
2006 Curado S, Stainier DYR. The HeArt of Regeneration Cell. 127: 462-464. PMID 17081969 DOI: 10.1016/j.cell.2006.10.025  1
2006 Vogeli KM, Jin SW, Martin GR, Stainier DY. A common progenitor for haematopoietic and endothelial lineages in the zebrafish gastrula. Nature. 443: 337-9. PMID 16988712 DOI: 10.1038/nature05045  1
2006 Ober EA, Verkade H, Field HA, Stainier DY. Mesodermal Wnt2b signalling positively regulates liver specification. Nature. 442: 688-91. PMID 16799568 DOI: 10.1038/Nature04888  1
2006 Stainier D. No stem cell is an islet (yet) New England Journal of Medicine. 354: 521-523. PMID 16452566 DOI: 10.1056/Nejmcibr055048  1
2006 Beis D, Stainier DYR. In vivo cell biology: Following the zebrafish trend Trends in Cell Biology. 16: 105-112. PMID 16406520 DOI: 10.1016/j.tcb.2005.12.001  1
2005 Jin SW, Beis D, Mitchell T, Chen JN, Stainier DY. Cellular and molecular analyses of vascular tube and lumen formation in zebrafish. Development (Cambridge, England). 132: 5199-209. PMID 16251212 DOI: 10.1242/dev.02087  1
2005 Corbit KC, Aanstad P, Singla V, Norman AR, Stainier DY, Reiter JF. Vertebrate Smoothened functions at the primary cilium. Nature. 437: 1018-21. PMID 16136078 DOI: 10.1038/Nature04117  1
2005 Ng AN, de Jong-Curtain TA, Mawdsley DJ, White SJ, Shin J, Appel B, Dong PD, Stainier DY, Heath JK. Formation of the digestive system in zebrafish: III. Intestinal epithelium morphogenesis. Developmental Biology. 286: 114-35. PMID 16125164 DOI: 10.1016/J.Ydbio.2005.07.013  1
2005 Beis D, Bartman T, Jin SW, Scott IC, D'Amico LA, Ober EA, Verkade H, Frantsve J, Field HA, Wehman A, Baier H, Tallafuss A, Bally-Cuif L, Chen JN, Stainier DY, et al. Genetic and cellular analyses of zebrafish atrioventricular cushion and valve development. Development (Cambridge, England). 132: 4193-204. PMID 16107477 DOI: 10.1242/Dev.01970  1
2005 Bree RT, McLoughlin S, Jin SW, McMeel OM, Stainier DYR, Grealy M, Byrnes L. nanor, a novel zygotic gene, is expressed initially at the midblastula transition in zebrafish Biochemical and Biophysical Research Communications. 333: 722-728. PMID 15961062 DOI: 10.1016/j.bbrc.2005.05.168  1
2005 Qian F, Zhen F, Ong C, Jin SW, Soo HM, Stainier DYR, Lin S, Peng J, Wen Z. Microarray analysis of zebrafish cloche mutant using amplified cDNA and identification of potential downstream target genes Developmental Dynamics. 233: 1163-1172. PMID 15937927 DOI: 10.1002/dvdy.20444  1
2005 Stainier DYR. No organ left behind: Tales of gut development and evolution Science. 307: 1902-1904. PMID 15790841 DOI: 10.1126/science.1108709  1
2005 Trinh LA, Yelon D, Stainier DY. Hand2 regulates epithelial formation during myocardial diferentiation. Current Biology : Cb. 15: 441-6. PMID 15786591 DOI: 10.1016/j.cub.2004.12.083  1
2004 Trinh LA, Stainier DY. Cardiac development. Methods in Cell Biology. 76: 455-73. PMID 15602887  1
2004 Bartman T, Walsh EC, Wen KK, McKane M, Ren J, Alexander J, Rubenstein PA, Stainier DY. Early myocardial function affects endocardial cushion development in zebrafish. Plos Biology. 2: E129. PMID 15138499 DOI: 10.1371/Journal.Pbio.0020129  1
2004 Parker LH, Schmidt M, Jin SW, Gray AM, Beis D, Pham T, Frantz G, Palmieri S, Hillan K, Stainier DY, De Sauvage FJ, Ye W. The endothelial-cell-derived secreted factor Egfl7 regulates vascular tube formation. Nature. 428: 754-8. PMID 15085134 DOI: 10.1038/Nature02416  1
2004 Kikuchi Y, Verkade H, Reiter JF, Kim CH, Chitnis AB, Kuroiwa A, Stainier DY. Notch signaling can regulate endoderm formation in zebrafish. Developmental Dynamics : An Official Publication of the American Association of Anatomists. 229: 756-62. PMID 15042699 DOI: 10.1002/Dvdy.10483  1
2004 Trinh LA, Stainier DY. Fibronectin regulates epithelial organization during myocardial migration in zebrafish. Developmental Cell. 6: 371-82. PMID 15030760 DOI: 10.1016/S1534-5807(04)00063-2  1
2004 Reim G, Mizoguchi T, Stainier DY, Kikuchi Y, Brand M. The POU domain protein spg (pou2/Oct4) is essential for endoderm formation in cooperation with the HMG domain protein casanova. Developmental Cell. 6: 91-101. PMID 14723850 DOI: 10.1016/S1534-5807(03)00396-4  1
2004 Ober EA, Olofsson B, Mäkinen T, Jin SW, Shoji W, Koh GY, Alitalo K, Stainier DYR. Vegfc is required for vascular development and endoderm morphogenesis in zebrafish Embo Reports. 5: 78-84. PMID 14710191 DOI: 10.1038/Sj.Embor.7400047  1
2003 Horne-Badovinac S, Rebagliati M, Stainier DY. A cellular framework for gut-looping morphogenesis in zebrafish. Science (New York, N.Y.). 302: 662-5. PMID 14576439 DOI: 10.1126/Science.1085397  1
2003 Berdougo E, Coleman H, Lee DH, Stainier DY, Yelon D. Mutation of weak atrium/atrial myosin heavy chain disrupts atrial function and influences ventricular morphogenesis in zebrafish. Development (Cambridge, England). 130: 6121-9. PMID 14573521 DOI: 10.1242/dev.00838  1
2003 Scott IC, Stainier DYR. Twisting the body into shape Nature. 425: 461+463. PMID 14523426 DOI: 10.1038/425461a  1
2003 Field HA, Dong PD, Beis D, Stainier DY. Formation of the digestive system in zebrafish. II. Pancreas morphogenesis. Developmental Biology. 261: 197-208. PMID 12941629 DOI: 10.1016/S0012-1606(03)00308-7  1
2003 Trinh LA, Meyer D, Stainier DY. The Mix family homeodomain gene bonnie and clyde functions with other components of the Nodal signaling pathway to regulate neural patterning in zebrafish. Development (Cambridge, England). 130: 4989-98. PMID 12930774 DOI: 10.1242/Dev.00614  1
2003 Stainier DYR, Pourquié O. Entrails, heart, brain, limbs, and lymphatics - A recipe for success? Developmental Cell. 5: 193-196. PMID 12919671 DOI: 10.1016/S1534-5807(03)00241-7  1
2003 Tidyman WE, Sehnert AJ, Huq A, Agard J, Deegan F, Stainier DYR, Ordahl CP. In vivo regulation of the chicken cardiac troponin T gene promoter in zebrafish embryos Developmental Dynamics. 227: 484-496. PMID 12889057 DOI: 10.1002/dvdy.10328  1
2003 Field HA, Ober EA, Roeser T, Stainier DY. Formation of the digestive system in zebrafish. I. Liver morphogenesis. Developmental Biology. 253: 279-90. PMID 12645931 DOI: 10.1016/S0012-1606(02)00017-9  1
2003 Miller CT, Yelon D, Stainier DY, Kimmel CB. Two endothelin 1 effectors, hand2 and bapx1, pattern ventral pharyngeal cartilage and the jaw joint. Development (Cambridge, England). 130: 1353-65. PMID 12588851 DOI: 10.1242/Dev.00339  1
2003 Ober EA, Field HA, Stainier DY. From endoderm formation to liver and pancreas development in zebrafish. Mechanisms of Development. 120: 5-18. PMID 12490292 DOI: 10.1016/S0925-4773(02)00327-1  1
2003 Osborne N, Stainier DYR. Lipid Receptors in Cardiovascular Development Annual Review of Physiology. 65: 23-43. PMID 12471161 DOI: 10.1146/annurev.physiol.65.092101.142235  1
2002 Stainier DYR, Beis D, Jungblut B, Bartman T. Endocardial cushion formation in zebrafish Cold Spring Harbor Symposia On Quantitative Biology. 67: 49-56. PMID 12858523  1
2002 Dehal P, Satou Y, Campbell RK, Chapman J, Degnan B, De Tomaso A, Davidson B, Di Gregorio A, Gelpke M, Goodstein DM, Harafuji N, Hastings KE, Ho I, Hotta K, Huang W, ... ... Stainier D, et al. The draft genome of Ciona intestinalis: insights into chordate and vertebrate origins. Science (New York, N.Y.). 298: 2157-67. PMID 12481130 DOI: 10.1126/Science.1080049  1
2002 Scott IC, Stainier DYR. Development: Fishing out a new heart Science. 298: 2141-2142. PMID 12481123 DOI: 10.1126/science.1079821  1
2002 Yelon D, Stainier DYR. Pattern formation: Swimming in retinoic acid Current Biology. 12: R707-R709. PMID 12401191 DOI: 10.1016/S0960-9822(02)01213-7  1
2002 Warga RM, Stainier DY. The guts of endoderm formation Results and Problems in Cell Differentiation. 40: 28-47. PMID 12353482  1
2002 Sehnert AJ, Stainier DYR. A window to the heart: Can zebrafish mutants help us understand heart disease in humans? Trends in Genetics. 18: 491-494. PMID 12350332 DOI: 10.1016/S0168-9525(02)02766-X  1
2002 Sehnert AJ, Huq A, Weinstein BM, Walker C, Fishman M, Stainier DY. Cardiac troponin T is essential in sarcomere assembly and cardiac contractility. Nature Genetics. 31: 106-10. PMID 11967535 DOI: 10.1038/Ng875  1
2002 Stainier DYR. A glimpse into the molecular entrails of endoderm formation Genes and Development. 16: 893-907. PMID 11959838 DOI: 10.1101/gad.974902  1
2002 Keegan BR, Feldman JL, Lee DH, Koos DS, Ho RK, Stainier DY, Yelon D. The elongation factors Pandora/Spt6 and Foggy/Spt5 promote transcription in the zebrafish embryo. Development (Cambridge, England). 129: 1623-32. PMID 11923199  1
2002 Stainier DYR. Zebrafish and molecular genetic studies of heart development | Contribution du poisson zèbre à l'étude moléculaire du développement du cœur des vertébrés Medecine/Sciences. 18: 448-456.  1
2001 Horne-Badovinac S, Lin D, Waldron S, Schwarz M, Mbamalu G, Pawson T, Jan YN, Stainier DYR, Abdelilah-Seyfried S. Positional cloning of heart and soul reveals multiple roles for PKCλ in zebrafish organogenesis Current Biology. 11: 1492-1502. PMID 11591316 DOI: 10.1016/S0960-9822(01)00458-4  1
2001 Walsh EC, Stainier DY. UDP-glucose dehydrogenase required for cardiac valve formation in zebrafish. Science (New York, N.Y.). 293: 1670-3. PMID 11533493 DOI: 10.1126/Science.293.5535.1670  1
2001 Kikuchi Y, Agathon A, Alexander J, Thisse C, Waldron S, Yelon D, Thisse B, Stainier DYR. casanova encodes a novel Sox-related protein necessary and sufficient for early endoderm formation in zebrafish Genes and Development. 15: 1493-1505. PMID 11410530 DOI: 10.1101/gad.892301  1
2001 Reiter JF, Verkade H, Stainier DYR. Bmp2b and Oep promote early myocardial differentiation through their regulation of gata5 Developmental Biology. 234: 330-338. PMID 11397003 DOI: 10.1006/Dbio.2001.0259  1
2001 Stainier DYR. Zebrafish genetics and vertebrate heart formation Nature Reviews Genetics. 2: 39-48. PMID 11253067 DOI: 10.1038/35047564  1
2001 Reiter JF, Kikuchi Y, Stainier DYR. Multiple roles for Gata5 in zebrafish endoderm formation Development. 128: 125-135. PMID 11092818  1
2000 Motoike T, Loughna S, Perens E, Roman BL, Liao W, Chau TC, Richardson CD, Kawate T, Kuno J, Weinstein BM, Stainier DYR, Sato TN. Universal GFP reporter for the study of vascular development Genesis. 28: 75-81. PMID 11064424 DOI: 10.1002/1526-968X(200010)28:2<75::AID-GENE50>3.0.CO;2-S  1
2000 Liao W, Ho CY, Yan YL, Postlethwait J, Stainier DY. Hhex and scl function in parallel to regulate early endothelial and blood differentiation in zebrafish. Development (Cambridge, England). 127: 4303-13. PMID 11003831  1
2000 Kupperman E, An S, Osborne N, Waldron S, Stainier DYR. A sphingosine-1-phosphate receptor regulates cell migration during vertebrate heart development Nature. 406: 192-195. PMID 10910360 DOI: 10.1038/35018092  1
2000 Yelon D, Ticho B, Halpern ME, Ruvinsky I, Ho RK, Silver LM, Stainier DY. The bHLH transcription factor hand2 plays parallel roles in zebrafish heart and pectoral fin development. Development (Cambridge, England). 127: 2573-82. PMID 10821756  1
2000 Kikuchi Y, Trinh LA, Reiter JF, Alexander J, Yelon D, Stainier DY. The zebrafish bonnie and clyde gene encodes a Mix family homeodomain protein that regulates the generation of endodermal precursors. Genes & Development. 14: 1279-89. PMID 10817762 DOI: 10.1101/Gad.14.10.1279  1
2000 Griffin KJP, Stoller J, Gibson M, Chen S, Yelon D, Stainier DYR, Kimelman D. A conserved role for H15-related T-box transcription factors in zebrafish and Drosophila heart formation Developmental Biology. 218: 235-247. PMID 10656766 DOI: 10.1006/Dbio.1999.9571  1
2000 Reifers F, Walsh EC, Léger S, Stainier DY, Brand M. Induction and differentiation of the zebrafish heart requires fibroblast growth factor 8 (fgf8/acerebellar). Development (Cambridge, England). 127: 225-35. PMID 10603341  1
1999 Reiter JF, Alexander J, Rodaway A, Yelon D, Patient R, Holder N, Stainier DY. Gata5 is required for the development of the heart and endoderm in zebrafish. Genes & Development. 13: 2983-95. PMID 10580005 DOI: 10.1101/Gad.13.22.2983  1
1999 Alexander J, Rothenberg M, Henry GL, Stainier DY. casanova plays an early and essential role in endoderm formation in zebrafish. Developmental Biology. 215: 343-57. PMID 10545242 DOI: 10.1006/Dbio.1999.9441  1
1999 Alexander J, Stainier DYR. A molecular pathway leading to endoderm formation in zebrafish Current Biology. 9: 1147-1157. PMID 10531029 DOI: 10.1016/S0960-9822(00)80016-0  1
1999 Ho CY, Houart C, Wilson SW, Stainier DY. A role for the extraembryonic yolk syncytial layer in patterning the zebrafish embryo suggested by properties of the hex gene. Current Biology : Cb. 9: 1131-4. PMID 10531010 DOI: 10.1016/S0960-9822(99)80485-0  1
1999 Yelon D, Horne SA, Stainier DY. Restricted expression of cardiac myosin genes reveals regulated aspects of heart tube assembly in zebrafish. Developmental Biology. 214: 23-37. PMID 10491254 DOI: 10.1006/dbio.1999.9406  1
1999 Yelon D, Stainier DYR. Patterning during organogenesis: Genetic analysis of cardiac chamber formation Seminars in Cell and Developmental Biology. 10: 93-98. PMID 10355033 DOI: 10.1006/SCDB.1998.0278  1
1999 Parker L, Stainier DYR. Cell-autonomous and non-autonomous requirements for the zebrafish gene cloche in hematopoiesis Development. 126: 2643-2651. PMID 10331976  1
1999 Parker LH, Zon LI, Stainier DYR. Vascular and blood gene expression Methods in Cell Biology. 313-336. PMID 9891367 DOI: 10.1016/S0091-679X(08)61832-4  1
1998 Karlovich CA, John RM, Ramirez L, Stainier DYR, Myers RM. Characterization of the Huntington's disease (HD) gene homolog in the zebrafish Danio rerio Gene. 217: 117-125. PMID 9795179 DOI: 10.1016/S0378-1119(98)00342-4  1
1998 Alexander J, Stainier DYR, Yelon D. Screening mosaic F1 females for mutations affecting zebrafish heart induction and patterning Developmental Genetics. 22: 288-299. PMID 9621435 DOI: 10.1002/(SICI)1520-6408(1998)22:3<288::AID-DVG10>3.0.CO;2-2  1
1998 Reifers F, Böhli H, Walsh EC, Crossley PH, Stainier DY, Brand M. Fgf8 is mutated in zebrafish acerebellar (ace) mutants and is required for maintenance of midbrain-hindbrain boundary development and somitogenesis. Development (Cambridge, England). 125: 2381-95. PMID 9609821  1
1998 Lyons MS, Bell B, Stainier D, Peters KG. Isolation of the zebrafish homologues for the tie-1 and tie-2 endothelium-specific receptor tyrosine kinases Developmental Dynamics. 212: 133-140. PMID 9603430 DOI: 10.1002/(Sici)1097-0177(199805)212:1<133::Aid-Aja12>3.0.Co;2-8  1
1998 Haun C, Alexander J, Stainier DY, Okkema PG. Rescue of Caenorhabditis elegans pharyngeal development by a vertebrate heart specification gene Proceedings of the National Academy of Sciences of the United States of America. 95: 5072-5075. PMID 9560230 DOI: 10.1073/pnas.95.9.5072  1
1997 Fishman MC, Stainier DY, Breitbart RE, Westerfield M. Zebrafish: genetic and embryological methods in a transparent vertebrate embryo. Methods in Cell Biology. 52: 67-82. PMID 9379966 DOI: 10.1016/S0091-679X(08)60374-X  1
1997 Liao W, Bisgrove BW, Sawyer H, Hug B, Bell B, Peters K, Grunwald DJ, Stainier DY. The zebrafish gene cloche acts upstream of a flk-1 homologue to regulate endothelial cell differentiation. Development (Cambridge, England). 124: 381-9. PMID 9053314  1
1996 Neuhauss SC, Solnica-Krezel L, Schier AF, Zwartkruis F, Stemple DL, Malicki J, Abdelilah S, Stainier DY, Driever W. Mutations affecting craniofacial development in zebrafish. Development (Cambridge, England). 123: 357-67. PMID 9007255 DOI: 10.5167/Uzh-228  1
1996 Weinstein BM, Schier AF, Abdelilah S, Malicki J, Solnica-Krezel L, Stemple DL, Stainier DY, Zwartkruis F, Driever W, Fishman MC. Hematopoietic mutations in the zebrafish. Development (Cambridge, England). 123: 303-9. PMID 9007250  1
1996 Stainier DY, Fouquet B, Chen JN, Warren KS, Weinstein BM, Meiler SE, Mohideen MA, Neuhauss SC, Solnica-Krezel L, Schier AF, Zwartkruis F, Stemple DL, Malicki J, Driever W, Fishman MC. Mutations affecting the formation and function of the cardiovascular system in the zebrafish embryo. Development (Cambridge, England). 123: 285-92. PMID 9007248 DOI: 10.5167/Uzh-237  1
1996 Malicki J, Schier AF, Solnica-Krezel L, Stemple DL, Neuhauss SC, Stainier DY, Abdelilah S, Rangini Z, Zwartkruis F, Driever W. Mutations affecting development of the zebrafish ear. Development (Cambridge, England). 123: 275-83. PMID 9007247  1
1996 Malicki J, Neuhauss SC, Schier AF, Solnica-Krezel L, Stemple DL, Stainier DY, Abdelilah S, Zwartkruis F, Rangini Z, Driever W. Mutations affecting development of the zebrafish retina. Development (Cambridge, England). 123: 263-73. PMID 9007246  1
1996 Abdelilah S, Mountcastle-Shah E, Harvey M, Solnica-Krezel L, Schier AF, Stemple DL, Malicki J, Neuhauss SC, Zwartkruis F, Stainier DY, Rangini Z, Driever W. Mutations affecting neural survival in the zebrafish Danio rerio. Development (Cambridge, England). 123: 217-27. PMID 9007242  1
1996 Schier AF, Neuhauss SC, Harvey M, Malicki J, Solnica-Krezel L, Stainier DY, Zwartkruis F, Abdelilah S, Stemple DL, Rangini Z, Yang H, Driever W. Mutations affecting the development of the embryonic zebrafish brain. Development (Cambridge, England). 123: 165-78. PMID 9007238 DOI: 10.5167/Uzh-232  1
1996 Stemple DL, Solnica-Krezel L, Zwartkruis F, Neuhauss SC, Schier AF, Malicki J, Stainier DY, Abdelilah S, Rangini Z, Mountcastle-Shah E, Driever W. Mutations affecting development of the notochord in zebrafish. Development (Cambridge, England). 123: 117-28. PMID 9007234 DOI: 10.5167/Uzh-238  1
1996 Solnica-Krezel L, Stemple DL, Mountcastle-Shah E, Rangini Z, Neuhauss SC, Malicki J, Schier AF, Stainier DY, Zwartkruis F, Abdelilah S, Driever W. Mutations affecting cell fates and cellular rearrangements during gastrulation in zebrafish. Development (Cambridge, England). 123: 67-80. PMID 9007230  1
1996 Driever W, Solnica-Krezel L, Schier AF, Neuhauss SC, Malicki J, Stemple DL, Stainier DY, Zwartkruis F, Abdelilah S, Rangini Z, Belak J, Boggs C. A genetic screen for mutations affecting embryogenesis in zebrafish. Development (Cambridge, England). 123: 37-46. PMID 9007227 DOI: 10.5167/Uzh-215  1
1996 Ticho BS, Stainier DY, Fishman MC, Breitbart RE. Three zebrafish MEF2 genes delineate somitic and cardiac muscle development in wild-type and mutant embryos. Mechanisms of Development. 59: 205-18. PMID 8951797 DOI: 10.1016/0925-4773(96)00601-6  1
1994 Abdelilah S, Solnica-Krezel L, Stainier DY, Driever W. Implications for dorsoventral axis determination from the zebrafish mutation janus. Nature. 370: 468-71. PMID 8047167 DOI: 10.1038/370468A0  1
1993 Stainier DY, Lee RK, Fishman MC. Cardiovascular development in the zebrafish. I. Myocardial fate map and heart tube formation. Development (Cambridge, England). 119: 31-40. PMID 8275863  1
1991 Stainier DY, Bilder DH, Gilbert W. The B30 ganglioside is a cell surface marker for neural crest-derived neurons in the developing mouse. Developmental Biology. 144: 177-88. PMID 1995396 DOI: 10.1016/0012-1606(91)90489-P  1
1991 Stainier DY, Bilder DH, Gilbert W. Spatial domains in the developing forebrain: developmental regulation of a restricted cell surface protein. Developmental Biology. 147: 22-31. PMID 1879609 DOI: 10.1016/S0012-1606(05)80004-1  1
1991 Stainier DY, Gilbert W. Neuronal differentiation and maturation in the mouse trigeminal sensory system, in vivo and in vitro. The Journal of Comparative Neurology. 311: 300-12. PMID 1753021 DOI: 10.1002/Cne.903110210  1
1990 Stainier DY, Gilbert W. Pioneer neurons in the mouse trigeminal sensory system. Proceedings of the National Academy of Sciences of the United States of America. 87: 923-7. PMID 2300585 DOI: 10.1073/Pnas.87.3.923  1
1989 Stainier DY, Gilbert W. The monoclonal antibody B30 recognizes a specific neuronal cell surface antigen in the developing mesencephalic trigeminal nucleus of the mouse. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 9: 2468-85. PMID 2473175 DOI: 10.1523/Jneurosci.09-07-02468.1989  1
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