Didier Stainier, PhD - Publications

Affiliations: 
University of California, San Francisco, San Francisco, CA 

150 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Juan T, Bellec M, Cardoso B, Athéa H, Fukuda N, Albu M, Günther S, Looso M, Stainier DYR. Control of cardiac contractions using Cre-lox and degron strategies in zebrafish. Proceedings of the National Academy of Sciences of the United States of America. 121: e2309842121. PMID 38194447 DOI: 10.1073/pnas.2309842121  0.356
2023 Juan T, Ribeiro da Silva A, Cardoso B, Lim S, Charteau V, Stainier DYR. Multiple pkd and piezo gene family members are required for atrioventricular valve formation. Nature Communications. 14: 214. PMID 36639367 DOI: 10.1038/s41467-023-35843-3  0.306
2022 Boezio GLM, Zhao S, Gollin J, Priya R, Mansingh S, Guenther S, Fukuda N, Gunawan F, Stainier DYR. The developing epicardium regulates cardiac chamber morphogenesis by promoting cardiomyocyte growth. Disease Models & Mechanisms. PMID 36172839 DOI: 10.1242/dmm.049571  0.377
2021 Sarvari P, Rasouli SJ, Allanki S, Stone OA, Sokol A, Graumann J, Stainier DYR. The E3 ubiquitin-protein ligase Rbx1 regulates cardiac wall morphogenesis in zebrafish. Developmental Biology. PMID 34363825 DOI: 10.1016/j.ydbio.2021.07.019  0.365
2021 Ando K, Shih YH, Ebarasi L, Grosse A, Portman D, Chiba A, Mattonet K, Gerri C, Stainier DYR, Mochizuki N, Fukuhara S, Betsholtz C, Lawson ND. Conserved and context-dependent roles for pdgfrb signaling during zebrafish vascular mural cell development. Developmental Biology. PMID 34310924 DOI: 10.1016/j.ydbio.2021.06.010  0.31
2021 Gentile A, Bensimon-Brito A, Priya R, Maischein HM, Piesker J, Guenther S, Gunawan F, Stainier DY. The EMT transcription factor Snai1 maintains myocardial wall integrity by repressing intermediate filament gene expression. Elife. 10. PMID 34152269 DOI: 10.7554/eLife.66143  0.374
2021 Gentile A, Bensimon-Brito A, Priya R, Maischein HM, Piesker J, Guenther S, Gunawan F, Stainier DY. The EMT transcription factor Snai1 maintains myocardial wall integrity by repressing intermediate filament gene expression. Elife. 10. PMID 34152269 DOI: 10.7554/eLife.66143  0.374
2021 Gunawan F, Priya R, Stainier DYR. Sculpting the heart: Cellular mechanisms shaping valves and trabeculae. Current Opinion in Cell Biology. 73: 26-34. PMID 34147705 DOI: 10.1016/j.ceb.2021.04.009  0.3
2021 Gunawan F, Priya R, Stainier DYR. Sculpting the heart: Cellular mechanisms shaping valves and trabeculae. Current Opinion in Cell Biology. 73: 26-34. PMID 34147705 DOI: 10.1016/j.ceb.2021.04.009  0.3
2021 Boskovic S, Marín Juez R, Stamenkovic N, Radojkovic D, Stainier DY, Kojic S. The stress responsive gene ankrd1a is dynamically regulated during skeletal muscle development and upregulated following cardiac injury in border zone cardiomyocytes in adult zebrafish. Gene. 792: 145725. PMID 34010705 DOI: 10.1016/j.gene.2021.145725  0.758
2020 Mukherjee D, Wagh G, Mokalled MH, Kontarakis Z, Dickson AL, Rayrikar A, Günther S, Poss KD, Stainier DYR, Patra C. Ccn2a/Ctgfa is an injury-induced matricellular factor that promotes cardiac regeneration in zebrafish. Development (Cambridge, England). PMID 33234717 DOI: 10.1242/dev.193219  0.315
2020 Priya R, Allanki S, Gentile A, Mansingh S, Uribe V, Maischein HM, Stainier DYR. Tension heterogeneity directs form and fate to pattern the myocardial wall. Nature. PMID 33208950 DOI: 10.1038/s41586-020-2946-9  0.307
2020 Carlantoni C, Allanki S, Kontarakis Z, Rossi A, Piesker J, Günther S, Stainier DYR. Tie1 regulates zebrafish cardiac morphogenesis through tolloid-like 1 expression. Developmental Biology. PMID 32971120 DOI: 10.1016/j.ydbio.2020.09.008  0.413
2020 Sidhwani P, Leerberg DM, Boezio GLM, Capasso TL, Yang H, Chi NC, Roman BL, Stainier DYR, Yelon D. Cardiac function modulates endocardial cell dynamics to shape the cardiac outflow tract. Development (Cambridge, England). PMID 32439760 DOI: 10.1242/Dev.185900  0.671
2020 Beisaw A, Kuenne C, Günther S, Dallmann J, Wu CC, Bentsen M, Looso M, Stainier D. AP-1 Contributes to Chromatin Accessibility to Promote Sarcomere Disassembly and Cardiomyocyte Protrusion during Zebrafish Heart Regeneration. Circulation Research. PMID 32312172 DOI: 10.1161/CIRCRESAHA.119.316167  0.314
2020 Gunawan F, Gentile A, Gauvrit S, Stainier D, Bensimon-Brito A. Nfatc1 Promotes Interstitial Cell Formation During Cardiac Valve Development in Zebrafish. Circulation Research. PMID 32070236 DOI: 10.1161/CIRCRESAHA.119.315992  0.345
2019 Collins MM, Ahlberg G, Hansen CV, Guenther S, Marín-Juez R, Sokol AM, El-Sammak H, Piesker J, Hellsten Y, Olesen MS, Stainier DYR, Lundegaard PR. Early sarcomere and metabolic defects in a zebrafish cardiac arrhythmia model. Proceedings of the National Academy of Sciences of the United States of America. PMID 31704768 DOI: 10.1073/pnas.1913905116  0.309
2019 Gancz D, Raftrey BC, Perlmoter G, Marín-Juez R, Semo J, Matsuoka RL, Karra R, Raviv H, Moshe N, Addadi Y, Golani O, Poss KD, Red-Horse K, Stainier DY, Yaniv K. Distinct origins and molecular mechanisms contribute to lymphatic formation during cardiac growth and regeneration. Elife. 8. PMID 31702554 DOI: 10.7554/Elife.44153  0.338
2019 Villasenor A, Gauvrit S, Collins MM, Maischein HM, Stainier DYR. Hhex regulates the specification and growth of the hepatopancreatic ductal system. Developmental Biology. PMID 31697936 DOI: 10.1016/j.ydbio.2019.10.021  0.31
2019 Jiménez-Amilburu V, Stainier DYR. The transmembrane protein Crb2a regulates cardiomyocyte apicobasal polarity and adhesion in zebrafish. Development (Cambridge, England). PMID 30992276 DOI: 10.1242/dev.171207  0.358
2018 Rasouli SJ, El-Brolosy M, Tsedeke AT, Bensimon-Brito A, Ghanbari P, Maischein HM, Kuenne C, Stainier DY. The flow responsive transcription factor Klf2 is required for myocardial wall integrity by modulating Fgf signaling. Elife. 7. PMID 30592462 DOI: 10.7554/eLife.38889  0.387
2018 Eubelen M, Bostaille N, Cabochette P, Gauquier A, Tebabi P, Dumitru AC, Koehler M, Gut P, Alsteens D, Stainier DYR, Garcia-Pino A, Vanhollebeke B. A molecular mechanism for Wnt ligand-specific signaling. Science (New York, N.Y.). PMID 30026314 DOI: 10.3389/Conf.Fnins.2018.95.00097  0.338
2018 Gauvrit S, Villasenor A, Strilic B, Kitchen P, Collins MM, Marín-Juez R, Guenther S, Maischein HM, Fukuda N, Canham MA, Brickman JM, Bogue CW, Jayaraman PS, Stainier DYR. HHEX is a transcriptional regulator of the VEGFC/FLT4/PROX1 signaling axis during vascular development. Nature Communications. 9: 2704. PMID 30006544 DOI: 10.1038/s41467-018-05039-1  0.303
2018 Astone M, Lai JKH, Dupont S, Stainier DYR, Argenton F, Vettori A. Zebrafish mutants and TEAD reporters reveal essential functions for Yap and Taz in posterior cardinal vein development. Scientific Reports. 8: 10189. PMID 29976931 DOI: 10.1038/s41598-018-27657-x  0.36
2018 Collins MM, Maischein HM, Dufourcq P, Charpentier M, Blader P, Stainier DY. Pitx2c orchestrates embryonic axis extension via mesendodermal cell migration. Elife. 7. PMID 29952749 DOI: 10.7554/Elife.34880  0.361
2018 Lai JKH, Collins MM, Uribe V, Jiménez-Amilburu V, Günther S, Maischein HM, Stainier DYR. The Hippo pathway effector Wwtr1 regulates cardiac wall maturation in zebrafish. Development (Cambridge, England). 145. PMID 29773645 DOI: 10.1242/dev.159210  0.351
2018 Guerra A, Germano RF, Stone O, Arnaout R, Guenther S, Ahuja S, Uribe V, Vanhollebeke B, Stainier DY, Reischauer S. Distinct myocardial lineages break atrial symmetry during cardiogenesis in zebrafish. Elife. 7. PMID 29762122 DOI: 10.7554/Elife.32833  0.345
2018 Reischauer S, Stone OA, Villasenor A, Chi N, Jin SW, Martin M, Lee MT, Fukuda N, Marass M, Witty A, Fiddes I, Kuo T, Chung WS, Salek S, Lerrigo R, ... ... Stainier DYR, et al. Corrigendum: Cloche is a bHLH-PAS transcription factor that drives haemato-vascular specification. Nature. 555: 543. PMID 29565360 DOI: 10.1038/Nature25991  0.415
2017 Kimelman D, Smith NL, Lai JKH, Stainier DY. Regulation of posterior body and epidermal morphogenesis in Zebrafish by localized Yap1 and Wwtr1. Elife. 6. PMID 29283341 DOI: 10.7554/Elife.31065  0.305
2017 Sawamiphak S, Kontarakis Z, Filosa A, Reischauer S, Stainier DYR. Transient cardiomyocyte fusion regulates cardiac development in zebrafish. Nature Communications. 8: 1525. PMID 29142194 DOI: 10.1038/s41467-017-01555-8  0.353
2017 Stainier DYR, Raz E, Lawson ND, Ekker SC, Burdine RD, Eisen JS, Ingham PW, Schulte-Merker S, Yelon D, Weinstein BM, Mullins MC, Wilson SW, Ramakrishnan L, Amacher SL, Neuhauss SCF, et al. Guidelines for morpholino use in zebrafish. Plos Genetics. 13: e1007000. PMID 29049395 DOI: 10.1371/Journal.Pgen.1007000  0.539
2017 Patra C, Kontarakis Z, Kaur H, Rayrikar A, Mukherjee D, Stainier DYR. The zebrafish ventricle: A hub of cardiac endothelial cells for in vitro cell behavior studies. Scientific Reports. 7: 2687. PMID 28578380 DOI: 10.1038/s41598-017-02461-1  0.315
2017 Rasouli SJ, Stainier DYR. Regulation of cardiomyocyte behavior in zebrafish trabeculation by Neuregulin 2a signaling. Nature Communications. 8: 15281. PMID 28485381 DOI: 10.1038/ncomms15281  0.311
2017 Fukuda R, Gunawan F, Beisaw A, Jimenez-Amilburu V, Maischein HM, Kostin S, Kawakami K, Stainier DY. Proteolysis regulates cardiomyocyte maturation and tissue integration. Nature Communications. 8: 14495. PMID 28211472 DOI: 10.1038/Ncomms14495  0.316
2017 Witzel HR, Cheedipudi S, Gao R, Stainier DY, Dobreva GD. Isl2b regulates anterior second heart field development in zebrafish. Scientific Reports. 7: 41043. PMID 28106108 DOI: 10.1038/srep41043  0.376
2016 Reade A, Motta-Mena LB, Gardner KH, Stainier DY, Weiner OD, Woo S. TAEL: A zebrafish-optimized optogenetic gene expression system with fine spatial and temporal control. Development (Cambridge, England). PMID 27993986 DOI: 10.1242/Dev.139238  0.761
2016 Jiménez-Amilburu V, Rasouli SJ, Staudt DW, Nakajima H, Chiba A, Mochizuki N, Stainier DY. In Vivo Visualization of Cardiomyocyte Apicobasal Polarity Reveals Epithelial to Mesenchymal-like Transition during Cardiac Trabeculation. Cell Reports. 17: 2687-2699. PMID 27926871 DOI: 10.1016/J.Celrep.2016.11.023  0.804
2016 Marín-Juez R, Marass M, Gauvrit S, Rossi A, Lai SL, Materna SC, Black BL, Stainier DY. Fast revascularization of the injured area is essential to support zebrafish heart regeneration. Proceedings of the National Academy of Sciences of the United States of America. PMID 27647901 DOI: 10.1073/Pnas.1605431113  0.356
2016 Reischauer S, Stone OA, Villasenor A, Chi N, Jin SW, Martin M, Lee MT, Fukuda N, Marass M, Witty A, Fiddes I, Kuo T, Chung WS, Salek S, Lerrigo R, ... ... Stainier DY, et al. Cloche is a bHLH-PAS transcription factor that drives haemato-vascular specification. Nature. 535: 294-8. PMID 27411634 DOI: 10.1038/Nature18614  0.562
2016 Collins MM, Stainier DY. Organ Function as a Modulator of Organ Formation: Lessons from Zebrafish. Current Topics in Developmental Biology. 117: 417-33. PMID 26969993 DOI: 10.1016/bs.ctdb.2015.10.017  0.302
2016 Ahuja S, Dogra D, Stainier DY, Reischauer S. Id4 functions downstream of Bmp signaling to restrict TCF function in endocardial cells during atrioventricular valve development. Developmental Biology. PMID 26892463 DOI: 10.1016/j.ydbio.2016.02.003  0.362
2015 Samsa LA, Givens C, Tzima E, Stainier DY, Qian L, Liu J. Cardiac contraction activates endocardial Notch signaling to modulate chamber maturation in zebrafish. Development (Cambridge, England). 142: 4080-91. PMID 26628092 DOI: 10.1242/dev.125724  0.366
2015 Palencia-Desai S, Rost MS, Schumacher JA, Ton QV, Craig MP, Baltrunaite K, Koenig AL, Wang J, Poss KD, Chi NC, Stainier DY, Sumanas S. Myocardium and BMP signaling are required for endocardial differentiation. Development (Cambridge, England). PMID 26092845 DOI: 10.1242/Dev.118687  0.39
2014 Markmiller S, Cloonan N, Lardelli RM, Doggett K, Keightley MC, Boglev Y, Trotter AJ, Ng AY, Wilkins SJ, Verkade H, Ober EA, Field HA, Grimmond SM, Lieschke GJ, Stainier DY, et al. Minor class splicing shapes the zebrafish transcriptome during development. Proceedings of the National Academy of Sciences of the United States of America. 111: 3062-7. PMID 24516132 DOI: 10.1073/Pnas.1305536111  0.791
2014 Staudt DW, Liu J, Thorn KS, Stuurman N, Liebling M, Stainier DY. High-resolution imaging of cardiomyocyte behavior reveals two distinct steps in ventricular trabeculation. Development (Cambridge, England). 141: 585-93. PMID 24401373 DOI: 10.1242/Dev.098632  0.812
2013 Zhang R, Han P, Yang H, Ouyang K, Lee D, Lin YF, Ocorr K, Kang G, Chen J, Stainier DY, Yelon D, Chi NC. In vivo cardiac reprogramming contributes to zebrafish heart regeneration. Nature. 498: 497-501. PMID 23783515 DOI: 10.1038/Nature12322  0.77
2013 Lancman JJ, Zvenigorodsky N, Gates KP, Zhang D, Solomon K, Humphrey RK, Kuo T, Setiawan L, Verkade H, Chi YI, Jhala US, Wright CV, Stainier DY, Dong PD. Specification of hepatopancreas progenitors in zebrafish by hnf1ba and wnt2bb. Development (Cambridge, England). 140: 2669-79. PMID 23720049 DOI: 10.1242/dev.090993  0.335
2013 Boglev Y, Badrock AP, Trotter AJ, Du Q, Richardson EJ, Parslow AC, Markmiller SJ, Hall NE, de Jong-Curtain TA, Ng AY, Verkade H, Ober EA, Field HA, Shin D, Shin CH, ... ... Stainier DY, et al. Autophagy induction is a Tor- and Tp53-independent cell survival response in a zebrafish model of disrupted ribosome biogenesis. Plos Genetics. 9: e1003279. PMID 23408911 DOI: 10.1371/Journal.Pgen.1003279  0.788
2012 Staudt D, Stainier D. Uncovering the molecular and cellular mechanisms of heart development using the zebrafish. Annual Review of Genetics. 46: 397-418. PMID 22974299 DOI: 10.1146/Annurev-Genet-110711-155646  0.817
2012 Woo S, Housley MP, Weiner OD, Stainier DY. Nodal signaling regulates endodermal cell motility and actin dynamics via Rac1 and Prex1. The Journal of Cell Biology. 198: 941-52. PMID 22945937 DOI: 10.1083/Jcb.201203012  0.769
2012 Mellman K, Huisken J, Dinsmore C, Hoppe C, Stainier DY. Fibrillin-2b regulates endocardial morphogenesis in zebrafish. Developmental Biology. 372: 111-9. PMID 22841646 DOI: 10.1016/J.Ydbio.2012.07.015  0.82
2012 Delous M, Yin C, Shin D, Ninov N, Debrito Carten J, Pan L, Ma TP, Farber SA, Moens CB, Stainier DY. Sox9b is a key regulator of pancreaticobiliary ductal system development. Plos Genetics. 8: e1002754. PMID 22719264 DOI: 10.1371/Journal.Pgen.1002754  0.394
2012 Liu J, Stainier DY. Zebrafish in the study of early cardiac development. Circulation Research. 110: 870-4. PMID 22427324 DOI: 10.1161/CIRCRESAHA.111.246504  0.349
2012 Shin D, Weidinger G, Moon RT, Stainier DY. Intrinsic and extrinsic modifiers of the regulative capacity of the developing liver. Mechanisms of Development. 128: 525-35. PMID 22313811 DOI: 10.1016/J.Mod.2012.01.005  0.303
2012 Kirchmaier BC, Poon KL, Schwerte T, Huisken J, Winkler C, Jungblut B, Stainier DY, Brand T. The Popeye domain containing 2 (popdc2) gene in zebrafish is required for heart and skeletal muscle development. Developmental Biology. 363: 438-50. PMID 22290329 DOI: 10.1016/J.Ydbio.2012.01.015  0.301
2012 Cheung ID, Bagnat M, Ma TP, Datta A, Evason K, Moore JC, Lawson ND, Mostov KE, Moens CB, Stainier DY. Regulation of intrahepatic biliary duct morphogenesis by Claudin 15-like b. Developmental Biology. 361: 68-78. PMID 22020048 DOI: 10.1016/J.Ydbio.2011.10.004  0.805
2011 Zhang SS, Kim KH, Rosen A, Smyth JW, Sakuma R, Delgado-Olguín P, Davis M, Chi NC, Puviindran V, Gaborit N, Sukonnik T, Wylie JN, Brand-Arzamendi K, Farman GP, Kim J, ... ... Stainier DY, et al. Iroquois homeobox gene 3 establishes fast conduction in the cardiac His-Purkinje network. Proceedings of the National Academy of Sciences of the United States of America. 108: 13576-81. PMID 21825130 DOI: 10.1073/Pnas.1106911108  0.321
2011 Fish JE, Wythe JD, Xiao T, Bruneau BG, Stainier DY, Srivastava D, Woo S. A Slit/miR-218/Robo regulatory loop is required during heart tube formation in zebrafish. Development (Cambridge, England). 138: 1409-19. PMID 21385766 DOI: 10.1242/Dev.060046  0.676
2011 Takeuchi JK, Lou X, Alexander JM, Sugizaki H, Delgado-Olguín P, Holloway AK, Mori AD, Wylie JN, Munson C, Zhu Y, Zhou YQ, Yeh RF, Henkelman RM, Harvey RP, Metzger D, ... ... Stainier DY, et al. Chromatin remodelling complex dosage modulates transcription factor function in heart development. Nature Communications. 2: 187. PMID 21304516 DOI: 10.1038/Ncomms1187  0.705
2010 Arrenberg AB, Stainier DY, Baier H, Huisken J. Optogenetic control of cardiac function. Science (New York, N.Y.). 330: 971-4. PMID 21071670 DOI: 10.1126/science.1195929  0.31
2010 Liu J, Bressan M, Hassel D, Huisken J, Staudt D, Kikuchi K, Poss KD, Mikawa T, Stainier DY. A dual role for ErbB2 signaling in cardiac trabeculation. Development (Cambridge, England). 137: 3867-75. PMID 20978078 DOI: 10.1242/Dev.053736  0.812
2010 Liu J, Stainier DY. Tbx5 and Bmp signaling are essential for proepicardium specification in zebrafish. Circulation Research. 106: 1818-28. PMID 20413782 DOI: 10.1161/CIRCRESAHA.110.217950  0.376
2010 Kikuchi K, Holdway JE, Werdich AA, Anderson RM, Fang Y, Egnaczyk GF, Evans T, Macrae CA, Stainier DY, Poss KD. Primary contribution to zebrafish heart regeneration by gata4(+) cardiomyocytes. Nature. 464: 601-5. PMID 20336144 DOI: 10.1038/Nature08804  0.517
2010 Chung WS, Andersson O, Row R, Kimelman D, Stainier DY. Suppression of Alk8-mediated Bmp signaling cell-autonomously induces pancreatic beta-cells in zebrafish. Proceedings of the National Academy of Sciences of the United States of America. 107: 1142-7. PMID 20080554 DOI: 10.1073/Pnas.0910205107  0.506
2010 Woo S, Stainier DY. Regulation of endodermal cell migration by Rac1 during zebrafish gastrulation Developmental Biology. 344: 472. DOI: 10.1016/J.Ydbio.2010.05.235  0.683
2010 Yin C, Kikuchi K, Hochgreb T, Poss K, Stainier D. O30. Hepatopancreatic development and function in zebrafish Differentiation. 80: S15. DOI: 10.1016/J.Diff.2010.09.173  0.392
2009 Anderson RM, Bosch JA, Goll MG, Hesselson D, Dong PD, Shin D, Chi NC, Shin CH, Schlegel A, Halpern M, Stainier DY. Loss of Dnmt1 catalytic activity reveals multiple roles for DNA methylation during pancreas development and regeneration. Developmental Biology. 334: 213-23. PMID 19631206 DOI: 10.1016/J.Ydbio.2009.07.017  0.301
2009 Aanstad P, Santos N, Corbit KC, Scherz PJ, Trinh le A, Salvenmoser W, Huisken J, Reiter JF, Stainier DY. The extracellular domain of Smoothened regulates ciliary localization and is required for high-level Hh signaling. Current Biology : Cb. 19: 1034-9. PMID 19464178 DOI: 10.1016/J.Cub.2009.04.053  0.789
2009 de Jong-Curtain TA, Parslow AC, Trotter AJ, Hall NE, Verkade H, Tabone T, Christie EL, Crowhurst MO, Layton JE, Shepherd IT, Nixon SJ, Parton RG, Zon LI, Stainier DY, Lieschke GJ, et al. Abnormal nuclear pore formation triggers apoptosis in the intestinal epithelium of elys-deficient zebrafish. Gastroenterology. 136: 902-11. PMID 19073184 DOI: 10.1053/J.Gastro.2008.11.012  0.35
2009 Cheung ID, Stainier D. Role of tight junction proteins in zebrafish liver morphogenesis Developmental Biology. 331: 492. DOI: 10.1016/J.Ydbio.2009.05.399  0.766
2009 Woo S, Stainier DY. Slit2 controls endocardial cell migration during zebrafish heart morphogenesis Developmental Biology. 331: 474. DOI: 10.1016/J.Ydbio.2009.05.329  0.68
2009 Christie E, Trotter A, Rifat Y, Badrock A, Parslow A, Verkade H, Ober E, Field H, Stainier D, Hannan R, Lieschke G, Heath J. 09-P010 A nonsense mutation in the TFIIH p52 gene causes abnormal rRNA processing in the zebrafish intestinal mutant, sycorax Mechanisms of Development. 126. DOI: 10.1016/J.Mod.2009.06.340  0.777
2008 Osborne N, Brand-Arzamendi K, Ober EA, Jin SW, Verkade H, Holtzman NG, Yelon D, Stainier DY. The spinster homolog, two of hearts, is required for sphingosine 1-phosphate signaling in zebrafish. Current Biology : Cb. 18: 1882-8. PMID 19062281 DOI: 10.1016/J.Cub.2008.10.061  0.652
2008 Chung WS, Shin CH, Stainier DY. Bmp2 signaling regulates the hepatic versus pancreatic fate decision. Developmental Cell. 15: 738-48. PMID 19000838 DOI: 10.1016/J.Devcel.2008.08.019  0.529
2008 Munson C, Huisken J, Bit-Avragim N, Kuo T, Dong PD, Ober EA, Verkade H, Abdelilah-Seyfried S, Stainier DY. Regulation of neurocoel morphogenesis by Pard6 gamma b. Developmental Biology. 324: 41-54. PMID 18817769 DOI: 10.1016/J.Ydbio.2008.08.033  0.731
2008 Bit-Avragim N, Hellwig N, Rudolph F, Munson C, Stainier DY, Abdelilah-Seyfried S. Divergent polarization mechanisms during vertebrate epithelial development mediated by the Crumbs complex protein Nagie oko. Journal of Cell Science. 121: 2503-10. PMID 18628301 DOI: 10.1242/Jcs.033167  0.709
2008 Chi NC, Shaw RM, Jungblut B, Huisken J, Ferrer T, Arnaout R, Scott I, Beis D, Xiao T, Baier H, Jan LY, Tristani-Firouzi M, Stainier DY. Genetic and physiologic dissection of the vertebrate cardiac conduction system. Plos Biology. 6: e109. PMID 18479184 DOI: 10.1371/journal.pbio.0060109  0.337
2008 Chung WS, Stainier DY. Intra-endodermal interactions are required for pancreatic beta cell induction. Developmental Cell. 14: 582-93. PMID 18410733 DOI: 10.1016/J.Devcel.2008.02.012  0.501
2008 Shin CH, Chung WS, Hong SK, Ober EA, Verkade H, Field HA, Huisken J, Stainier DY. Multiple roles for Med12 in vertebrate endoderm development. Developmental Biology. 317: 467-79. PMID 18394596 DOI: 10.1016/J.Ydbio.2008.02.031  0.824
2008 Chi NC, Shaw RM, De Val S, Kang G, Jan LY, Black BL, Stainier DY. Foxn4 directly regulates tbx2b expression and atrioventricular canal formation. Genes & Development. 22: 734-9. PMID 18347092 DOI: 10.1101/Gad.1629408  0.334
2008 Chung W, Stainier DY. Intra-endodermal interactions are required for pancreatic β-cell induction Developmental Biology. 319: 531. DOI: 10.1016/J.Ydbio.2008.05.235  0.432
2007 Bagnat M, Cheung ID, Mostov KE, Stainier DY. Genetic control of single lumen formation in the zebrafish gut. Nature Cell Biology. 9: 954-60. PMID 17632505 DOI: 10.1038/Ncb1621  0.788
2007 Arnaout R, Ferrer T, Huisken J, Spitzer K, Stainier DY, Tristani-Firouzi M, Chi NC. Zebrafish model for human long QT syndrome. Proceedings of the National Academy of Sciences of the United States of America. 104: 11316-21. PMID 17592134 DOI: 10.1073/pnas.0702724104  0.303
2007 Jin SW, Herzog W, Santoro MM, Mitchell TS, Frantsve J, Jungblut B, Beis D, Scott IC, D'Amico LA, Ober EA, Verkade H, Field HA, Chi NC, Wehman AM, Baier H, ... Stainier DY, et al. A transgene-assisted genetic screen identifies essential regulators of vascular development in vertebrate embryos. Developmental Biology. 307: 29-42. PMID 17531218 DOI: 10.1016/J.Ydbio.2007.03.526  0.791
2007 Scott IC, Masri B, D'Amico LA, Jin SW, Jungblut B, Wehman AM, Baier H, Audigier Y, Stainier DY. The g protein-coupled receptor agtrl1b regulates early development of myocardial progenitors. Developmental Cell. 12: 403-13. PMID 17336906 DOI: 10.1016/J.Devcel.2007.01.012  0.356
2007 D'Amico L, Scott IC, Jungblut B, Stainier DYR. A Mutation in Zebrafish hmgcr1b Reveals a Role for Isoprenoids in Vertebrate Heart-Tube Formation Current Biology. 17: 252-259. PMID 17276918 DOI: 10.1016/j.cub.2006.12.023  0.389
2007 Dong PD, Munson CA, Norton W, Crosnier C, Pan X, Gong Z, Neumann CJ, Stainier DY. Fgf10 regulates hepatopancreatic ductal system patterning and differentiation. Nature Genetics. 39: 397-402. PMID 17259985 DOI: 10.1038/ng1961  0.697
2007 Stainier D, Chi N, Shaw R, Huisken J, Jungblut B, Jan L. Cellular and genetic dissection of the cardiac electric system Developmental Biology. 306: 290. DOI: 10.1016/J.Ydbio.2007.03.055  0.332
2006 Sakaguchi T, Kikuchi Y, Kuroiwa A, Takeda H, Stainier DY. The yolk syncytial layer regulates myocardial migration by influencing extracellular matrix assembly in zebrafish. Development (Cambridge, England). 133: 4063-72. PMID 17008449 DOI: 10.1242/Dev.02581  0.573
2006 Ober EA, Verkade H, Field HA, Stainier DY. Mesodermal Wnt2b signalling positively regulates liver specification. Nature. 442: 688-91. PMID 16799568 DOI: 10.1038/Nature04888  0.798
2005 Jin SW, Beis D, Mitchell T, Chen JN, Stainier DY. Cellular and molecular analyses of vascular tube and lumen formation in zebrafish. Development (Cambridge, England). 132: 5199-209. PMID 16251212 DOI: 10.1242/Dev.02087  0.519
2005 Corbit KC, Aanstad P, Singla V, Norman AR, Stainier DY, Reiter JF. Vertebrate Smoothened functions at the primary cilium. Nature. 437: 1018-21. PMID 16136078 DOI: 10.1038/Nature04117  0.799
2005 Beis D, Bartman T, Jin SW, Scott IC, D'Amico LA, Ober EA, Verkade H, Frantsve J, Field HA, Wehman A, Baier H, Tallafuss A, Bally-Cuif L, Chen JN, Stainier DY, et al. Genetic and cellular analyses of zebrafish atrioventricular cushion and valve development. Development (Cambridge, England). 132: 4193-204. PMID 16107477 DOI: 10.1242/Dev.01970  0.822
2005 Trinh LA, Yelon D, Stainier DY. Hand2 regulates epithelial formation during myocardial diferentiation. Current Biology : Cb. 15: 441-6. PMID 15786591 DOI: 10.1016/J.Cub.2004.12.083  0.802
2004 Trinh LA, Stainier DY. Cardiac development. Methods in Cell Biology. 76: 455-73. PMID 15602887  0.719
2004 Bartman T, Walsh EC, Wen KK, McKane M, Ren J, Alexander J, Rubenstein PA, Stainier DY. Early myocardial function affects endocardial cushion development in zebrafish. Plos Biology. 2: E129. PMID 15138499 DOI: 10.1371/Journal.Pbio.0020129  0.694
2004 Kikuchi Y, Verkade H, Reiter JF, Kim CH, Chitnis AB, Kuroiwa A, Stainier DY. Notch signaling can regulate endoderm formation in zebrafish. Developmental Dynamics : An Official Publication of the American Association of Anatomists. 229: 756-62. PMID 15042699 DOI: 10.1002/Dvdy.10483  0.721
2004 Trinh LA, Stainier DY. Fibronectin regulates epithelial organization during myocardial migration in zebrafish. Developmental Cell. 6: 371-82. PMID 15030760 DOI: 10.1016/S1534-5807(04)00063-2  0.74
2004 Reim G, Mizoguchi T, Stainier DY, Kikuchi Y, Brand M. The POU domain protein spg (pou2/Oct4) is essential for endoderm formation in cooperation with the HMG domain protein casanova. Developmental Cell. 6: 91-101. PMID 14723850 DOI: 10.1016/S1534-5807(03)00396-4  0.507
2004 Ober EA, Olofsson B, Mäkinen T, Jin SW, Shoji W, Koh GY, Alitalo K, Stainier DYR. Vegfc is required for vascular development and endoderm morphogenesis in zebrafish Embo Reports. 5: 78-84. PMID 14710191 DOI: 10.1038/Sj.Embor.7400047  0.331
2003 Horne-Badovinac S, Rebagliati M, Stainier DY. A cellular framework for gut-looping morphogenesis in zebrafish. Science (New York, N.Y.). 302: 662-5. PMID 14576439 DOI: 10.1126/Science.1085397  0.71
2003 Berdougo E, Coleman H, Lee DH, Stainier DY, Yelon D. Mutation of weak atrium/atrial myosin heavy chain disrupts atrial function and influences ventricular morphogenesis in zebrafish. Development (Cambridge, England). 130: 6121-9. PMID 14573521 DOI: 10.1242/Dev.00838  0.68
2003 Field HA, Dong PD, Beis D, Stainier DY. Formation of the digestive system in zebrafish. II. Pancreas morphogenesis. Developmental Biology. 261: 197-208. PMID 12941629 DOI: 10.1016/S0012-1606(03)00308-7  0.8
2003 Trinh LA, Meyer D, Stainier DY. The Mix family homeodomain gene bonnie and clyde functions with other components of the Nodal signaling pathway to regulate neural patterning in zebrafish. Development (Cambridge, England). 130: 4989-98. PMID 12930774 DOI: 10.1242/Dev.00614  0.757
2003 Tidyman WE, Sehnert AJ, Huq A, Agard J, Deegan F, Stainier DYR, Ordahl CP. In vivo regulation of the chicken cardiac troponin T gene promoter in zebrafish embryos Developmental Dynamics. 227: 484-496. PMID 12889057 DOI: 10.1002/Dvdy.10328  0.31
2003 Field HA, Ober EA, Roeser T, Stainier DY. Formation of the digestive system in zebrafish. I. Liver morphogenesis. Developmental Biology. 253: 279-90. PMID 12645931 DOI: 10.1016/S0012-1606(02)00017-9  0.797
2003 Miller CT, Yelon D, Stainier DY, Kimmel CB. Two endothelin 1 effectors, hand2 and bapx1, pattern ventral pharyngeal cartilage and the jaw joint. Development (Cambridge, England). 130: 1353-65. PMID 12588851 DOI: 10.1242/Dev.00339  0.626
2003 Ober EA, Field HA, Stainier DY. From endoderm formation to liver and pancreas development in zebrafish. Mechanisms of Development. 120: 5-18. PMID 12490292 DOI: 10.1016/S0925-4773(02)00327-1  0.805
2002 Dehal P, Satou Y, Campbell RK, Chapman J, Degnan B, De Tomaso A, Davidson B, Di Gregorio A, Gelpke M, Goodstein DM, Harafuji N, Hastings KE, Ho I, Hotta K, Huang W, ... ... Stainier D, et al. The draft genome of Ciona intestinalis: insights into chordate and vertebrate origins. Science (New York, N.Y.). 298: 2157-67. PMID 12481130 DOI: 10.1126/Science.1080049  0.302
2002 Yelon D, Stainier DYR. Pattern formation: Swimming in retinoic acid Current Biology. 12: R707-R709. PMID 12401191 DOI: 10.1016/S0960-9822(02)01213-7  0.569
2002 Sehnert AJ, Huq A, Weinstein BM, Walker C, Fishman M, Stainier DY. Cardiac troponin T is essential in sarcomere assembly and cardiac contractility. Nature Genetics. 31: 106-10. PMID 11967535 DOI: 10.1038/Ng875  0.54
2002 Keegan BR, Feldman JL, Lee DH, Koos DS, Ho RK, Stainier DY, Yelon D. The elongation factors Pandora/Spt6 and Foggy/Spt5 promote transcription in the zebrafish embryo. Development (Cambridge, England). 129: 1623-32. PMID 11923199  0.642
2001 Horne-Badovinac S, Lin D, Waldron S, Schwarz M, Mbamalu G, Pawson T, Jan YN, Stainier DYR, Abdelilah-Seyfried S. Positional cloning of heart and soul reveals multiple roles for PKCλ in zebrafish organogenesis Current Biology. 11: 1492-1502. PMID 11591316 DOI: 10.1016/S0960-9822(01)00458-4  0.739
2001 Walsh EC, Stainier DY. UDP-glucose dehydrogenase required for cardiac valve formation in zebrafish. Science (New York, N.Y.). 293: 1670-3. PMID 11533493 DOI: 10.1126/Science.293.5535.1670  0.683
2001 Kikuchi Y, Agathon A, Alexander J, Thisse C, Waldron S, Yelon D, Thisse B, Stainier DYR. casanova encodes a novel Sox-related protein necessary and sufficient for early endoderm formation in zebrafish Genes and Development. 15: 1493-1505. PMID 11410530 DOI: 10.1101/Gad.892301  0.692
2001 Reiter JF, Verkade H, Stainier DYR. Bmp2b and Oep promote early myocardial differentiation through their regulation of gata5 Developmental Biology. 234: 330-338. PMID 11397003 DOI: 10.1006/Dbio.2001.0259  0.658
2001 Reiter JF, Kikuchi Y, Stainier DYR. Multiple roles for Gata5 in zebrafish endoderm formation Development. 128: 125-135. PMID 11092818  0.748
2000 Kupperman E, An S, Osborne N, Waldron S, Stainier DYR. A sphingosine-1-phosphate receptor regulates cell migration during vertebrate heart development Nature. 406: 192-195. PMID 10910360 DOI: 10.1038/35018092  0.376
2000 Yelon D, Ticho B, Halpern ME, Ruvinsky I, Ho RK, Silver LM, Stainier DY. The bHLH transcription factor hand2 plays parallel roles in zebrafish heart and pectoral fin development. Development (Cambridge, England). 127: 2573-82. PMID 10821756  0.371
2000 Kikuchi Y, Trinh LA, Reiter JF, Alexander J, Yelon D, Stainier DY. The zebrafish bonnie and clyde gene encodes a Mix family homeodomain protein that regulates the generation of endodermal precursors. Genes & Development. 14: 1279-89. PMID 10817762 DOI: 10.1101/Gad.14.10.1279  0.818
2000 Griffin KJP, Stoller J, Gibson M, Chen S, Yelon D, Stainier DYR, Kimelman D. A conserved role for H15-related T-box transcription factors in zebrafish and Drosophila heart formation Developmental Biology. 218: 235-247. PMID 10656766 DOI: 10.1006/Dbio.1999.9571  0.686
2000 Reifers F, Walsh EC, Léger S, Stainier DY, Brand M. Induction and differentiation of the zebrafish heart requires fibroblast growth factor 8 (fgf8/acerebellar). Development (Cambridge, England). 127: 225-35. PMID 10603341  0.706
1999 Reiter JF, Alexander J, Rodaway A, Yelon D, Patient R, Holder N, Stainier DY. Gata5 is required for the development of the heart and endoderm in zebrafish. Genes & Development. 13: 2983-95. PMID 10580005 DOI: 10.1101/Gad.13.22.2983  0.784
1999 Alexander J, Rothenberg M, Henry GL, Stainier DY. casanova plays an early and essential role in endoderm formation in zebrafish. Developmental Biology. 215: 343-57. PMID 10545242 DOI: 10.1006/Dbio.1999.9441  0.413
1999 Alexander J, Stainier DYR. A molecular pathway leading to endoderm formation in zebrafish Current Biology. 9: 1147-1157. PMID 10531029 DOI: 10.1016/S0960-9822(00)80016-0  0.33
1999 Ho CY, Houart C, Wilson SW, Stainier DY. A role for the extraembryonic yolk syncytial layer in patterning the zebrafish embryo suggested by properties of the hex gene. Current Biology : Cb. 9: 1131-4. PMID 10531010 DOI: 10.1016/S0960-9822(99)80485-0  0.341
1999 Yelon D, Horne SA, Stainier DY. Restricted expression of cardiac myosin genes reveals regulated aspects of heart tube assembly in zebrafish. Developmental Biology. 214: 23-37. PMID 10491254 DOI: 10.1006/Dbio.1999.9406  0.769
1999 Yelon D, Stainier DYR. Patterning during organogenesis: Genetic analysis of cardiac chamber formation Seminars in Cell and Developmental Biology. 10: 93-98. PMID 10355033 DOI: 10.1006/Scdb.1998.0278  0.678
1999 Sehnert AJ, Fishman MC, Stainier DYR. Molecular-Genetic Analysis of the silent heart Mutation in Zebrafish Pediatric Research. 45: 62A-62A. DOI: 10.1203/00006450-199904020-00373  0.466
1998 Alexander J, Stainier DYR, Yelon D. Screening mosaic F1 females for mutations affecting zebrafish heart induction and patterning Developmental Genetics. 22: 288-299. PMID 9621435 DOI: 10.1002/(Sici)1520-6408(1998)22:3<288::Aid-Dvg10>3.0.Co;2-2  0.651
1998 Reifers F, Böhli H, Walsh EC, Crossley PH, Stainier DY, Brand M. Fgf8 is mutated in zebrafish acerebellar (ace) mutants and is required for maintenance of midbrain-hindbrain boundary development and somitogenesis. Development (Cambridge, England). 125: 2381-95. PMID 9609821  0.676
1998 Lyons MS, Bell B, Stainier D, Peters KG. Isolation of the zebrafish homologues for the tie-1 and tie-2 endothelium-specific receptor tyrosine kinases Developmental Dynamics. 212: 133-140. PMID 9603430 DOI: 10.1002/(Sici)1097-0177(199805)212:1<133::Aid-Aja12>3.0.Co;2-8  0.372
1997 Fishman MC, Stainier DY, Breitbart RE, Westerfield M. Zebrafish: genetic and embryological methods in a transparent vertebrate embryo. Methods in Cell Biology. 52: 67-82. PMID 9379966 DOI: 10.1016/S0091-679X(08)60374-X  0.492
1997 Liao W, Bisgrove BW, Sawyer H, Hug B, Bell B, Peters K, Grunwald DJ, Stainier DY. The zebrafish gene cloche acts upstream of a flk-1 homologue to regulate endothelial cell differentiation. Development (Cambridge, England). 124: 381-9. PMID 9053314  0.349
1996 Weinstein BM, Schier AF, Abdelilah S, Malicki J, Solnica-Krezel L, Stemple DL, Stainier DY, Zwartkruis F, Driever W, Fishman MC. Hematopoietic mutations in the zebrafish. Development (Cambridge, England). 123: 303-9. PMID 9007250  0.497
1996 Stainier DY, Fouquet B, Chen JN, Warren KS, Weinstein BM, Meiler SE, Mohideen MA, Neuhauss SC, Solnica-Krezel L, Schier AF, Zwartkruis F, Stemple DL, Malicki J, Driever W, Fishman MC. Mutations affecting the formation and function of the cardiovascular system in the zebrafish embryo. Development (Cambridge, England). 123: 285-92. PMID 9007248 DOI: 10.5167/Uzh-237  0.639
1996 Stemple DL, Solnica-Krezel L, Zwartkruis F, Neuhauss SC, Schier AF, Malicki J, Stainier DY, Abdelilah S, Rangini Z, Mountcastle-Shah E, Driever W. Mutations affecting development of the notochord in zebrafish. Development (Cambridge, England). 123: 117-28. PMID 9007234 DOI: 10.5167/Uzh-238  0.309
1996 Ticho BS, Stainier DY, Fishman MC, Breitbart RE. Three zebrafish MEF2 genes delineate somitic and cardiac muscle development in wild-type and mutant embryos. Mechanisms of Development. 59: 205-18. PMID 8951797 DOI: 10.1016/0925-4773(96)00601-6  0.535
1995 Stainier DY, Weinstein BM, Detrich HW, Zon LI, Fishman MC. Cloche, an early acting zebrafish gene, is required by both the endothelial and hematopoietic lineages. Development (Cambridge, England). 121: 3141-50. PMID 7588049  0.524
1994 Stainier DY, Fishman MC. The zebrafish as a model system to study cardiovascular development. Trends in Cardiovascular Medicine. 4: 207-12. PMID 21244869 DOI: 10.1016/1050-1738(94)90036-1  0.526
1994 Fishman MC, Stainier DY. Cardiovascular development. Prospects for a genetic approach. Circulation Research. 74: 757-63. PMID 8156624  0.449
1994 Abdelilah S, Solnica-Krezel L, Stainier DY, Driever W. Implications for dorsoventral axis determination from the zebrafish mutation janus. Nature. 370: 468-71. PMID 8047167 DOI: 10.1038/370468A0  0.321
1994 Lee RK, Stainier DY, Weinstein BM, Fishman MC. Cardiovascular development in the zebrafish. II. Endocardial progenitors are sequestered within the heart field. Development (Cambridge, England). 120: 3361-6. PMID 7821208  0.535
1993 Stainier DY, Lee RK, Fishman MC. Cardiovascular development in the zebrafish. I. Myocardial fate map and heart tube formation. Development (Cambridge, England). 119: 31-40. PMID 8275863  0.55
1992 Stainier DY, Fishman MC. Patterning the zebrafish heart tube: acquisition of anteroposterior polarity. Developmental Biology. 153: 91-101. PMID 1516755  0.492
1991 Stainier DY, Bilder DH, Gilbert W. The B30 ganglioside is a cell surface marker for neural crest-derived neurons in the developing mouse. Developmental Biology. 144: 177-88. PMID 1995396 DOI: 10.1016/0012-1606(91)90489-P  0.644
1991 Stainier DY, Bilder DH, Gilbert W. Spatial domains in the developing forebrain: developmental regulation of a restricted cell surface protein. Developmental Biology. 147: 22-31. PMID 1879609 DOI: 10.1016/S0012-1606(05)80004-1  0.653
1991 Stainier DY, Gilbert W. Neuronal differentiation and maturation in the mouse trigeminal sensory system, in vivo and in vitro. The Journal of Comparative Neurology. 311: 300-12. PMID 1753021 DOI: 10.1002/Cne.903110210  0.403
1990 Stainier DY, Gilbert W. Pioneer neurons in the mouse trigeminal sensory system. Proceedings of the National Academy of Sciences of the United States of America. 87: 923-7. PMID 2300585 DOI: 10.1073/Pnas.87.3.923  0.415
1989 Stainier DY, Gilbert W. The monoclonal antibody B30 recognizes a specific neuronal cell surface antigen in the developing mesencephalic trigeminal nucleus of the mouse. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 9: 2468-85. PMID 2473175 DOI: 10.1523/Jneurosci.09-07-02468.1989  0.493
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