| Year |
Citation |
Score |
| 2024 |
Benvenuto G, Leone S, Astoricchio E, Bormke S, Jasek S, D'Aniello E, Kittelmann M, McDonald K, Hartenstein V, Baena V, Escrivà H, Bertrand S, Schierwater B, Burkhardt P, Ruiz-Trillo I, et al. Evolution of the ribbon-like organization of the Golgi apparatus in animal cells. Cell Reports. 113791. PMID 38428420 DOI: 10.1016/j.celrep.2024.113791 |
0.346 |
|
| 2023 |
Danko C, Chivu A, Abuhashem A, Barshad G, Rice E, Leger M, Vill A, Wong W, Brady R, Smith J, Wikramanayake A, Arenas-Mena C, Brito I, Ruiz-Trillo I, Hadjantonakis AK, et al. Evolution of promoter-proximal pausing enabled a new layer of transcription control. Research Square. PMID 36993251 DOI: 10.21203/rs.3.rs-2679520/v1 |
0.799 |
|
| 2023 |
Mitsi K, Richter DJ, Arroyo AS, López-Escardó D, Antó M, Oterino AG, Ruiz-Trillo I. Taxonomic composition, community structure and molecular novelty of microeukaryotes in a temperate oligomesotrophic lake as revealed by metabarcoding. Scientific Reports. 13: 3119. PMID 36813945 DOI: 10.1038/s41598-023-30228-4 |
0.785 |
|
| 2022 |
Ocaña-Pallarès E, Williams TA, López-Escardó D, Arroyo AS, Pathmanathan JS, Bapteste E, Tikhonenkov DV, Keeling PJ, Szöllősi GJ, Ruiz-Trillo I. Divergent genomic trajectories predate the origin of animals and fungi. Nature. PMID 36002568 DOI: 10.1038/s41586-022-05110-4 |
0.832 |
|
| 2022 |
Grau-Bové X, Navarrete C, Chiva C, Pribasnig T, Antó M, Torruella G, Galindo LJ, Lang BF, Moreira D, López-Garcia P, Ruiz-Trillo I, Schleper C, Sabidó E, Sebé-Pedrós A. A phylogenetic and proteomic reconstruction of eukaryotic chromatin evolution. Nature Ecology & Evolution. PMID 35680998 DOI: 10.1038/s41559-022-01771-6 |
0.798 |
|
| 2022 |
Dudin O, Wielgoss S, New AM, Ruiz-Trillo I. Regulation of sedimentation rate shapes the evolution of multicellularity in a close unicellular relative of animals. Plos Biology. 20: e3001551. PMID 35349578 DOI: 10.1371/journal.pbio.3001551 |
0.759 |
|
| 2022 |
Leger MM, Ros-Rocher N, Najle SR, Ruiz-Trillo I. Rel/NF-κB Transcription Factors Emerged at the Onset of Opisthokonts. Genome Biology and Evolution. 14. PMID 34999783 DOI: 10.1093/gbe/evab289 |
0.804 |
|
| 2021 |
Guberovic I, Hurtado-Bagès S, Rivera-Casas C, Knobloch G, Malinverni R, Valero V, Leger MM, García J, Basquin J, Gómez de Cedrón M, Frigolé-Vivas M, Cheema MS, Pérez A, Ausió J, Ramírez de Molina A, ... ... Ruiz-Trillo I, et al. Evolution of a histone variant involved in compartmental regulation of NAD metabolism. Nature Structural & Molecular Biology. 28: 1009-1019. PMID 34887560 DOI: 10.1038/s41594-021-00692-5 |
0.792 |
|
| 2021 |
Urrutia A, Mitsi K, Foster R, Ross S, Carr M, Ward GM, van Aerle R, Marigomez I, Leger MM, Ruiz-Trillo I, Feist SW, Bass D. Txikispora philomaios n. sp., n. g., a Micro-Eukaryotic Pathogen of Amphipods, Reveals Parasitism and Hidden Diversity in Class Filasterea. The Journal of Eukaryotic Microbiology. e12875. PMID 34726818 DOI: 10.1111/jeu.12875 |
0.775 |
|
| 2021 |
Arroyo AS, Iannes R, Bapteste E, Ruiz-Trillo I. Corrigendum to: Gene Similarity Networks Unveil a Potential Novel Unicellular Group Closely Related to Animals from the Tara Oceans Expedition. Genome Biology and Evolution. 13. PMID 34418058 DOI: 10.1093/gbe/evab140 |
0.799 |
|
| 2021 |
Kożyczkowska A, Najle SR, Ocaña-Pallarès E, Aresté C, Shabardina V, Ara PS, Ruiz-Trillo I, Casacuberta E. Stable transfection in protist Corallochytriumlimacisporum identifies novel cellular features among unicellular animals relatives. Current Biology : Cb. PMID 34293333 DOI: 10.1016/j.cub.2021.06.061 |
0.81 |
|
| 2021 |
Ros-Rocher N, Pérez-Posada A, Leger MM, Ruiz-Trillo I. The origin of animals: an ancestral reconstruction of the unicellular-to-multicellular transition. Open Biology. 11: 200359. PMID 33622103 DOI: 10.1098/rsob.200359 |
0.824 |
|
| 2020 |
Parra-Acero H, Harcet M, Sánchez-Pons N, Casacuberta E, Brown NH, Dudin O, Ruiz-Trillo I. Integrin-Mediated Adhesion in the Unicellular Holozoan Capsaspora owczarzaki. Current Biology : Cb. PMID 32857975 DOI: 10.1016/J.Cub.2020.08.015 |
0.777 |
|
| 2020 |
Lu Y, Ocaña-Pallarès E, López-Escardó D, Dennis SR, Monaghan MT, Ruiz-Trillo I, Spaak P, Wolinska J. Revisiting the phylogenetic position of Caullerya mesnili (Ichthyosporea), a common Daphnia parasite, based on 22 protein-coding genes. Molecular Phylogenetics and Evolution. 106891. PMID 32562822 DOI: 10.1016/J.Ympev.2020.106891 |
0.823 |
|
| 2020 |
Dudin O, Ondracka A, Grau-Bové X, Haraldsen AA, Toyoda A, Suga H, Bråte J, Ruiz-Trillo I. Correction: A unicellular relative of animals generates a layer of polarized cells by actomyosin-dependent cellularization. Elife. 9. PMID 32553113 DOI: 10.7554/eLife.60055 |
0.774 |
|
| 2020 |
Arroyo AS, Iannes R, Bapteste E, Ruiz-Trillo I. Gene similarity networks unveil a potential novel unicellular group closely related to animals from the Tara Oceans expedition. Genome Biology and Evolution. PMID 32533833 DOI: 10.1093/Gbe/Evaa117 |
0.833 |
|
| 2020 |
Faktorová D, Nisbet RER, Fernández Robledo JA, Casacuberta E, Sudek L, Allen AE, Ares M, Aresté C, Balestreri C, Barbrook AC, Beardslee P, Bender S, Booth DS, Bouget FY, Bowler C, ... ... Ruiz-Trillo I, et al. Publisher Correction: Genetic tool development in marine protists: emerging model organisms for experimental cell biology. Nature Methods. PMID 32296171 DOI: 10.1038/S41592-020-0828-6 |
0.787 |
|
| 2020 |
Faktorová D, Nisbet RER, Fernández Robledo JA, Casacuberta E, Sudek L, Allen AE, Ares M, Aresté C, Balestreri C, Barbrook AC, Beardslee P, Bender S, Booth DS, Bouget FY, Bowler C, ... ... Ruiz-Trillo I, et al. Genetic tool development in marine protists: emerging model organisms for experimental cell biology. Nature Methods. PMID 32251396 DOI: 10.1038/S41592-020-0796-X |
0.806 |
|
| 2020 |
Pérez-Posada A, Dudin O, Ocaña-Pallarès E, Ruiz-Trillo I, Ondracka A. Cell cycle transcriptomics of Capsaspora provides insights into the evolution of cyclin-CDK machinery. Plos Genetics. 16: e1008584. PMID 32176685 DOI: 10.1371/Journal.Pgen.1008584 |
0.797 |
|
| 2020 |
Ocaña-Pallarès E, Vergara Z, Desvoyes B, Tejada-Jimenez M, Romero-Jurado A, Galvan A, Fernandez E, Ruiz-Trillo I, Gutierrez C. Origin recognition complex (ORC) evolution is influenced by global gene duplication/loss patterns in eukaryotic genomes. Genome Biology and Evolution. PMID 31990293 DOI: 10.1093/Gbe/Evaa011 |
0.46 |
|
| 2020 |
Titus MA, Ruiz-Trillo I, Gibson MC. Decision letter: Genome editing enables reverse genetics of multicellular development in the choanoflagellate Salpingoeca rosetta Elife. DOI: 10.7554/Elife.56193.Sa1 |
0.318 |
|
| 2019 |
Dudin O, Ondracka A, Grau-Bové X, Haraldsen AA, Toyoda A, Suga H, Bråte J, Ruiz-Trillo I. A unicellular relative of animals generates a layer of polarized cells by actomyosin-dependent cellularization. Elife. 8. PMID 31647412 DOI: 10.7554/Elife.49801 |
0.793 |
|
| 2019 |
López-Escardó D, Grau-Bové X, Guillaumet-Adkins A, Gut M, Sieracki ME, Ruiz-Trillo I. Reconstruction of protein domain evolution using single-cell amplified genomes of uncultured choanoflagellates sheds light on the origin of animals. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 374: 20190088. PMID 31587642 DOI: 10.1098/Rstb.2019.0088 |
0.846 |
|
| 2019 |
Mitsi K, Arroyo AS, Ruiz-Trillo I. A global metabarcoding analysis expands molecular diversity of Platyhelminthes and reveals novel early-branching clades. Biology Letters. 15: 20190182. PMID 31506037 DOI: 10.1098/Rsbl.2019.0182 |
0.817 |
|
| 2019 |
Ocaña-Pallarès E, Najle SR, Scazzocchio C, Ruiz-Trillo I. Reticulate evolution in eukaryotes: Origin and evolution of the nitrate assimilation pathway. Plos Genetics. 15: e1007986. PMID 30789903 DOI: 10.1371/Journal.Pgen.1007986 |
0.81 |
|
| 2019 |
O'Malley MA, Leger MM, Wideman JG, Ruiz-Trillo I. Concepts of the last eukaryotic common ancestor. Nature Ecology & Evolution. 3: 338-344. PMID 30778187 DOI: 10.1038/S41559-019-0796-3 |
0.814 |
|
| 2019 |
Denbo S, Aono K, Kai T, Yagasaki R, Ruiz-Trillo I, Suga H. Revision of the Capsaspora genome using read mating information adjusts the view on premetazoan genome. Development, Growth & Differentiation. 61: 34-42. PMID 30585312 DOI: 10.1111/Dgd.12587 |
0.713 |
|
| 2019 |
Kozyczkowska A, Najle S, Ruiz-Trillo I, Casacuberta E. Discovering the biology behind the organism while developing genetic tools for Corallochytrium limacisporum Access Microbiology. 1. DOI: 10.1099/acmi.ac2019.po0377 |
0.755 |
|
| 2018 |
Rafels-Ybern À, Torres AG, Camacho N, Herencia-Ropero A, Roura Frigolé H, Wulff TF, Raboteg M, Bordons A, Grau-Bove X, Ruiz-Trillo I, Ribas de Pouplana L. The expansion of Inosine at the wobble position of tRNAs, and its role in the evolution of proteomes. Molecular Biology and Evolution. PMID 30590541 DOI: 10.1093/Molbev/Msy245 |
0.757 |
|
| 2018 |
Bråte J, Neumann RS, Fromm B, Haraldsen AAB, Tarver JE, Suga H, Donoghue PCJ, Peterson KJ, Ruiz-Trillo I, Grini PE, Shalchian-Tabrizi K. Unicellular Origin of the Animal MicroRNA Machinery. Current Biology : Cb. PMID 30318349 DOI: 10.1016/J.Cub.2018.08.018 |
0.712 |
|
| 2018 |
Grau-Bové X, Ruiz-Trillo I, Irimia M. Origin of exon skipping-rich transcriptomes in animals driven by evolution of gene architecture. Genome Biology. 19: 135. PMID 30223879 DOI: 10.1186/S13059-018-1499-9 |
0.766 |
|
| 2018 |
López-Escardó D, Paps J, de Vargas C, Massana R, Ruiz-Trillo I, Del Campo J. Metabarcoding analysis on European coastal samples reveals new molecular metazoan diversity. Scientific Reports. 8: 9106. PMID 29904074 DOI: 10.1038/S41598-018-27509-8 |
0.814 |
|
| 2018 |
Ondracka A, Dudin O, Ruiz-Trillo I. Decoupling of Nuclear Division Cycles and Cell Size during the Coenocytic Growth of the Ichthyosporean Sphaeroforma arctica. Current Biology : Cb. PMID 29887314 DOI: 10.1016/J.Cub.2018.04.074 |
0.791 |
|
| 2018 |
Parra-Acero H, Ros-Rocher N, Perez-Posada A, Kożyczkowska A, Sánchez-Pons N, Nakata A, Suga H, Najle SR, Ruiz-Trillo I. Transfection of , a close unicellular relative of animals. Development (Cambridge, England). PMID 29752387 DOI: 10.1242/Dev.162107 |
0.81 |
|
| 2018 |
Ćetković H, Bosnar MH, Perina D, Mikoč A, Deželjin M, Belužić R, Bilandžija H, Ruiz-Trillo I, Harcet M. Characterization of a group I Nme protein of Capsaspora owczarzaki-a close unicellular relative of animals. Laboratory Investigation; a Journal of Technical Methods and Pathology. PMID 29400699 DOI: 10.1038/Labinvest.2017.134 |
0.798 |
|
| 2018 |
Arroyo AS, López-Escardó D, Kim E, Ruiz-Trillo I, Najle SR. Novel Diversity of Deeply Branching Holomycota and Unicellular Holozoans Revealed by Metabarcoding in Middle Paraná River, Argentina Frontiers in Ecology and Evolution. 6. DOI: 10.3389/Fevo.2018.00099 |
0.815 |
|
| 2017 |
Ferrer-Bonet M, Ruiz-Trillo I. Capsaspora owczarzaki. Current Biology : Cb. 27: R829-R830. PMID 28898640 DOI: 10.1016/j.cub.2017.05.074 |
0.303 |
|
| 2017 |
López-Escardó D, Grau-Bové X, Guillaumet-Adkins A, Gut M, Sieracki ME, Ruiz-Trillo I. Evaluation of single-cell genomics to address evolutionary questions using three SAGs of the choanoflagellate Monosiga brevicollis. Scientific Reports. 7: 11025. PMID 28887541 DOI: 10.1038/S41598-017-11466-9 |
0.82 |
|
| 2017 |
Rafels-Ybern À, Torres AG, Grau-Bove X, Ruiz-Trillo I, de Pouplana LR. Codon adaptation to tRNAs with Inosine modification at position 34 is widespread among Eukaryotes and present in two Bacterial phyla. Rna Biology. 0. PMID 28880718 DOI: 10.1080/15476286.2017.1358348 |
0.765 |
|
| 2017 |
López-Escardó D, López-García P, Moreira D, Ruiz-Trillo I, Torruella G. Parvularia atlantis Gen. et Sp. Nov., a Nucleariid Filose Amoeba (Holomycota, Opisthokonta). The Journal of Eukaryotic Microbiology. PMID 28741861 DOI: 10.1111/Jeu.12450 |
0.801 |
|
| 2017 |
Grau-Bové X, Torruella G, Donachie S, Suga H, Leonard G, Richards TA, Ruiz-Trillo I. Dynamics of genomic innovation in the unicellular ancestry of animals. Elife. 6. PMID 28726632 DOI: 10.7554/Elife.26036 |
0.829 |
|
| 2017 |
Sebé-Pedrós A, Degnan BM, Ruiz-Trillo I. The origin of Metazoa: a unicellular perspective. Nature Reviews. Genetics. PMID 28479598 DOI: 10.1038/Nrg.2017.21 |
0.837 |
|
| 2017 |
Sebé-Pedrós A, Ruiz-Trillo I. Evolution and Classification of the T-Box Transcription Factor Family. Current Topics in Developmental Biology. 122: 1-26. PMID 28057261 DOI: 10.1016/Bs.Ctdb.2016.06.004 |
0.806 |
|
| 2017 |
Grau-Bové X, Torruella G, Donachie S, Suga H, Leonard G, Richards TA, Ruiz-Trillo I. Author response: Dynamics of genomic innovation in the unicellular ancestry of animals Elife. DOI: 10.7554/Elife.26036.043 |
0.683 |
|
| 2016 |
Sebé-Pedrós A, Peña MI, Capella-Gutiérrez S, Antó M, Gabaldón T, Ruiz-Trillo I, Sabidó E. High-Throughput Proteomics Reveals the Unicellular Roots of Animal Phosphosignaling and Cell Differentiation. Developmental Cell. PMID 27746046 DOI: 10.1016/J.Devcel.2016.09.019 |
0.834 |
|
| 2016 |
Arroyo AS, López-Escardó D, de Vargas C, Ruiz-Trillo I. Hidden diversity of Acoelomorpha revealed through metabarcoding. Biology Letters. 12. PMID 27677819 DOI: 10.1098/Rsbl.2016.0674 |
0.818 |
|
| 2016 |
Najle SR, Molina MC, Ruiz-Trillo I, Uttaro AD. Sterol metabolism in the filasterean Capsaspora owczarzaki has features that resemble both fungi and animals. Open Biology. 6. PMID 27383626 DOI: 10.1098/Rsob.160029 |
0.776 |
|
| 2016 |
O'Malley MA, Wideman JG, Ruiz-Trillo I. Losing Complexity: The Role of Simplification in Macroevolution. Trends in Ecology & Evolution. PMID 27212432 DOI: 10.1016/J.Tree.2016.04.004 |
0.342 |
|
| 2016 |
Sebé-Pedrós A, Ballaré C, Parra-Acero H, Chiva C, Tena JJ, Sabidó E, Gómez-Skarmeta JL, Di Croce L, Ruiz-Trillo I. The Dynamic Regulatory Genome of Capsaspora and the Origin of Animal Multicellularity. Cell. 165: 1224-37. PMID 27114036 DOI: 10.1016/J.Cell.2016.03.034 |
0.823 |
|
| 2016 |
Esquerdo M, Grau-Bové X, Garanto A, Toulis V, Garcia-Monclús S, Millo E, López-Iniesta MJ, Abad-Morales V, Ruiz-Trillo I, Marfany G. Expression Atlas of the Deubiquitinating Enzymes in the Adult Mouse Retina, Their Evolutionary Diversification and Phenotypic Roles. Plos One. 11: e0150364. PMID 26934049 DOI: 10.1371/Journal.Pone.0150364 |
0.775 |
|
| 2016 |
Gold DA, Grabenstatter J, de Mendoza A, Riesgo A, Ruiz-Trillo I, Summons RE. Sterol and genomic analyses validate the sponge biomarker hypothesis. Proceedings of the National Academy of Sciences of the United States of America. PMID 26903629 DOI: 10.1073/Pnas.1512614113 |
0.461 |
|
| 2015 |
de Mendoza A, Suga H, Permanyer J, Irimia M, Ruiz-Trillo I. Complex transcriptional regulation and independent evolution of fungal-like traits in a relative of animals. Elife. 4. PMID 26465111 DOI: 10.7554/Elife.08904 |
0.747 |
|
| 2015 |
Torruella G, de Mendoza A, Grau-Bové X, Antó M, Chaplin MA, Del Campo J, Eme L, Pérez-Cordón G, Whipps CM, Nichols KM, Paley R, Roger AJ, Sitjà-Bobadilla A, Donachie S, Ruiz-Trillo I. Phylogenomics Reveals Convergent Evolution of Lifestyles in Close Relatives of Animals and Fungi. Current Biology : Cb. 25: 2404-10. PMID 26365255 DOI: 10.1016/J.Cub.2015.07.053 |
0.831 |
|
| 2015 |
Grau-Bové X, Ruiz-Trillo I, Rodriguez-Pascual F. Origin and evolution of lysyl oxidases. Scientific Reports. 5: 10568. PMID 26024311 DOI: 10.1038/Srep10568 |
0.741 |
|
| 2015 |
Alzayady KJ, Sebé-Pedrós A, Chandrasekhar R, Wang L, Ruiz-Trillo I, Yule DI. Tracing the Evolutionary History of Inositol, 1, 4, 5-Trisphosphate Receptor: Insights from Analyses of Capsaspora owczarzaki Ca2+ Release Channel Orthologs. Molecular Biology and Evolution. PMID 25911230 DOI: 10.1093/Molbev/Msv098 |
0.789 |
|
| 2015 |
Grau-Bové X, Sebé-Pedrós A, Ruiz-Trillo I. The eukaryotic ancestor had a complex ubiquitin signaling system of archaeal origin. Molecular Biology and Evolution. 32: 726-39. PMID 25525215 DOI: 10.1093/Molbev/Msu334 |
0.822 |
|
| 2015 |
Mendoza Ad, Suga H, Permanyer J, Irimia M, Ruiz-Trillo I. Author response: Complex transcriptional regulation and independent evolution of fungal-like traits in a relative of animals Elife. DOI: 10.7554/Elife.08904.036 |
0.696 |
|
| 2015 |
Ruiz-Trillo I, Paps J. Acoelomorpha: earliest branching bilaterians or deuterostomes? Organisms Diversity & Evolution. 16: 391-399. DOI: 10.1007/S13127-015-0239-1 |
0.817 |
|
| 2014 |
Del Campo J, Mallo D, Massana R, de Vargas C, Richards TA, Ruiz-Trillo I. Diversity and distribution of unicellular opisthokonts along the European coast analysed using high-throughput sequencing. Environmental Microbiology. PMID 25556908 DOI: 10.1111/1462-2920.12759 |
0.648 |
|
| 2014 |
de Mendoza A, Ruiz-Trillo I. Forward genetics for back-in-time questions. Elife. 3. PMID 25369637 DOI: 10.7554/Elife.05218 |
0.322 |
|
| 2014 |
Del Campo J, Sieracki ME, Molestina R, Keeling P, Massana R, Ruiz-Trillo I. The others: Our biased perspective of eukaryotic genomes Trends in Ecology and Evolution. 29: 252-259. PMID 24726347 DOI: 10.1016/J.Tree.2014.03.006 |
0.715 |
|
| 2014 |
de Mendoza A, Sebé-Pedrós A, Ruiz-Trillo I. The evolution of the GPCR signaling system in eukaryotes: modularity, conservation, and the transition to metazoan multicellularity. Genome Biology and Evolution. 6: 606-19. PMID 24567306 DOI: 10.1093/Gbe/Evu038 |
0.795 |
|
| 2014 |
Sebé-Pedrós A, Grau-Bové X, Richards TA, Ruiz-Trillo I. Evolution and classification of myosins, a paneukaryotic whole-genome approach. Genome Biology and Evolution. 6: 290-305. PMID 24443438 DOI: 10.1093/Gbe/Evu013 |
0.836 |
|
| 2014 |
Desvoyes B, de Mendoza A, Ruiz-Trillo I, Gutierrez C. Novel roles of plant RETINOBLASTOMA-RELATED (RBR) protein in cell proliferation and asymmetric cell division. Journal of Experimental Botany. 65: 2657-66. PMID 24323507 DOI: 10.1093/Jxb/Ert411 |
0.38 |
|
| 2014 |
Suga H, Torruella G, Burger G, Brown MW, Ruiz-Trillo I. Earliest Holozoan expansion of phosphotyrosine signaling. Molecular Biology and Evolution. 31: 517-28. PMID 24307687 DOI: 10.1093/Molbev/Mst241 |
0.803 |
|
| 2013 |
Sebé-Pedrós A, Irimia M, Del Campo J, Parra-Acero H, Russ C, Nusbaum C, Blencowe BJ, Ruiz-Trillo I. Regulated aggregative multicellularity in a close unicellular relative of metazoa. Elife. 2: e01287. PMID 24368732 DOI: 10.7554/Elife.01287 |
0.797 |
|
| 2013 |
de Mendoza A, Sebé-Pedrós A, Šestak MS, Matejcic M, Torruella G, Domazet-Loso T, Ruiz-Trillo I. Transcription factor evolution in eukaryotes and the assembly of the regulatory toolkit in multicellular lineages. Proceedings of the National Academy of Sciences of the United States of America. 110: E4858-66. PMID 24277850 DOI: 10.1073/Pnas.1311818110 |
0.817 |
|
| 2013 |
Sebé-Pedrós A, Ariza-Cosano A, Weirauch MT, Leininger S, Yang A, Torruella G, Adamski M, Adamska M, Hughes TR, Gómez-Skarmeta JL, Ruiz-Trillo I. Early evolution of the T-box transcription factor family. Proceedings of the National Academy of Sciences of the United States of America. 110: 16050-5. PMID 24043797 DOI: 10.1073/Pnas.1309748110 |
0.784 |
|
| 2013 |
Suga H, Chen Z, de Mendoza A, Sebé-Pedrós A, Brown MW, Kramer E, Carr M, Kerner P, Vervoort M, Sánchez-Pons N, Torruella G, Derelle R, Manning G, Lang BF, Russ C, ... ... Ruiz-Trillo I, et al. The Capsaspora genome reveals a complex unicellular prehistory of animals. Nature Communications. 4: 2325. PMID 23942320 DOI: 10.1038/Ncomms3325 |
0.816 |
|
| 2013 |
MartÃn-Durán JM, de Mendoza A, Sebé-Pedrós A, Ruiz-Trillo I, Hejnol A. A broad genomic survey reveals multiple origins and frequent losses in the evolution of respiratory hemerythrins and hemocyanins. Genome Biology and Evolution. 5: 1435-42. PMID 23843190 DOI: 10.1093/Gbe/Evt102 |
0.437 |
|
| 2013 |
Sebé-Pedrós A, Burkhardt P, Sánchez-Pons N, Fairclough SR, Lang BF, King N, Ruiz-Trillo I. Insights into the origin of metazoan filopodia and microvilli. Molecular Biology and Evolution. 30: 2013-23. PMID 23770652 DOI: 10.1093/Molbev/Mst110 |
0.814 |
|
| 2013 |
Grau-Bové X, Sebé-Pedrós A, Ruiz-Trillo I. A genomic survey of HECT ubiquitin ligases in eukaryotes reveals independent expansions of the HECT system in several lineages. Genome Biology and Evolution. 5: 833-47. PMID 23563970 DOI: 10.1093/Gbe/Evt052 |
0.823 |
|
| 2013 |
Suga H, Ruiz-Trillo I. Development of ichthyosporeans sheds light on the origin of metazoan multicellularity. Developmental Biology. 377: 284-92. PMID 23333946 DOI: 10.1016/J.Ydbio.2013.01.009 |
0.748 |
|
| 2013 |
del Campo J, Ruiz-Trillo I. Environmental survey meta-analysis reveals hidden diversity among unicellular opisthokonts. Molecular Biology and Evolution. 30: 802-5. PMID 23329685 DOI: 10.1093/Molbev/Mst006 |
0.446 |
|
| 2013 |
Paps J, Medina-Chacón LA, Marshall W, Suga H, Ruiz-Trillo I. Molecular phylogeny of unikonts: new insights into the position of apusomonads and ancyromonads and the internal relationships of opisthokonts. Protist. 164: 2-12. PMID 23083534 DOI: 10.1016/J.Protis.2012.09.002 |
0.833 |
|
| 2013 |
Sebé-Pedrós A, Irimia M, Campo Jd, Parra-Acero H, Russ C, Nusbaum C, Blencowe BJ, Ruiz-Trillo I. Author response: Regulated aggregative multicellularity in a close unicellular relative of metazoa Elife. DOI: 10.7554/Elife.01287.022 |
0.772 |
|
| 2012 |
Schultheiss KP, Suga H, Ruiz-Trillo I, Miller WT. Lack of Csk-mediated negative regulation in a unicellular SRC kinase. Biochemistry. 51: 8267-77. PMID 22998693 DOI: 10.1021/Bi300965H |
0.654 |
|
| 2012 |
Sebé-Pedrós A, Zheng Y, Ruiz-Trillo I, Pan D. Premetazoan origin of the hippo signaling pathway. Cell Reports. 1: 13-20. PMID 22832104 DOI: 10.1016/J.Celrep.2011.11.004 |
0.814 |
|
| 2012 |
Suga H, Dacre M, de Mendoza A, Shalchian-Tabrizi K, Manning G, Ruiz-Trillo I. Genomic survey of premetazoans shows deep conservation of cytoplasmic tyrosine kinases and multiple radiations of receptor tyrosine kinases. Science Signaling. 5: ra35. PMID 22550341 DOI: 10.1126/Scisignal.2002733 |
0.684 |
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| 2012 |
Shadwick JD, Ruiz-Trillo I. A genomic survey shows that the haloarchaeal type tyrosyl tRNA synthetase is not a synapomorphy of opisthokonts. European Journal of Protistology. 48: 89-93. PMID 22209425 DOI: 10.1016/J.Ejop.2011.10.003 |
0.8 |
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| 2012 |
Torruella G, Derelle R, Paps J, Lang BF, Roger AJ, Shalchian-Tabrizi K, Ruiz-Trillo I. Phylogenetic relationships within the Opisthokonta based on phylogenomic analyses of conserved single-copy protein domains. Molecular Biology and Evolution. 29: 531-44. PMID 21771718 DOI: 10.1093/Molbev/Msr185 |
0.809 |
|
| 2011 |
de Mendoza A, Ruiz-Trillo I. New genomes, new taxa and deep questions in the eukaryotic tree of life: a meeting report on the EMBO comparative genomics conference. Evodevo. 2: 22. PMID 22107916 DOI: 10.1186/2041-9139-2-22 |
0.395 |
|
| 2011 |
Schlüter A, Ruiz-Trillo I, Pujol A. Phylogenomic evidence for a myxococcal contribution to the mitochondrial fatty acid beta-oxidation. Plos One. 6: e21989. PMID 21760940 DOI: 10.1371/Journal.Pone.0021989 |
0.418 |
|
| 2011 |
de Mendoza A, Ruiz-Trillo I. The mysterious evolutionary origin for the GNE gene and the root of bilateria. Molecular Biology and Evolution. 28: 2987-91. PMID 21616910 DOI: 10.1093/Molbev/Msr142 |
0.453 |
|
| 2011 |
Young SL, Diolaiti D, Conacci-Sorrell M, Ruiz-Trillo I, Eisenman RN, King N. Premetazoan ancestry of the Myc-Max network. Molecular Biology and Evolution. 28: 2961-71. PMID 21571926 DOI: 10.1093/Molbev/Msr132 |
0.378 |
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| 2011 |
Sebé-Pedrós A, de Mendoza A, Lang BF, Degnan BM, Ruiz-Trillo I. Unexpected repertoire of metazoan transcription factors in the unicellular holozoan Capsaspora owczarzaki. Molecular Biology and Evolution. 28: 1241-54. PMID 21087945 DOI: 10.1093/Molbev/Msq309 |
0.467 |
|
| 2010 |
Sebé-Pedrós A, Ruiz-Trillo I. Integrin-mediated adhesion complex: Cooption of signaling systems at the dawn of Metazoa. Communicative & Integrative Biology. 3: 475-7. PMID 21057645 DOI: 10.4161/Cib.3.5.12603 |
0.804 |
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| 2010 |
Barberà MJ, Ruiz-Trillo I, Tufts JY, Bery A, Silberman JD, Roger AJ. Sawyeria marylandensis (Heterolobosea) has a hydrogenosome with novel metabolic properties. Eukaryotic Cell. 9: 1913-24. PMID 21037180 DOI: 10.1128/Ec.00122-10 |
0.794 |
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| 2010 |
Sebé-Pedrós A, Roger AJ, Lang FB, King N, Ruiz-Trillo I. Ancient origin of the integrin-mediated adhesion and signaling machinery. Proceedings of the National Academy of Sciences of the United States of America. 107: 10142-7. PMID 20479219 DOI: 10.1073/Pnas.1002257107 |
0.831 |
|
| 2010 |
de Mendoza A, Suga H, Ruiz-Trillo I. Evolution of the MAGUK protein gene family in premetazoan lineages. Bmc Evolutionary Biology. 10: 93. PMID 20359327 DOI: 10.1186/1471-2148-10-93 |
0.739 |
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| 2009 |
Torruella G, Suga H, Riutort M, Peretó J, Ruiz-Trillo I. The evolutionary history of lysine biosynthesis pathways within eukaryotes. Journal of Molecular Evolution. 69: 240-8. PMID 19669682 DOI: 10.1007/S00239-009-9266-X |
0.809 |
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| 2008 |
Ruiz-Trillo I, Roger AJ, Burger G, Gray MW, Lang BF. A phylogenomic investigation into the origin of metazoa. Molecular Biology and Evolution. 25: 664-72. PMID 18184723 DOI: 10.1093/Molbev/Msn006 |
0.731 |
|
| 2008 |
Bapteste E, Susko E, Leigh J, Ruiz-Trillo I, Bucknam J, Doolittle WF. Alternative methods for concatenation of core genes indicate a lack of resolution in deep nodes of the prokaryotic phylogeny. Molecular Biology and Evolution. 25: 83-91. PMID 17940208 DOI: 10.1093/Molbev/Msm229 |
0.806 |
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| 2007 |
Ruiz-Trillo I, Burger G, Holland PW, King N, Lang BF, Roger AJ, Gray MW. The origins of multicellularity: a multi-taxon genome initiative. Trends in Genetics : Tig. 23: 113-8. PMID 17275133 DOI: 10.1016/J.Tig.2007.01.005 |
0.778 |
|
| 2006 |
Ruiz-Trillo I, Lane CE, Archibald JM, Roger AJ. Insights into the evolutionary origin and genome architecture of the unicellular opisthokonts Capsaspora owczarzaki and Sphaeroforma arctica. The Journal of Eukaryotic Microbiology. 53: 379-84. PMID 16968456 DOI: 10.1111/J.1550-7408.2006.00118.X |
0.707 |
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| 2004 |
Ruiz-Trillo I, Inagaki Y, Davis LA, Sperstad S, Landfald B, Roger AJ. Capsaspora owczarzaki is an independent opisthokont lineage. Current Biology : Cb. 14: R946-7. PMID 15556849 DOI: 10.1016/J.Cub.2004.10.037 |
0.753 |
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| 2004 |
Ruiz-Trillo I, Riutort M, Fourcade HM, Baguñà J, Boore JL. Mitochondrial genome data support the basal position of Acoelomorpha and the polyphyly of the Platyhelminthes. Molecular Phylogenetics and Evolution. 33: 321-32. PMID 15336667 DOI: 10.1016/J.Ympev.2004.06.002 |
0.816 |
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| 2002 |
Ruiz-Trillo I, Paps J, Loukota M, Ribera C, Jondelius U, Baguna J, Riutort M. A phylogenetic analysis of myosin heavy chain type II sequences corroborates that Acoela and Nemertodermatida are basal bilaterians. Proceedings of the National Academy of Sciences of the United States of America. 99: 11246-51. PMID 12177440 DOI: 10.1073/Pnas.172390199 |
0.793 |
|
| 2001 |
Baguñà J, Ruiz-Trillo I, Paps J, Loukota M, Ribera C, Jondelius U, Riutort M. The first bilaterian organisms: simple or complex? New molecular evidence The International Journal of Developmental Biology. 45. DOI: 10.1387/Ijdb.01450133 |
0.816 |
|
| 1999 |
Ruiz-Trillo I, Riutort M, Littlewood DT, Herniou EA, Baguña J. Acoel flatworms: earliest extant bilaterian Metazoans, not members of Platyhelminthes. Science (New York, N.Y.). 283: 1919-23. PMID 10082465 DOI: 10.1126/Science.283.5409.1919 |
0.821 |
|
| 1999 |
Carranza S, Littlewood DT, Clough KA, Ruiz-Trillo I, Baguñà J, Riutort M. A robust molecular phylogeny of the Tricladida (Platyhelminthes: Seriata) with a discussion on morphological synapomorphies. Proceedings. Biological Sciences. 265: 631-40. PMID 9881470 DOI: 10.1098/Rspb.1998.0341 |
0.815 |
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