☰

Arun Prasad Pandurangan, Ph.D. - Publications

Affiliations: 
2009-2015 Biological Sciences Birkbeck College, University of London, London, England, United Kingdom 
 2015-2016 Biochemistry University of Cambridge, Cambridge, England, United Kingdom 
 2017- Structural Studies MRC Laboratory of Molecular Biology, Cambridge, England, United Kingdom 
Area:
Drug design, Structure prediction, Cryo EM modelling, Mutation analysis, peptide docking, Genome structural annotation
Website:
https://scholar.google.co.uk/citations?user=vi-VM9AAAAAJ&hl=en
Tree Info Similar researchers PubMed Report error

23 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Ruis C, Weimann A, Tonkin-Hill G, Pandurangan AP, Matuszewska M, Murray GGR, Lévesque RC, Blundell TL, Floto RA, Parkhill J. Mutational spectra are associated with bacterial niche. Nature Communications. 14: 7091. PMID 37925514 DOI: 10.1038/s41467-023-42916-w  0.391
2023 Seif-El-Dahan M, Kefala-Stavridi A, Frit P, Hardwick SW, Chirgadze DY, Maia De Oliviera T, Britton S, Barboule N, Bossaert M, Pandurangan AP, Meek K, Blundell TL, Ropars V, Calsou P, Charbonnier JB, et al. PAXX binding to the NHEJ machinery explains functional redundancy with XLF. Science Advances. 9: eadg2834. PMID 37256950 DOI: 10.1126/sciadv.adg2834  0.648
2023 Dasoondi RS, Blundell TL, Pandurangan AP. analyses of isoniazid and streptomycin resistance-associated mutations in . Computational and Structural Biotechnology Journal. 21: 1874-1884. PMID 36915381 DOI: 10.1016/j.csbj.2023.02.035  0.44
2023 Lu C, Zaucha J, Gam R, Fang H, Oates ME, Bernabe-Rubio M, Williams J, Zelenka N, Pandurangan AP, Tandon H, Shihab H, Kalaivani R, Sung M, Sardar AJ, Tzovoras BG, et al. Hypothesis-free phenotype prediction within a genetics-first framework. Nature Communications. 14: 919. PMID 36808136 DOI: 10.1038/s41467-023-36634-6  0.549
2020 Waman VP, Blundell TL, Buchan DWA, Gough J, Jones D, Kelley L, Murzin A, Pandurangan AP, Sillitoe I, Sternberg M, Torres P, Orengo C. The Genome3D Consortium for Structural Annotations of Selected Model Organisms. Methods in Molecular Biology (Clifton, N.J.). 2165: 27-67. PMID 32621218 DOI: 10.1007/978-1-0716-0708-4_3  0.727
2020 Mortensen M, Huckvale R, Pandurangan AP, Baker JR, Smart TG. Optopharmacology reveals a differential contribution of native GABA receptors to dendritic and somatic inhibition using azogabazine. Neuropharmacology. 108135. PMID 32445639 DOI: 10.1016/J.Neuropharm.2020.108135  0.474
2019 Sillitoe I, Andreeva A, Blundell TL, Buchan DWA, Finn RD, Gough J, Jones D, Kelley LA, Paysan-Lafosse T, Lam SD, Murzin AG, Pandurangan AP, Salazar GA, Skwark MJ, Sternberg MJE, et al. Genome3D: integrating a collaborative data pipeline to expand the depth and breadth of consensus protein structure annotation. Nucleic Acids Research. PMID 31733063 DOI: 10.1093/Nar/Gkz967  0.737
2019 Pandurangan AP, Blundell TL. Prediction of impacts of mutations on protein structure and interactions: SDM, a statistical approach, and mCSM, using machine learning. Protein Science : a Publication of the Protein Society. PMID 31693276 DOI: 10.1002/pro.3774  0.5
2018 Pandurangan AP, Stahlhacke J, Oates ME, Smithers B, Gough J. The SUPERFAMILY 2.0 database: a significant proteome update and a new webserver. Nucleic Acids Research. PMID 30445555 DOI: 10.1093/Nar/Gky1130  0.583
2018 Mitchell AL, Attwood TK, Babbitt PC, Blum M, Bork P, Bridge A, Brown SD, Chang HY, El-Gebali S, Fraser MI, Gough J, Haft DR, Huang H, Letunic I, Lopez R, ... ... Pandurangan AP, et al. InterPro in 2019: improving coverage, classification and access to protein sequence annotations. Nucleic Acids Research. PMID 30398656 DOI: 10.1093/Nar/Gky1100  0.6
2017 Pandurangan AP, Ochoa-Montaño B, Ascher DB, Blundell TL. SDM: a server for predicting effects of mutations on protein stability. Nucleic Acids Research. PMID 28525590 DOI: 10.1093/nar/gkx439  0.643
2017 Pandurangan AP, Ascher DB, Thomas SE, Blundell TL. Genomes, structural biology and drug discovery: combating the impacts of mutations in genetic disease and antibiotic resistance. Biochemical Society Transactions. 45: 303-311. PMID 28408471 DOI: 10.1042/BST20160422  0.721
2016 Jubb HC, Pandurangan AP, Turner MA, Ochoa-Montaño B, Blundell TL, Ascher DB. Mutations at protein-protein interfaces: Small changes over big surfaces have large impacts on human health. Progress in Biophysics and Molecular Biology. PMID 27913149 DOI: 10.1016/j.pbiomolbio.2016.10.002  0.641
2015 Pandurangan AP, Vasishtan D, Alber F, Topf M. γ-TEMPy: Simultaneous Fitting of Components in 3D-EM Maps of Their Assembly Using a Genetic Algorithm. Structure (London, England : 1993). 23: 2365-76. PMID 26655474 DOI: 10.1016/J.Str.2015.10.013  0.551
2015 Farabella I, Vasishtan D, Joseph AP, Pandurangan AP, Sahota H, Topf M. TEMPy: a Python library for assessment of three-dimensional electron microscopy density fits. Journal of Applied Crystallography. 48: 1314-1323. PMID 26306092 DOI: 10.1107/S1600576715010092  0.556
2014 Leung C, Dudkina NV, Lukoyanova N, Hodel AW, Farabella I, Pandurangan AP, Jahan N, Pires Damaso M, Osmanovi? D, Reboul CF, Dunstone MA, Andrew PW, Lonnen R, Topf M, Saibil HR, et al. Stepwise visualization of membrane pore formation by suilysin, a bacterial cholesterol-dependent cytolysin. Elife. 3: e04247. PMID 25457051 DOI: 10.7554/Elife.04247  0.546
2014 Mortensen M, Iqbal F, Pandurangan AP, Hannan S, Huckvale R, Topf M, Baker JR, Smart TG. Photo-antagonism of the GABAA receptor. Nature Communications. 5: 4454. PMID 25072879 DOI: 10.1038/Ncomms5454  0.61
2014 Pandurangan AP, Shakeel S, Butcher SJ, Topf M. Combined approaches to flexible fitting and assessment in virus capsids undergoing conformational change. Journal of Structural Biology. 185: 427-39. PMID 24333899 DOI: 10.1016/J.Jsb.2013.12.003  0.578
2013 Thalassinos K, Pandurangan AP, Xu M, Alber F, Topf M. Conformational States of macromolecular assemblies explored by integrative structure calculation. Structure (London, England : 1993). 21: 1500-8. PMID 24010709 DOI: 10.1016/J.Str.2013.08.006  0.569
2013 Maurer UE, Zeev-Ben-Mordehai T, Pandurangan AP, Cairns TM, Hannah BP, Whitbeck JC, Eisenberg RJ, Cohen GH, Topf M, Huiskonen JT, Grünewald K. The structure of herpesvirus fusion glycoprotein B-bilayer complex reveals the protein-membrane and lateral protein-protein interaction. Structure (London, England : 1993). 21: 1396-405. PMID 23850455 DOI: 10.1016/J.Str.2013.05.018  0.53
2012 Pandurangan AP, Topf M. RIBFIND: a web server for identifying rigid bodies in protein structures and to aid flexible fitting into cryo EM maps. Bioinformatics (Oxford, England). 28: 2391-3. PMID 22796953 DOI: 10.1093/Bioinformatics/Bts446  0.579
2012 Seitsonen JJ, Shakeel S, Susi P, Pandurangan AP, Sinkovits RS, Hyvönen H, Laurinmäki P, Ylä-Pelto J, Topf M, Hyypiä T, Butcher SJ. Structural analysis of coxsackievirus A7 reveals conformational changes associated with uncoating. Journal of Virology. 86: 7207-15. PMID 22514349 DOI: 10.1128/Jvi.06425-11  0.565
2012 Pandurangan AP, Topf M. Finding rigid bodies in protein structures: Application to flexible fitting into cryoEM maps. Journal of Structural Biology. 177: 520-31. PMID 22079400 DOI: 10.1016/J.Jsb.2011.10.011  0.591
Show low-probability matches.