| Year |
Citation |
Score |
| 2024 |
Böttcher L, Fonseca LL, Laubenbacher RC. Control of Medical Digital Twins with Artificial Neural Networks. Biorxiv : the Preprint Server For Biology. PMID 38562787 DOI: 10.1101/2024.03.18.585589 |
0.532 |
|
| 2024 |
Böttcher L, Fonseca LL, Laubenbacher RC. Control of Medical Digital Twins with Artificial Neural Networks. Arxiv. PMID 38562447 |
0.532 |
|
| 2024 |
Laubenbacher R, Adler F, An G, Castiglione F, Eubank S, Fonseca LL, Glazier J, Helikar T, Jett-Tilton M, Kirschner D, Macklin P, Mehrad B, Moore B, Pasour V, Shmulevich I, et al. Toward mechanistic medical digital twins: some use cases in immunology. Frontiers in Digital Health. 6: 1349595. PMID 38515550 DOI: 10.3389/fdgth.2024.1349595 |
0.498 |
|
| 2024 |
Laubenbacher R, Adler F, An G, Castiglione F, Eubank S, Fonseca LL, Glazier J, Helikar T, Jett-Tilton M, Kirschner D, Macklin P, Mehrad B, Moore B, Pasour V, Shmulevich I, et al. Forum on immune digital twins: a meeting report. Npj Systems Biology and Applications. 10: 19. PMID 38365857 DOI: 10.1038/s41540-024-00345-5 |
0.509 |
|
| 2022 |
DeBarry JD, Nural MV, Pakala SB, Nayak V, Warrenfeltz S, Humphrey J, Lapp SA, Cabrera-Mora M, Brito CFA, Jiang J, Saney CL, Hankus A, Stealey HM, DeBarry MB, Lackman N, ... ... Fonseca LL, et al. MaHPIC malaria systems biology data from Plasmodium cynomolgi sporozoite longitudinal infections in macaques. Scientific Data. 9: 722. PMID 36433985 DOI: 10.1038/s41597-022-01755-y |
0.724 |
|
| 2022 |
Adhikari B, Scindia Y, Sordo Vieira L, de Assis Lopes Ribeiro H, Masison J, Yang N, Fonseca LL, Wheeler M, Knapp AC, Mei Y, Helba B, Atkinson C, Schroeder W, Mehrad B, Laubenbacher R. Computational Modeling of Macrophage Iron Sequestration during Host Defense against Aspergillus. Msphere. e0007422. PMID 35862797 DOI: 10.1128/msphere.00074-22 |
0.521 |
|
| 2022 |
Peterson MS, Joyner CJ, Lapp SA, Brady JA, Wood JS, Cabrera-Mora M, Saney CL, Fonseca LL, Cheng WT, Jiang J, Soderberg SR, Nural MV, Hankus A, Machiah D, Karpuzoglu E, et al. Cytoadhesion Involves SICA Variant Proteins. Frontiers in Cellular and Infection Microbiology. 12: 888496. PMID 35811680 DOI: 10.3389/fcimb.2022.888496 |
0.625 |
|
| 2021 |
Peterson MS, Joyner CJ, Brady JA, Wood JS, Cabrera-Mora M, Saney CL, Fonseca LL, Cheng WT, Jiang J, Lapp SA, Soderberg SR, Nural MV, Humphrey JC, Hankus A, Machiah D, et al. Clinical recovery of Macaca fascicularis infected with Plasmodium knowlesi. Malaria Journal. 20: 486. PMID 34969401 DOI: 10.1186/s12936-021-03925-6 |
0.629 |
|
| 2021 |
Gupta A, Styczynski MP, Galinski MR, Voit EO, Fonseca LL. Dramatic transcriptomic differences in Macaca mulatta and Macaca fascicularis with Plasmodium knowlesi infections. Scientific Reports. 11: 19519. PMID 34593836 DOI: 10.1038/s41598-021-98024-6 |
0.721 |
|
| 2021 |
Dalvi-Garcia F, Fonseca LL, Vasoncelos ATR, Hedin-Pereira C, Voit EO. A model of dopamine and serotonin-kynurenine metabolism in cortisolemia: Implications for depression. Plos Computational Biology. 17: e1008956. PMID 33970902 DOI: 10.1371/journal.pcbi.1008956 |
0.742 |
|
| 2019 |
Olivença DV, Fonseca LL, Voit EO, Pinto FR. Thickness of the airway surface liquid layer in the lung is affected in cystic fibrosis by compromised synergistic regulation of the ENaC ion channel. Journal of the Royal Society, Interface. 16: 20190187. PMID 31455163 DOI: 10.1098/Rsif.2019.0187 |
0.747 |
|
| 2018 |
Downs DM, Bazurto JV, Gupta A, Fonseca LL, Voit EO. The three-legged stool of understanding metabolism: integrating metabolomics with biochemical genetics and computational modeling. Aims Microbiology. 4: 289-303. PMID 31294216 DOI: 10.3934/microbiol.2018.2.289 |
0.727 |
|
| 2018 |
Fonseca LL, Joyner CJ, Saney CL, Moreno A, Barnwell JW, Galinski MR, Voit EO. Analysis of erythrocyte dynamics in Rhesus macaque monkeys during infection with Plasmodium cynomolgi. Malaria Journal. 17: 410. PMID 30400896 DOI: 10.1186/S12936-018-2560-6 |
0.641 |
|
| 2018 |
Faraji M, Fonseca LL, Escamilla-Treviño L, Barros-Rios J, Engle NL, Yang ZK, Tschaplinski TJ, Dixon RA, Voit EO. A dynamic model of lignin biosynthesis in . Biotechnology For Biofuels. 11: 253. PMID 30250505 DOI: 10.1186/S13068-018-1241-6 |
0.734 |
|
| 2018 |
Olivença DV, Uliyakina I, Fonseca LL, Amaral MD, Voit EO, Pinto FR. A Mathematical Model of the Phosphoinositide Pathway. Scientific Reports. 8: 3904. PMID 29500467 DOI: 10.1038/S41598-018-22226-8 |
0.77 |
|
| 2018 |
Faraji M, Fonseca LL, Escamilla-Treviño L, Barros-Rios J, Engle N, Yang ZK, Tschaplinski TJ, Dixon RA, Voit EO. Mathematical models of lignin biosynthesis. Biotechnology For Biofuels. 11: 34. PMID 29449882 DOI: 10.1186/S13068-018-1028-9 |
0.743 |
|
| 2017 |
Tang Y, Gupta A, Garimalla S, Galinski MR, Styczynski MP, Fonseca LL, Voit EO. Metabolic modeling helps interpret Transcriptomic changes during malaria. Biochimica Et Biophysica Acta. PMID 29069611 DOI: 10.1016/J.Bbadis.2017.10.023 |
0.754 |
|
| 2017 |
Fonseca LL, Joyner CJ, Galinski MR, Voit EO. A model of Plasmodium vivax concealment based on Plasmodium cynomolgi infections in Macaca mulatta. Malaria Journal. 16: 375. PMID 28923058 DOI: 10.1186/S12936-017-2008-4 |
0.656 |
|
| 2017 |
Galinski MR, Lapp SA, Peterson MS, Ay F, Joyner CJ, LE Roch KG, Fonseca LL, Voit EO. Plasmodium knowlesi: a superb in vivo nonhuman primate model of antigenic variation in malaria. Parasitology. 1-16. PMID 28712361 DOI: 10.1017/S0031182017001135 |
0.664 |
|
| 2016 |
Dam P, Fonseca LL, Konstantinidis KT, Voit EO. Dynamic models of the complex microbial metapopulation of lake mendota. Npj Systems Biology and Applications. 2: 16007. PMID 28725469 DOI: 10.1038/npjsba.2016.7 |
0.758 |
|
| 2016 |
Fonseca LL, Alezi HS, Moreno A, Barnwell JW, Galinski MR, Voit EO. Quantifying the removal of red blood cells in Macaca mulatta during a Plasmodium coatneyi infection. Malaria Journal. 15: 410. PMID 27520455 DOI: 10.1186/S12936-016-1465-5 |
0.651 |
|
| 2016 |
Chen PW, Fonseca LL, Hannun YA, Voit EO. Analysis of the Involvement of Different Ceramide Variants in the Response to Hydroxyurea Stress in Baker's Yeast. Plos One. 11: e0146839. PMID 26784947 DOI: 10.1371/Journal.Pone.0146839 |
0.755 |
|
| 2016 |
Dolatshahi S, Fonseca LL, Voit EO. New insights into the complex regulation of the glycolytic pathway in Lactococcus lactis. I. Construction and diagnosis of a comprehensive dynamic model. Molecular Biosystems. 12: 23-36. PMID 26609637 DOI: 10.1039/C5Mb00331H |
0.783 |
|
| 2015 |
Dolatshahi S, Fonseca LL, Voit EO. New insights into the complex regulation of the glycolytic pathway in Lactococcus lactis. II. Inference of the precisely timed control system regulating glycolysis. Molecular Biosystems. 12: 37-47. PMID 26609780 DOI: 10.1039/C5Mb00726G |
0.768 |
|
| 2015 |
Faraji M, Fonseca LL, Escamilla-Treviño L, Dixon RA, Voit EO. Computational inference of the structure and regulation of the lignin pathway in Panicum virgatum. Biotechnology For Biofuels. 8: 151. PMID 26388938 DOI: 10.1186/S13068-015-0334-8 |
0.769 |
|
| 2015 |
Fonseca LL, Voit EO. Comparison of mathematical frameworks for modeling erythropoiesis in the context of malaria infection. Mathematical Biosciences. 270: 224-36. PMID 26362230 DOI: 10.1016/J.Mbs.2015.08.020 |
0.656 |
|
| 2015 |
Chen PW, Fonseca LL, Hannun YA, Voit EO. Dynamics of the Heat Stress Response of Ceramides with Different Fatty-Acyl Chain Lengths in Baker's Yeast. Plos Computational Biology. 11: e1004373. PMID 26241868 DOI: 10.1371/Journal.Pcbi.1004373 |
0.764 |
|
| 2014 |
Radoš D, Turner DL, Fonseca LL, Carvalho AL, Blombach B, Eikmanns BJ, Neves AR, Santos H. Carbon flux analysis by 13C nuclear magnetic resonance to determine the effect of CO2 on anaerobic succinate production by Corynebacterium glutamicum. Applied and Environmental Microbiology. 80: 3015-24. PMID 24610842 DOI: 10.1128/Aem.04189-13 |
0.765 |
|
| 2013 |
Carvalho AL, Turner DL, Fonseca LL, Solopova A, Catarino T, Kuipers OP, Voit EO, Neves AR, Santos H. Metabolic and transcriptional analysis of acid stress in Lactococcus lactis, with a focus on the kinetics of lactic acid pools. Plos One. 8: e68470. PMID 23844205 DOI: 10.1371/Journal.Pone.0068470 |
0.736 |
|
| 2013 |
Chen PW, Fonseca LL, Hannun YA, Voit EO. Coordination of rapid sphingolipid responses to heat stress in yeast. Plos Computational Biology. 9: e1003078. PMID 23737740 DOI: 10.1371/Journal.Pcbi.1003078 |
0.776 |
|
| 2013 |
Fonseca CP, Fonseca LL, Montezinho LP, Alves PM, Santos H, Castro MM, Geraldes CF. 23Na multiple quantum filtered NMR characterisation of Na+ binding and dynamics in animal cells: a comparative study and effect of Na+/Li + competition. European Biophysics Journal : Ebj. 42: 503-19. PMID 23563802 DOI: 10.1007/S00249-013-0899-8 |
0.535 |
|
| 2012 |
Fonseca LL, Chen PW, Voit EO. Canonical modeling of the multi-scale regulation of the heat stress response in yeast. Metabolites. 2: 221-41. PMID 24957376 DOI: 10.3390/Metabo2010221 |
0.765 |
|
| 2011 |
Ndukum J, Fonseca LL, Santos H, Voit EO, Datta S. Statistical inference methods for sparse biological time series data. Bmc Systems Biology. 5: 57. PMID 21518445 DOI: 10.1186/1752-0509-5-57 |
0.705 |
|
| 2011 |
Fonseca LL, Sánchez C, Santos H, Voit EO. Complex coordination of multi-scale cellular responses to environmental stress. Molecular Biosystems. 7: 731-41. PMID 21088798 DOI: 10.1039/C0Mb00102C |
0.711 |
|
| 2009 |
Voit EO, Goel G, Chou IC, Fonseca LL. Estimation of metabolic pathway systems from different data sources. Iet Systems Biology. 3: 513-22. PMID 19947777 DOI: 10.1049/Iet-Syb.2008.0180 |
0.775 |
|
| 2009 |
Cerdán S, Sierra A, Fonseca LL, Ballesteros P, Rodrigues TB. The turnover of the H3 deuterons from (2-13C) glutamate and (2-13C) glutamine reveals subcellular trafficking in the brain of partially deuterated rats. Journal of Neurochemistry. 109: 63-72. PMID 19393010 DOI: 10.1111/J.1471-4159.2009.05962.X |
0.565 |
|
| 2009 |
Castro R, Neves AR, Fonseca LL, Pool WA, Kok J, Kuipers OP, Santos H. Characterization of the individual glucose uptake systems of Lactococcus lactis: Mannose-PTS, cellobiose-PTS and the novel GlcU permease Molecular Microbiology. 71: 795-806. PMID 19054326 DOI: 10.1111/J.1365-2958.2008.06564.X |
0.754 |
|
| 2008 |
Jorge CD, Fonseca LL, Boos W, Santos H. Role of periplasmic trehalase in uptake of trehalose by the thermophilic bacterium Rhodothermus marinus. Journal of Bacteriology. 190: 1871-8. PMID 18192391 DOI: 10.1128/Jb.01616-07 |
0.649 |
|
| 2007 |
RamÃrez BG, Rodrigues TB, Violante IR, Cruz F, Fonseca LL, Ballesteros P, Castro MM, GarcÃa-MartÃn ML, Cerdán S. Kinetic properties of the redox switch/redox coupling mechanism as determined in primary cultures of cortical neurons and astrocytes from rat brain. Journal of Neuroscience Research. 85: 3244-53. PMID 17600826 DOI: 10.1002/Jnr.21386 |
0.578 |
|
| 2006 |
Cerdán S, Rodrigues TB, Sierra A, Benito M, Fonseca LL, Fonseca CP, García-Martín ML. The redox switch/redox coupling hypothesis. Neurochemistry International. 48: 523-30. PMID 16530294 DOI: 10.1016/J.Neuint.2005.12.036 |
0.582 |
|
| 2005 |
Fonseca LL, Monteiro MA, Alves PM, Carrondo MJ, Santos H. Cultures of rat astrocytes challenged with a steady supply of glutamate: new model to study flux distribution in the glutamate-glutamine cycle. Glia. 51: 286-96. PMID 15834952 DOI: 10.1002/Glia.20209 |
0.557 |
|
| 2005 |
Sá Santos S, Fonseca LL, Monteiro MA, Carrondo MJ, Alves PM. Culturing primary brain astrocytes under a fully controlled environment in a novel bioreactor. Journal of Neuroscience Research. 79: 26-32. PMID 15602759 DOI: 10.1002/Jnr.20279 |
0.512 |
|
| 2001 |
Fonseca LL, Alves PM, Carrondo MJ, Santos H. Effect of ethanol on the metabolism of primary astrocytes studied by (13)C- and (31)P-NMR spectroscopy. Journal of Neuroscience Research. 66: 803-11. PMID 11746405 DOI: 10.1002/Jnr.10039 |
0.566 |
|
| 2000 |
Alves PM, Fonseca LL, Peixoto CC, Almeida AC, Carrondo MJ, Santos H. NMR studies on energy metabolism of immobilized primary neurons and astrocytes during hypoxia, ischemia and hypoglycemia. Nmr in Biomedicine. 13: 438-48. PMID 11252029 DOI: 10.1002/Nbm.665 |
0.562 |
|
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