Kiyokazu Agata - Publications

Affiliations: 
Department of Biophysics Kyoto University (Japan) 

42 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Matsunami M, Suzuki M, Haramoto Y, Fukui A, Inoue T, Yamaguchi K, Uchiyama I, Mori K, Tashiro K, Ito Y, Takeuchi T, Suzuki KT, Agata K, Shigenobu S, Hayashi T. A comprehensive reference transcriptome resource for the Iberian ribbed newt Pleurodeles waltl, an emerging model for developmental and regeneration biology. Dna Research : An International Journal For Rapid Publication of Reports On Genes and Genomes. PMID 31006799 DOI: 10.1093/dnares/dsz003  0.32
2019 Cao PL, Kumagai N, Inoue T, Agata K, Makino T. JmjC domain-encoding genes are conserved in highly regenerative metazoans and are associated with planarian whole-body regeneration. Genome Biology and Evolution. PMID 30698705 DOI: 10.1093/gbe/evz021  0.32
2018 Akiyama Y, Agata K, Inoue T. Coordination between binocular field and spontaneous self-motion specifies the efficiency of planarians' photo-response orientation behavior. Communications Biology. 1: 148. PMID 30272024 DOI: 10.1038/s42003-018-0151-2  0.32
2018 Suzuki M, Hayashi T, Inoue T, Agata K, Hirayama M, Suzuki M, Shigenobu S, Takeuchi T, Yamamoto T, Suzuki KT. Cas9 ribonucleoprotein complex allows direct and rapid analysis of coding and noncoding regions of target genes in Pleurodeles waltl development and regeneration. Developmental Biology. PMID 30213538 DOI: 10.1016/j.ydbio.2018.09.008  0.32
2018 An Y, Kawaguchi A, Zhao C, Toyoda A, Sharifi-Zarchi A, Mousavi SA, Bagherzadeh R, Inoue T, Ogino H, Fujiyama A, Chitsaz H, Baharvand H, Agata K. Draft genome of provides insights into conserved regulatory elements of the brain restriction gene in planarians. Zoological Letters. 4: 24. PMID 30181897 DOI: 10.1186/s40851-018-0102-2  0.32
2018 Urata Y, Yamashita W, Inoue T, Agata K. Spatio-temporal neural stem cell behavior that leads to both perfect and imperfect structural brain regeneration in adult newts. Biology Open. PMID 29903864 DOI: 10.1242/bio.033142  0.32
2018 Hosoda K, Motoishi M, Kunimoto T, Nishimura O, Hwang B, Kobayashi S, Yazawa S, Mochii M, Agata K, Umesono Y. Role of MEKK1 in the anterior-posterior patterning during planarian regeneration. Development, Growth & Differentiation. PMID 29900546 DOI: 10.1111/dgd.12541  0.64
2017 Fraguas S, Umesono Y, Agata K, Cebrià F. Analyzing pERK Activation During Planarian Regeneration. Methods in Molecular Biology (Clifton, N.J.). 1487: 303-315. PMID 27924577 DOI: 10.1007/978-1-4939-6424-6_23  0.64
2016 Tsutsumi R, Yamada S, Agata K. Functional joint regeneration is achieved using reintegration mechanism in Xenopus laevis. Regeneration (Oxford, England). 3: 26-38. PMID 27499877 DOI: 10.1002/reg2.49  0.48
2016 Shimoyama S, Inoue T, Kashima M, Agata K. Multiple Neuropeptide-Coding Genes Involved in Planarian Pharynx Extension. Zoological Science. 33: 311-9. PMID 27268986 DOI: 10.2108/zs150170  0.32
2016 Hosoda K, Morimoto M, Motoishi M, Nishimura O, Agata K, Umesono Y. Simple blood-feeding method for live imaging of gut tube remodeling in regenerating planarians. Development, Growth & Differentiation. PMID 26948408 DOI: 10.1111/dgd.12270  0.64
2015 Tsutsumi R, Inoue T, Yamada S, Agata K. Reintegration of the regenerated and the remaining tissues during joint regeneration in the newt Cynops pyrrhogaster. Regeneration (Oxford, England). 2: 26-36. PMID 27499865 DOI: 10.1002/reg2.28  0.48
2015 Cross SD, Johnson AA, Gilles BJ, Bachman LA, Inoue T, Agata K, Marmorstein LY, Marmorstein AD. Control of Maintenance and Regeneration of Planarian Eyes by ovo. Investigative Ophthalmology & Visual Science. 56: 7604-10. PMID 26618653 DOI: 10.1167/iovs.15-17458  0.32
2015 Inoue T, Hoshino H, Yamashita T, Shimoyama S, Agata K. Planarian shows decision-making behavior in response to multiple stimuli by integrative brain function. Zoological Letters. 1: 7. PMID 26605052 DOI: 10.1186/s40851-014-0010-z  0.32
2015 Nishimura O, Hosoda K, Kawaguchi E, Yazawa S, Hayashi T, Inoue T, Umesono Y, Agata K. Unusually Large Number of Mutations in Asexually Reproducing Clonal Planarian Dugesia japonica. Plos One. 10: e0143525. PMID 26588467 DOI: 10.1371/journal.pone.0143525  0.64
2015 Akiyama Y, Agata K, Inoue T. Spontaneous Behaviors and Wall-Curvature Lead to Apparent Wall Preference in Planarian. Plos One. 10: e0142214. PMID 26539715 DOI: 10.1371/journal.pone.0142214  0.32
2015 Hayashi S, Kawaguchi A, Uchiyama I, Kawasumi-Kita A, Kobayashi T, Nishide H, Tsutsumi R, Tsuru K, Inoue T, Ogino H, Agata K, Tamura K, Yokoyama H. Epigenetic modification maintains intrinsic limb-cell identity in Xenopus limb bud regeneration. Developmental Biology. 406: 271-82. PMID 26282893 DOI: 10.1016/j.ydbio.2015.08.013  0.48
2015 Hwang B, An Y, Agata K, Umesono Y. Two distinct roles of the yorkie/yap gene during homeostasis in the planarian Dugesia japonica. Development, Growth & Differentiation. 57: 209-17. PMID 25708270 DOI: 10.1111/dgd.12195  0.64
2014 Inoue T, Yamashita T, Agata K. Thermosensory signaling by TRPM is processed by brain serotonergic neurons to produce planarian thermotaxis. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 34: 15701-14. PMID 25411498 DOI: 10.1523/JNEUROSCI.5379-13.2014  0.32
2014 Agata K, Tasaki J, Nakajima E, Umesono Y. Recent identification of an ERK signal gradient governing planarian regeneration. Zoology (Jena, Germany). 117: 161-2. PMID 24854393 DOI: 10.1016/j.zool.2014.04.001  0.64
2014 Hayashi T, Sakamoto K, Sakuma T, Yokotani N, Inoue T, Kawaguchi E, Agata K, Yamamoto T, Takeuchi T. Transcription activator-like effector nucleases efficiently disrupt the target gene in Iberian ribbed newts (Pleurodeles waltl), an experimental model animal for regeneration. Development, Growth & Differentiation. 56: 115-21. PMID 24329771 DOI: 10.1111/dgd.12103  0.32
2013 Umesono Y, Tasaki J, Nishimura Y, Hrouda M, Kawaguchi E, Yazawa S, Nishimura O, Hosoda K, Inoue T, Agata K. The molecular logic for planarian regeneration along the anterior-posterior axis. Nature. 500: 73-6. PMID 23883928 DOI: 10.1038/nature12359  0.64
2013 Rouhana L, Weiss JA, Forsthoefel DJ, Lee H, King RS, Inoue T, Shibata N, Agata K, Newmark PA. RNA interference by feeding in vitro-synthesized double-stranded RNA to planarians: methodology and dynamics. Developmental Dynamics : An Official Publication of the American Association of Anatomists. 242: 718-30. PMID 23441014 DOI: 10.1002/dvdy.23950  0.32
2012 Inoue T, Inoue R, Tsutsumi R, Tada K, Urata Y, Michibayashi C, Takemura S, Agata K. Lens regenerates by means of similar processes and timeline in adults and larvae of the newt Cynops pyrrhogaster. Developmental Dynamics : An Official Publication of the American Association of Anatomists. 241: 1575-83. PMID 22930574 DOI: 10.1002/dvdy.23854  0.48
2012 Agata K, Inoue T. Survey of the differences between regenerative and non-regenerative animals. Development, Growth & Differentiation. 54: 143-52. PMID 22348224 DOI: 10.1111/j.1440-169X.2011.01323.x  0.32
2011 Nishimura K, Inoue T, Yoshimoto K, Taniguchi T, Kitamura Y, Agata K. Regeneration of dopaminergic neurons after 6-hydroxydopamine-induced lesion in planarian brain. Journal of Neurochemistry. 119: 1217-31. PMID 21985107 DOI: 10.1111/j.1471-4159.2011.07518.x  0.32
2011 Umesono Y, Tasaki J, Nishimura K, Inoue T, Agata K. Regeneration in an evolutionarily primitive brain--the planarian Dugesia japonica model. The European Journal of Neuroscience. 34: 863-9. PMID 21929621 DOI: 10.1111/j.1460-9568.2011.07819.x  0.64
2011 Tasaki J, Shibata N, Nishimura O, Itomi K, Tabata Y, Son F, Suzuki N, Araki R, Abe M, Agata K, Umesono Y. ERK signaling controls blastema cell differentiation during planarian regeneration. Development (Cambridge, England). 138: 2417-27. PMID 21610023 DOI: 10.1242/dev.060764  0.64
2011 Tasaki J, Shibata N, Sakurai T, Agata K, Umesono Y. Role of c-Jun N-terminal kinase activation in blastema formation during planarian regeneration. Development, Growth & Differentiation. 53: 389-400. PMID 21447099 DOI: 10.1111/j.1440-169X.2011.01254.x  0.64
2009 Yazawa S, Umesono Y, Hayashi T, Tarui H, Agata K. Planarian Hedgehog/Patched establishes anterior-posterior polarity by regulating Wnt signaling. Proceedings of the National Academy of Sciences of the United States of America. 106: 22329-34. PMID 20018728 DOI: 10.1073/pnas.0907464106  0.64
2009 Umesono Y, Agata K. Evolution and regeneration of the planarian central nervous system. Development, Growth & Differentiation. 51: 185-95. PMID 19379275 DOI: 10.1111/j.1440-169X.2009.01099.x  0.64
2008 Nishimura K, Kitamura Y, Inoue T, Umesono Y, Yoshimoto K, Taniguchi T, Agata K. Characterization of tyramine beta-hydroxylase in planarian Dugesia japonica: cloning and expression. Neurochemistry International. 53: 184-92. PMID 18926867 DOI: 10.1016/j.neuint.2008.09.006  0.64
2008 Agata K, Umesono Y. Brain regeneration from pluripotent stem cells in planarian. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 363: 2071-8. PMID 18375378 DOI: 10.1098/rstb.2008.2260  0.64
2007 Nishimura K, Kitamura Y, Inoue T, Umesono Y, Yoshimoto K, Takeuchi K, Taniguchi T, Agata K. Identification and distribution of tryptophan hydroxylase (TPH)-positive neurons in the planarian Dugesia japonica. Neuroscience Research. 59: 101-6. PMID 17624455 DOI: 10.1016/j.neures.2007.05.014  0.64
2007 Nishimura K, Kitamura Y, Inoue T, Umesono Y, Sano S, Yoshimoto K, Inden M, Takata K, Taniguchi T, Shimohama S, Agata K. Reconstruction of dopaminergic neural network and locomotion function in planarian regenerates. Developmental Neurobiology. 67: 1059-78. PMID 17565705 DOI: 10.1002/dneu.20377  0.64
2007 Takano T, Pulvers JN, Inoue T, Tarui H, Sakamoto H, Agata K, Umesono Y. Regeneration-dependent conditional gene knockdown (Readyknock) in planarian: demonstration of requirement for Djsnap-25 expression in the brain for negative phototactic behavior. Development, Growth & Differentiation. 49: 383-94. PMID 17547648 DOI: 10.1111/j.1440-169X.2007.00936.x  0.64
2007 Inoue T, Hayashi T, Takechi K, Agata K. Clathrin-mediated endocytic signals are required for the regeneration of, as well as homeostasis in, the planarian CNS. Development (Cambridge, England). 134: 1679-89. PMID 17376807 DOI: 10.1242/dev.02835  0.32
2003 Mineta K, Nakazawa M, Cebrià F, Ikeo K, Agata K, Gojobori T. Origin and evolutionary process of the CNS elucidated by comparative genomics analysis of planarian ESTs Proceedings of the National Academy of Sciences of the United States of America. 100: 7666-7671. PMID 12802012 DOI: 10.1073/pnas.1332513100  0.64
2003 Nakazawa M, Cebrià F, Mineta K, Ikeo K, Agata K, Gojobori T. Search for the evolutionary origin of a brain: Planarian brain characterized by microarray Molecular Biology and Evolution. 20: 784-791. PMID 12679532 DOI: 10.1093/molbev/msg086  0.64
2002 Cebrià F, Kobayashi C, Umesono Y, Nakazawa M, Mineta K, Ikeo K, Gojobori T, Itoh M, Taira M, Sánchez Alvarado A, Agata K. FGFR-related gene nou-darake restricts brain tissues to the head region of planarians. Nature. 419: 620-4. PMID 12374980 DOI: 10.1038/nature01042  0.64
2002 Cebrià F, Kudome T, Nakazawa M, Mineta K, Ikeo K, Gojobori T, Agata K. The expression of neural-specific genes reveals the structural and molecular complexity of the planarian central nervous system. Mechanisms of Development. 116: 199-204. PMID 12128224  0.64
2002 Cebrià F, Nakazawa M, Mineta K, Ikeo K, Gojobori T, Agata K. Dissecting planarian central nervous system regeneration by the expression of neural-specific genes. Development, Growth & Differentiation. 44: 135-46. PMID 11940100  0.64
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