Daan Noordermeer, Ph.D. - Publications

Affiliations: 
Centre de Génétique Moleculaire CNRS, Paris, Île-de-France, France 
Area:
chromatin organization

18/32 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2017 Fabre PJ, Leleu M, Mormann BH, Lopez-Delisle L, Noordermeer D, Beccari L, Duboule D. Large scale genomic reorganization of topological domains at the HoxD locus. Genome Biology. 18: 149. PMID 28784160 DOI: 10.1186/S13059-017-1278-Z  0.68
2015 Vieux-Rochas M, Fabre PJ, Leleu M, Duboule D, Noordermeer D. Clustering of mammalian Hox genes with other H3K27me3 targets within an active nuclear domain. Proceedings of the National Academy of Sciences of the United States of America. 112: 4672-7. PMID 25825760 DOI: 10.1073/Pnas.1504783112  0.96
2014 Ghavi-Helm Y, Klein FA, Pakozdi T, Ciglar L, Noordermeer D, Huber W, Furlong EE. Enhancer loops appear stable during development and are associated with paused polymerase. Nature. 512: 96-100. PMID 25043061 DOI: 10.1038/Nature13417  0.96
2014 Noordermeer D, Leleu M, Schorderet P, Joye E, Chabaud F, Duboule D. Temporal dynamics and developmental memory of 3D chromatin architecture at Hox gene loci. Elife. 3: e02557. PMID 24843030 DOI: 10.7554/Elife.02557  0.68
2014 David FPA, Delafontaine J, Carat S, Ross FJ, Lefebvre G, Jarosz Y, Sinclair L, Noordermeer D, Rougemont J, Leleu M. HTSstation: A web application and open-access libraries for high-throughput sequencing data analysis Plos One. 9. PMID 24475057 DOI: 10.1371/Journal.Pone.0085879  0.96
2014 Woltering JM, Noordermeer D, Leleu M, Duboule D. Conservation and divergence of regulatory strategies at Hox Loci and the origin of tetrapod digits. Plos Biology. 12: e1001773. PMID 24465181 DOI: 10.1371/Journal.Pbio.1001773  0.96
2014 Noordermeer D, Leleu M, Schorderet P, Joye E, Chabaud F, Duboule D. Author response: Temporal dynamics and developmental memory of 3D chromatin architecture at Hox gene loci Elife. DOI: 10.7554/Elife.02557.024  0.68
2014 Noordermeer D, Leleu M, Schorderet P, Joye E, Chabaud F, Duboule D. Temporal dynamics and developmental memory of 3D chromatin architecture at Hox gene loci Elife. 2014. DOI: 10.7554/eLife.02557  0.96
2013 Noordermeer D, Duboule D. Chromatin looping and organization at developmentally regulated gene loci. Wiley Interdisciplinary Reviews. Developmental Biology. 2: 615-30. PMID 24014450 DOI: 10.1002/Wdev.103  0.96
2013 Andrey G, Montavon T, Mascrez B, Gonzalez F, Noordermeer D, Leleu M, Trono D, Spitz F, Duboule D. A switch between topological domains underlies HoxD genes collinearity in mouse limbs. Science (New York, N.Y.). 340: 1234167. PMID 23744951 DOI: 10.1126/Science.1234167  0.96
2013 Noordermeer D, Duboule D. Chromatin architectures and Hox gene collinearity. Current Topics in Developmental Biology. 104: 113-48. PMID 23587240 DOI: 10.1016/B978-0-12-416027-9.00004-8  0.96
2012 Gheldof N, Leleu M, Noordermeer D, Rougemont J, Reymond A. Detecting long-range chromatin interactions using the chromosome conformation capture sequencing (4C-seq) method Methods in Molecular Biology. 786: 211-225. PMID 21938629 DOI: 10.1007/978-1-61779-292-2_13  0.96
2011 Noordermeer D, Leleu M, Splinter E, Rougemont J, De Laat W, Duboule D. The dynamic architecture of Hox gene clusters. Science (New York, N.Y.). 334: 222-5. PMID 21998387 DOI: 10.1126/Science.1207194  0.96
2011 Noordermeer D, de Wit E, Klous P, van de Werken H, Simonis M, Lopez-Jones M, Eussen B, de Klein A, Singer RH, de Laat W. Variegated gene expression caused by cell-specific long-range DNA interactions. Nature Cell Biology. 13: 944-51. PMID 21706023 DOI: 10.1038/Ncb2278  0.96
2008 Noordermeer D, De Laat W. Joining the loops: β-globin gene regulation Iubmb Life. 60: 824-833. PMID 18767169 DOI: 10.1002/Iub.129  0.96
2008 Noordermeer D, Branco MR, Splinter E, Klous P, Van Ijcken W, Swagemakers S, Koutsourakis M, Van Der Spek P, Pombo A, De Laat W. Transcription and chromatin organization of a housekeeping gene cluster containing an integrated β-globin locus control region Plos Genetics. 4. PMID 18369441 DOI: 10.1371/Journal.Pgen.1000016  0.96
2008 de Laat W, Klous P, Kooren J, Noordermeer D, Palstra RJ, Simonis M, Splinter E, Grosveld F. Three-dimensional organization of gene expression in erythroid cells. Current Topics in Developmental Biology. 82: 117-39. PMID 18282519 DOI: 10.1016/S0070-2153(07)00005-1  0.96
2006 Bok JW, Noordermeer D, Kale SP, Keller NP. Secondary metabolic gene cluster silencing in Aspergillus nidulans. Molecular Microbiology. 61: 1636-45. PMID 16968230 DOI: 10.1111/J.1365-2958.2006.05330.X  0.96
Low-probability matches
2016 Ghavi-Helm Y, Klein FA, Pakozdi T, Ciglar L, Noordermeer D, Huber W, Furlong EE. Corrigendum: Enhancer loops appear stable during development and are associated with paused polymerase. Nature. PMID 27409805 DOI: 10.1038/Nature18962  0.08
2020 Noordermeer D, Feil R. Differential 3D chromatin organization and gene activity in genomic imprinting. Current Opinion in Genetics & Development. 61: 17-24. PMID 32299027 DOI: 10.1016/J.Gde.2020.03.004  0.04
2019 Llères D, Moindrot B, Pathak R, Piras V, Matelot M, Pignard B, Marchand A, Poncelet M, Perrin A, Tellier V, Feil R, Noordermeer D. CTCF modulates allele-specific sub-TAD organization and imprinted gene activity at the mouse Dlk1-Dio3 and Igf2-H19 domains. Genome Biology. 20: 272. PMID 31831055 DOI: 10.1186/S13059-019-1896-8  0.04
2021 Arnould C, Rocher V, Finoux AL, Clouaire T, Li K, Zhou F, Caron P, Mangeot PE, Ricci EP, Mourad R, Haber JE, Noordermeer D, Legube G. Loop extrusion as a mechanism for formation of DNA damage repair foci. Nature. PMID 33597753 DOI: 10.1038/s41586-021-03193-z  0.01
2020 Chang LH, Noordermeer D. Of Dots and Stripes: The Morse Code of Micro-C Reveals the Ultrastructure of Transcriptional and Architectural Mammalian 3D Genome Organization. Molecular Cell. 78: 376-378. PMID 32386540 DOI: 10.1016/J.Molcel.2020.04.021  0.01
2020 Noordermeer D. 3D genome organization: setting the stage and introducing its players. Briefings in Functional Genomics. 19: 69-70. PMID 32239212 DOI: 10.1093/Bfgp/Elaa006  0.01
2019 Chang LH, Ghosh S, Noordermeer D. TADs and their borders: free movement or building a wall? Journal of Molecular Biology. PMID 31887284 DOI: 10.1016/J.Jmb.2019.11.025  0.01
2019 Shukron O, Piras V, Noordermeer D, Holcman D. Statistics of chromatin organization during cell differentiation revealed by heterogeneous cross-linked polymers. Nature Communications. 10: 2626. PMID 31201308 DOI: 10.1038/S41467-019-10402-X  0.01
2019 Greenberg MVC, Teissandier A, Walter M, Noordermeer D, Bourc'his D. Dynamic enhancer partitioning instructs activation of a growth-related gene during exit from naïve pluripotency. Elife. 8. PMID 30990414 DOI: 10.7554/Elife.44057  0.01
2018 Sobecki M, Souaid C, Boulay J, Guerineau V, Noordermeer D, Crabbe L. MadID, a Versatile Approach to Map Protein-DNA Interactions, Highlights Telomere-Nuclear Envelope Contact Sites in Human Cells. Cell Reports. 25: 2891-2903.e5. PMID 30517874 DOI: 10.1016/J.Celrep.2018.11.027  0.01
2018 Li L, Zeng Q, Bhutkar A, Galván JA, Karamitopoulou E, Noordermeer D, Peng MW, Piersigilli A, Perren A, Zlobec I, Robinson H, Iruela-Arispe ML, Hanahan D. GKAP Acts as a Genetic Modulator of NMDAR Signaling to Govern Invasive Tumor Growth. Cancer Cell. PMID 29606348 DOI: 10.1016/J.Ccell.2018.02.011  0.01
2017 Thierion E, Le Men J, Collombet S, Hernandez C, Coulpier F, Torbey P, Thomas-Chollier M, Noordermeer D, Charnay P, Gilardi-Hebenstreit P. Krox20 hindbrain regulation incorporates multiple modes of cooperation between cis-acting elements. Plos Genetics. 13: e1006903. PMID 28749941 DOI: 10.1371/Journal.Pgen.1006903  0.01
2016 Matelot M, Noordermeer D. Determination of High-Resolution 3D Chromatin Organization Using Circular Chromosome Conformation Capture (4C-seq). Methods in Molecular Biology (Clifton, N.J.). 1480: 223-41. PMID 27659989 DOI: 10.1007/978-1-4939-6380-5_20  0.01
2008 Noordermeer D, Branco MR, Splinter E, Klous P, van IJcken W, Swagemakers S, Koutsourakis M, van der Spek P, Pombo A, de Laat W. Correction: Transcription and Chromatin Organization of a Housekeeping Gene Cluster Containing an Integrated β-Globin Locus Control Region Plos Genetics. 4. DOI: 10.1371/annotation/b4241c5d-5403-4797-8579-913ef9be560b  0.01
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