| Year |
Citation |
Score |
| 2024 |
Singh A, Del-Valle-Anton L, de Juan Romero C, Zhang Z, Ortuño EF, Mahesh A, Espinós A, Soler R, Cárdenas A, Fernández V, Lusby R, Tiwari VK, Borrell V. Gene regulatory landscape of cerebral cortex folding. Science Advances. 10: eadn1640. PMID 38838158 DOI: 10.1126/sciadv.adn1640 |
0.383 |
|
| 2024 |
Lusby R, Zhang Z, Mahesh A, Tiwari VK. Decoding gene regulatory circuitry underlying TNBC chemoresistance reveals biomarkers for therapy response and therapeutic targets. Npj Precision Oncology. 8: 64. PMID 38472332 DOI: 10.1038/s41698-024-00529-6 |
0.347 |
|
| 2023 |
Griffin A, Chen M, Tiwari VK. Dissection of cellular disruptions in autism spectrum disorder comorbidities. The European Journal of Neuroscience. e16155. PMID 37807181 DOI: 10.1111/ejn.16155 |
0.329 |
|
| 2023 |
Yadav IS, Rawat N, Chhuneja P, Kaur S, Uauy C, Lazo G, Gu YQ, Doležel J, Tiwari VK. Comparative genomic analysis of 5M chromosome of and 5U chromosome of reveal genic diversity in the tertiary gene pool. Frontiers in Plant Science. 14: 1144000. PMID 37521926 DOI: 10.3389/fpls.2023.1144000 |
0.3 |
|
| 2023 |
Singh A, Tiwari VK. Transcriptional networks of transient cell states during human prefrontal cortex development. Frontiers in Molecular Neuroscience. 16: 1126438. PMID 37138706 DOI: 10.3389/fnmol.2023.1126438 |
0.394 |
|
| 2022 |
Griffin A, Mahesh A, Tiwari VK. Disruption of the gene regulatory programme in neurodevelopmental disorders. Biochimica Et Biophysica Acta. Gene Regulatory Mechanisms. 1865: 194860. PMID 36007842 DOI: 10.1016/j.bbagrm.2022.194860 |
0.396 |
|
| 2022 |
Sahu SK, Agirre E, Inayatullah M, Mahesh A, Tiwari N, Lavin DP, Singh A, Strand S, Diken M, Luco RF, Belmonte JCI, Tiwari VK. A complex epigenome-splicing crosstalk governs epithelial-to-mesenchymal transition in metastasis and brain development. Nature Cell Biology. 24: 1265-1277. PMID 35941369 DOI: 10.1038/s41556-022-00971-3 |
0.304 |
|
| 2022 |
Singh A, Mahesh A, Noack F, Cardoso de Toledo B, Calegari F, Tiwari VK. Tcf12 and NeuroD1 cooperatively drive neuronal migration during cortical development. Development (Cambridge, England). 149. PMID 35147187 DOI: 10.1242/dev.200250 |
0.426 |
|
| 2021 |
Lavin DP, Abassi L, Inayatullah M, Tiwari VK. Mnt represses epithelial identity to promote Epithelial to Mesenchymal Transition. Molecular and Cellular Biology. MCB0018321. PMID 34460331 DOI: 10.1128/MCB.00183-21 |
0.363 |
|
| 2021 |
Herzog DP, Pascual Cuadrado D, Treccani G, Jene T, Opitz V, Hasch A, Lutz B, Lieb K, Sillaber I, van der Kooij MA, Tiwari VK, Müller MB. A distinct transcriptional signature of antidepressant response in hippocampal dentate gyrus granule cells. Translational Psychiatry. 11: 4. PMID 33414410 DOI: 10.1038/s41398-020-01136-2 |
0.321 |
|
| 2020 |
Basu A, Mestres I, Sahu SK, Tiwari N, Khongwir B, Baumgart J, Singh A, Calegari F, Tiwari VK. Phf21b imprints the spatiotemporal epigenetic switch essential for neural stem cell differentiation. Genes & Development. PMID 32820037 DOI: 10.1101/Gad.333906.119 |
0.495 |
|
| 2020 |
Lavin DP, Tiwari VK. Unresolved Complexity in the Gene Regulatory Network Underlying EMT. Frontiers in Oncology. 10: 554. PMID 32477926 DOI: 10.3389/Fonc.2020.00554 |
0.478 |
|
| 2019 |
Pataskar A, Vanderlinden W, Emmerig J, Singh A, Lipfert J, Tiwari VK. Deciphering the Gene Regulatory Landscape Encoded in DNA Biophysical Features. Iscience. 21: 638-649. PMID 31731201 DOI: 10.1016/J.Isci.2019.10.055 |
0.477 |
|
| 2019 |
Noack F, Pataskar A, Schneider M, Buchholz F, Tiwari VK, Calegari F. Assessment and site-specific manipulation of DNA (hydroxy-)methylation during mouse corticogenesis. Life Science Alliance. 2. PMID 30814272 DOI: 10.26508/lsa.201900331 |
0.417 |
|
| 2019 |
Camargo Ortega G, Falk S, Johansson PA, Peyre E, Broix L, Sahu SK, Hirst W, Schlichthaerle T, De Juan Romero C, Draganova K, Vinopal S, Chinnappa K, Gavranovic A, Karakaya T, Steininger T, ... ... Tiwari VK, et al. The centrosome protein AKNA regulates neurogenesis via microtubule organization. Nature. PMID 30787442 DOI: 10.1038/S41586-019-0962-4 |
0.379 |
|
| 2018 |
Tiwari N, Pataskar A, Péron S, Thakurela S, Sahu SK, Figueres-Oñate M, Marichal N, López-Mascaraque L, Tiwari VK, Berninger B. Stage-Specific Transcription Factors Drive Astrogliogenesis by Remodeling Gene Regulatory Landscapes. Cell Stem Cell. 23: 557-571.e8. PMID 30290178 DOI: 10.1016/J.Stem.2018.09.008 |
0.786 |
|
| 2018 |
Ramírez-González RH, Borrill P, Lang D, Harrington SA, Brinton J, Venturini L, Davey M, Jacobs J, van Ex F, Pasha A, Khedikar Y, Robinson SJ, Cory AT, Florio T, Concia L, ... ... Tiwari V, et al. The transcriptional landscape of polyploid wheat. Science (New York, N.Y.). 361. PMID 30115782 DOI: 10.1126/Science.Aar6089 |
0.325 |
|
| 2018 |
Karow M, Camp JG, Falk S, Gerber T, Pataskar A, Gac-Santel M, Kageyama J, Brazovskaja A, Garding A, Fan W, Riedemann T, Casamassa A, Smiyakin A, Schichor C, Götz M, ... Tiwari VK, et al. Direct pericyte-to-neuron reprogramming via unfolding of a neural stem cell-like program. Nature Neuroscience. PMID 29915193 DOI: 10.1038/S41593-018-0168-3 |
0.48 |
|
| 2018 |
Jeong H, Tiwari VK. Exploring the Complexity of Cortical Development Using Single-Cell Transcriptomics. Frontiers in Neuroscience. 12: 31. PMID 29456488 DOI: 10.3389/Fnins.2018.00031 |
0.395 |
|
| 2017 |
Sahu SK, Tiwari N, Pataskar A, Zhuang Y, Borisova M, Diken M, Strand S, Beli P, Tiwari VK. FBXO32 promotes microenvironment underlying epithelial-mesenchymal transition via CtBP1 during tumour metastasis and brain development. Nature Communications. 8: 1523. PMID 29142217 DOI: 10.1038/S41467-017-01366-X |
0.487 |
|
| 2017 |
Navandar M, Garding A, Sahu SK, Pataskar A, Schick S, Tiwari VK. ERK signalling modulates epigenome to drive epithelial to mesenchymal transition. Oncotarget. PMID 28418928 DOI: 10.18632/Oncotarget.16493 |
0.5 |
|
| 2016 |
Gezelius H, Moreno-Juan V, Mezzera C, Thakurela S, Rodríguez-Malmierca LM, Pistolic J, Benes V, Tiwari VK, López-Bendito G. Genetic Labeling of Nuclei-Specific Thalamocortical Neurons Reveals Putative Sensory-Modality Specific Genes. Cerebral Cortex (New York, N.Y. : 1991). PMID 27655933 DOI: 10.1093/Cercor/Bhw290 |
0.752 |
|
| 2016 |
Thakurela S, Tiwari N, Schick S, Garding A, Ivanek R, Berninger B, Tiwari VK. Mapping gene regulatory circuitry of Pax6 during neurogenesis. Cell Discovery. 2: 15045. PMID 27462442 DOI: 10.1038/Celldisc.2015.45 |
0.792 |
|
| 2016 |
Thakurela S, Garding A, Jung RB, Müller C, Goebbels S, White R, Werner HB, Tiwari VK. The transcriptome of mouse central nervous system myelin. Scientific Reports. 6: 25828. PMID 27173133 DOI: 10.1038/Srep25828 |
0.701 |
|
| 2016 |
Sahu SK, Fritz A, Tiwari N, Kovacs Z, Pouya A, Wüllner V, Bora P, Schacht T, Baumgart J, Peron S, Berninger B, Tiwari VK, Methner A. TOX3 plays a role in neuronal progenitor proliferation. Biochimica Et Biophysica Acta. PMID 27080130 DOI: 10.1016/J.Bbagrm.2016.04.005 |
0.448 |
|
| 2016 |
Stanzel S, Stubbusch J, Pataskar A, Howard MJ, Deller T, Ernsberger U, Tiwari VK, Rohrer H, Tsarovina K. Distinct roles of Hand2 in developing and adult autonomic neurons. Developmental Neurobiology. PMID 26818017 DOI: 10.1002/Dneu.22378 |
0.458 |
|
| 2016 |
Wagner M, Jung J, Koslowski M, Türeci Ö, Tiwari VK, Sahin U. Chromatin Immunoprecipitation Assay to Identify Genomic Binding Sites of Regulatory Factors. Methods in Molecular Biology (Clifton, N.J.). 1366: 53-65. PMID 26585127 DOI: 10.1007/978-1-4939-3127-9_6 |
0.499 |
|
| 2016 |
Karow M, Camp JG, Pataskar A, Schichor C, Tiwari VK, Treutlein B, Berninger B. Unravelling the molecular synergism of adult human brain pericyte reprogramming into induced GABAergic neurons by Sox2 and Ascl1 Human Gene Therapy. DOI: 10.1089/Hum.2016.29036.Abstracts |
0.316 |
|
| 2016 |
Pataskar A, Jung J, Tiwari VK. Deciphering the Epigenetic Code of Embryonic Neurogenesis Reviews in Cell Biology and Molecular Medicine. 2: 168-207. DOI: 10.1002/3527600906.Mcb.201600012 |
0.501 |
|
| 2015 |
Schick S, Becker K, Thakurela S, Fournier D, Hampel MH, Legewie S, Tiwari VK. Identifying Novel Circadian Expressed Transcriptional Regulators. Molecular and Cellular Biology. PMID 26644408 DOI: 10.1128/Mcb.00701-15 |
0.772 |
|
| 2015 |
Prakash K, Fournier D, Redl S, Best G, Borsos M, Tiwari VK, Tachibana-Konwalski K, Ketting RF, Parekh SH, Cremer C, Birk UJ. Superresolution imaging reveals structurally distinct periodic patterns of chromatin along pachytene chromosomes. Proceedings of the National Academy of Sciences of the United States of America. PMID 26561583 DOI: 10.1073/Pnas.1516928112 |
0.367 |
|
| 2015 |
Pataskar A, Jung J, Smialowski P, Noack F, Calegari F, Straub T, Tiwari VK. NeuroD1 reprograms chromatin and transcription factor landscapes to induce the neuronal program. The Embo Journal. PMID 26516211 DOI: 10.15252/Embj.201591206 |
0.576 |
|
| 2015 |
Schick S, Fournier D, Thakurela S, Sahu SK, Garding A, Tiwari VK. Dynamics of chromatin accessibility and epigenetic state in response to UV damage. Journal of Cell Science. PMID 26446258 DOI: 10.1242/Jcs.173633 |
0.754 |
|
| 2015 |
Thakurela S, Sahu SK, Garding A, Tiwari VK. Dynamics and function of distal regulatory elements during neurogenesis and neuroplasticity. Genome Research. 25: 1309-24. PMID 26170447 DOI: 10.1101/Gr.190926.115 |
0.793 |
|
| 2015 |
Sahu SK, Garding A, Tiwari N, Thakurela S, Toedling J, Gebhard S, Ortega F, Schmarowski N, Berninger B, Nitsch R, Schmidt M, Tiwari VK. JNK-dependent gene regulatory circuitry governs mesenchymal fate. The Embo Journal. 34: 2162-81. PMID 26157010 DOI: 10.15252/Embj.201490693 |
0.784 |
|
| 2015 |
von der Lippen C, Sahu S, Seifermann M, Tiwari VK, Epe B. The repair of oxidized purines in the DNA of human lymphocytes requires an activation involving NF-YA-mediated upregulation of OGG1. Dna Repair. 25: 1-8. PMID 25463392 DOI: 10.1016/J.Dnarep.2014.10.008 |
0.395 |
|
| 2014 |
Fox SE, Geniza M, Hanumappa M, Naithani S, Sullivan C, Preece J, Tiwari VK, Elser J, Leonard JM, Sage A, Gresham C, Kerhornou A, Bolser D, McCarthy F, Kersey P, et al. De novo transcriptome assembly and analyses of gene expression during photomorphogenesis in diploid wheat Triticum monococcum. Plos One. 9: e96855. PMID 24821410 DOI: 10.1371/Journal.Pone.0096855 |
0.315 |
|
| 2013 |
Thakurela S, Garding A, Jung J, Schübeler D, Burger L, Tiwari VK. Gene regulation and priming by topoisomerase IIα in embryonic stem cells. Nature Communications. 4: 2478. PMID 24072229 DOI: 10.1038/Ncomms3478 |
0.782 |
|
| 2013 |
Tiwari N, Tiwari VK, Waldmeier L, Balwierz PJ, Arnold P, Pachkov M, Meyer-Schaller N, Schübeler D, van Nimwegen E, Christofori G. Sox4 is a master regulator of epithelial-mesenchymal transition by controlling Ezh2 expression and epigenetic reprogramming. Cancer Cell. 23: 768-83. PMID 23764001 DOI: 10.1016/J.Ccr.2013.04.020 |
0.5 |
|
| 2013 |
Garding A, Bhattacharya N, Claus R, Ruppel M, Tschuch C, Filarsky K, Idler I, Zucknick M, Caudron-Herger M, Oakes C, Fleig V, Keklikoglou I, Allegra D, Serra L, Thakurela S, ... Tiwari V, et al. Epigenetic upregulation of lncRNAs at 13q14.3 in leukemia is linked to the In Cis downregulation of a gene cluster that targets NF-kB. Plos Genetics. 9: e1003373. PMID 23593011 DOI: 10.1371/Journal.Pgen.1003373 |
0.76 |
|
| 2012 |
Tiwari VK, Burger L, Nikoletopoulou V, Deogracias R, Thakurela S, Wirbelauer C, Kaut J, Terranova R, Hoerner L, Mielke C, Boege F, Murr R, Peters AH, Barde YA, Schübeler D. Target genes of Topoisomerase IIβ regulate neuronal survival and are defined by their chromatin state. Proceedings of the National Academy of Sciences of the United States of America. 109: E934-43. PMID 22474351 DOI: 10.1073/Pnas.1119798109 |
0.778 |
|
| 2012 |
Tiwari VK, Stadler MB, Wirbelauer C, Paro R, Schübeler D, Beisel C. A chromatin-modifying function of JNK during stem cell differentiation. Nature Genetics. 44: 94-100. PMID 22179133 DOI: 10.1038/Ng.1036 |
0.489 |
|
| 2011 |
Stadler MB, Murr R, Burger L, Ivanek R, Lienert F, Schöler A, van Nimwegen E, Wirbelauer C, Oakeley EJ, Gaidatzis D, Tiwari VK, Schübeler D. DNA-binding factors shape the mouse methylome at distal regulatory regions. Nature. 480: 490-5. PMID 22170606 DOI: 10.1038/Nature10716 |
0.464 |
|
| 2011 |
Bell O, Tiwari VK, Thomä NH, Schübeler D. Determinants and dynamics of genome accessibility. Nature Reviews. Genetics. 12: 554-64. PMID 21747402 DOI: 10.1038/Nrg3017 |
0.388 |
|
| 2011 |
Lienert F, Mohn F, Tiwari VK, Baubec T, Roloff TC, Gaidatzis D, Stadler MB, Schübeler D. Genomic prevalence of heterochromatic H3K9me2 and transcription do not discriminate pluripotent from terminally differentiated cells. Plos Genetics. 7: e1002090. PMID 21655081 DOI: 10.1371/Journal.Pgen.1002090 |
0.526 |
|
| 2010 |
Licchesi JD, Van Neste L, Tiwari VK, Cope L, Lin X, Baylin SB, Herman JG. Transcriptional regulation of Wnt inhibitory factor-1 by Miz-1/c-Myc. Oncogene. 29: 5923-34. PMID 20697356 DOI: 10.1038/Onc.2010.322 |
0.443 |
|
| 2010 |
Tiwari VK, Baylin SB. Mapping networks of protein-mediated physical interactions between chromatin elements. Current Protocols in Molecular Biology / Edited by Frederick M. Ausubel ... [Et Al.]. Unit 21.16.1-13. PMID 20069537 DOI: 10.1002/0471142727.Mb2116S89 |
0.369 |
|
| 2009 |
Tiwari VK, Baylin SB. Combined 3C-ChIP-cloning (6C) assay: a tool to unravel protein-mediated genome architecture. Cold Spring Harbor Protocols. 2009: pdb.prot5168. PMID 20147103 DOI: 10.1101/Pdb.Prot5168 |
0.373 |
|
| 2009 |
Sandhu KS, Shi C, Sjölinder M, Zhao Z, Göndör A, Liu L, Tiwari VK, Guibert S, Emilsson L, Imreh MP, Ohlsson R. Nonallelic transvection of multiple imprinted loci is organized by the H19 imprinting control region during germline development. Genes & Development. 23: 2598-603. PMID 19933149 DOI: 10.1101/Gad.552109 |
0.381 |
|
| 2009 |
Tiwari VK, Baylin SB. Breaching the boundaries that safeguard against repression. Molecular Cell. 34: 395-7. PMID 19481516 DOI: 10.1016/J.Molcel.2009.05.007 |
0.426 |
|
| 2008 |
Tiwari VK, McGarvey KM, Licchesi JD, Ohm JE, Herman JG, Schübeler D, Baylin SB. PcG proteins, DNA methylation, and gene repression by chromatin looping. Plos Biology. 6: 2911-27. PMID 19053175 DOI: 10.1371/Journal.Pbio.0060306 |
0.502 |
|
| 2008 |
Tiwari VK, Cope L, McGarvey KM, Ohm JE, Baylin SB. A novel 6C assay uncovers Polycomb-mediated higher order chromatin conformations. Genome Research. 18: 1171-9. PMID 18502945 DOI: 10.1101/Gr.073452.107 |
0.428 |
|
| 2008 |
Németh A, Guibert S, Tiwari VK, Ohlsson R, Längst G. Epigenetic regulation of TTF-I-mediated promoter-terminator interactions of rRNA genes. The Embo Journal. 27: 1255-1265. PMID 18354495 DOI: 10.1038/Emboj.2008.57 |
0.527 |
|
| 2006 |
Zhao Z, Tavoosidana G, Sjölinder M, Göndör A, Mariano P, Wang S, Kanduri C, Lezcano M, Sandhu KS, Singh U, Pant V, Tiwari V, Kurukuti S, Ohlsson R. Circular chromosome conformation capture (4C) uncovers extensive networks of epigenetically regulated intra- and interchromosomal interactions. Nature Genetics. 38: 1341-7. PMID 17033624 DOI: 10.1038/Ng1891 |
0.398 |
|
| 2006 |
Kurukuti S, Tiwari VK, Tavoosidana G, Pugacheva E, Murrell A, Zhao Z, Lobanenkov V, Reik W, Ohlsson R. CTCF binding at the H19 imprinting control region mediates maternally inherited higher-order chromatin conformation to restrict enhancer access to Igf2 Proceedings of the National Academy of Sciences of the United States of America. 103: 10684-10689. PMID 16815976 DOI: 10.1073/Pnas.0600326103 |
0.384 |
|
| 2005 |
Burke LJ, Zhang R, Bartkuhn M, Tiwari VK, Tavoosidana G, Kurukuti S, Weth C, Leers J, Galjart N, Ohlsson R, Renkawitz R. CTCF binding and higher order chromatin structure of the H19 locus are maintained in mitotic chromatin. The Embo Journal. 24: 3291-300. PMID 16107875 DOI: 10.1038/Sj.Emboj.7600793 |
0.442 |
|
| 2005 |
Pugacheva EM, Tiwari VK, Abdullaev Z, Vostrov AA, Flanagan PT, Quitschke WW, Loukinov DI, Ohlsson R, Lobanenkov VV. Familial cases of point mutations in the XIST promoter reveal a correlation between CTCF binding and pre-emptive choices of X chromosome inactivation Human Molecular Genetics. 14: 953-965. PMID 15731119 DOI: 10.1093/Hmg/Ddi089 |
0.331 |
|
| 2004 |
Thakur N, Tiwari VK, Thomassin H, Pandey RR, Kanduri M, Göndör A, Grange T, Ohlsson R, Kanduri C. An Antisense RNA Regulates the Bidirectional Silencing Property of the Kcnq1 Imprinting Control Region Molecular and Cellular Biology. 24: 7855-7862. PMID 15340049 DOI: 10.1128/Mcb.24.18.7855-7862.2004 |
0.413 |
|
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