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Matthew A Conte - Publications

Affiliations: 
2018 Biology University of Maryland, College Park, College Park, MD 
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32 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Kocher TD, Behrens KA, Conte MA, Aibara M, Mrosso HDJ, Green ECJ, Kidd MR, Nikaido M, Koblmüller S. New Sex Chromosomes in Lake Victoria Cichlid Fishes (Cichlidae: Haplochromini). Genes. 13. PMID 35627189 DOI: 10.3390/genes13050804  0.722
2021 Pollett S, Conte MA, Sanborn M, Jarman RG, Lidl GM, Modjarrad K, Maljkovic Berry I. A comparative recombination analysis of human coronaviruses and implications for the SARS-CoV-2 pandemic. Scientific Reports. 11: 17365. PMID 34462471 DOI: 10.1038/s41598-021-96626-8  0.311
2020 Conte MA, Clark FE, Roberts RB, Xu L, Tao W, Zhou Q, Wang D, Kocher TD. Origin of a giant sex chromosome. Molecular Biology and Evolution. PMID 33300980 DOI: 10.1093/molbev/msaa319  0.779
2020 Tao W, Conte MA, Wang D, Kocher TD. Network architecture and sex chromosome turnovers: Do epistatic interactions shape patterns of sex chromosome replacement? Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. e2000161. PMID 33283342 DOI: 10.1002/bies.202000161  0.564
2020 Carleton KL, Conte MA, Malinsky M, Nandamuri SP, Sandkam BA, Meier JI, Mwaiko S, Seehausen O, Kocher TD. Movement of transposable elements contributes to cichlid diversity. Molecular Ecology. PMID 33049090 DOI: 10.1111/mec.15685  0.562
2020 Triay C, Conte MA, Baroiller JF, Bezault E, Clark FE, Penman DJ, Kocher TD, D'Cotta H. Structure and Sequence of the Sex Determining Locus in Two Wild Populations of Nile Tilapia. Genes. 11. PMID 32872430 DOI: 10.3390/Genes11091017  0.628
2020 Sandkam BA, Campello L, O'Brien C, Nandamuri SP, Gammerdinger W, Conte M, Swaroop A, Carleton KL. Tbx2a modulates switching of RH2 and LWS opsin gene expression. Molecular Biology and Evolution. PMID 32191319 DOI: 10.1093/Molbev/Msaa062  0.784
2019 Yourick MR, Sandkam BA, Gammerdinger WJ, Escobar-Camacho D, Nandamuri SP, Clark FE, Joyce B, Conte MA, Kocher TD, Carleton KL. Diurnal variation in opsin expression and common housekeeping genes necessitates comprehensive normalization methods for quantitative real-time PCR analyses. Molecular Ecology Resources. PMID 31325910 DOI: 10.1111/1755-0998.13062  0.746
2019 Conte MA, Joshi R, Moore EC, Nandamuri SP, Gammerdinger WJ, Roberts RB, Carleton KL, Lien S, Kocher TD. Chromosome-scale assemblies reveal the structural evolution of African cichlid genomes. Gigascience. 8. PMID 30942871 DOI: 10.1093/Gigascience/Giz030  0.783
2018 Gammerdinger WJ, Conte MA, Sandkam BA, Penman DJ, Kocher TD. Characterization of sex chromosomes in three deeply diverged species of Pseudocrenilabrinae (Teleostei: Cichlidae). Hydrobiologia. 832: 397-408. PMID 35665074 DOI: 10.1007/s10750-018-3778-6  0.821
2018 Nandamuri SP, Conte MA, Carleton KL. Multiple trans QTL and one cis-regulatory deletion are associated with the differential expression of cone opsins in African cichlids. Bmc Genomics. 19: 945. PMID 30563463 DOI: 10.1186/S12864-018-5328-Z  0.409
2018 Clark FE, Conte MA, Kocher TD. Genomic Characterization of a B Chromosome in Lake Malawi Cichlid Fishes. Genes. 9. PMID 30563180 DOI: 10.3390/Genes9120610  0.627
2018 York RA, Patil C, Abdilleh K, Johnson ZV, Conte MA, Genner MJ, McGrath PT, Fraser HB, Fernald RD, Streelman JT. Behavior-dependent regulation reveals genes and pathways associated with bower building in cichlid fishes. Proceedings of the National Academy of Sciences of the United States of America. PMID 30397142 DOI: 10.1073/Pnas.1810140115  0.705
2018 Tao W, Chen J, Tan D, Yang J, Sun L, Wei J, Conte MA, Kocher TD, Wang D. Transcriptome display during tilapia sex determination and differentiation as revealed by RNA-Seq analysis. Bmc Genomics. 19: 363. PMID 29764377 DOI: 10.1186/S12864-018-4756-0  0.582
2018 Gammerdinger WJ, Conte MA, Sandkam BA, Ziegelbecker A, Koblmüller S, Kocher TD. Novel sex chromosomes in three cichlid fishes from Lake Tanganyika. The Journal of Heredity. PMID 29444291 DOI: 10.1093/Jhered/Esy003  0.814
2018 Gammerdinger WJ, Conte MA, Sandkam BA, Penman DJ, Kocher TD. Characterization of sex chromosomes in three deeply diverged species of Pseudocrenilabrinae (Teleostei: Cichlidae) Hydrobiologia. 832: 397-408. DOI: 10.1007/S10750-018-3778-6  0.818
2017 Conte MA, Gammerdinger WJ, Bartie KL, Penman DJ, Kocher TD. A high quality assembly of the Nile Tilapia (Oreochromis niloticus) genome reveals the structure of two sex determination regions. Bmc Genomics. 18: 341. PMID 28464822 DOI: 10.1186/S12864-017-3723-5  0.811
2016 Gammerdinger WJ, Conte MA, Baroiller JF, D'Cotta H, Kocher TD. Comparative analysis of a sex chromosome from the blackchin tilapia, Sarotherodon melanotheron. Bmc Genomics. 17: 808. PMID 27756226 DOI: 10.1186/S12864-016-3163-7  0.823
2016 Clark FE, Conte MA, Ferreira-Bravo IA, Poletto AB, Martins C, Kocher TD. Dynamic Sequence Evolution of a Sex-Associated B Chromosome in Lake Malawi Cichlid Fish. The Journal of Heredity. PMID 27630131 DOI: 10.1093/Jhered/Esw059  0.616
2016 Tao W, Sun L, Shi H, Cheng Y, Jiang D, Fu B, Conte MA, Gammerdinger WJ, Kocher TD, Wang D. Integrated analysis of miRNA and mRNA expression profiles in tilapia gonads at an early stage of sex differentiation. Bmc Genomics. 17: 328. PMID 27142172 DOI: 10.1186/S12864-016-2636-Z  0.743
2015 Conte MA, Kocher TD. An improved genome reference for the African cichlid, Metriaclima zebra. Bmc Genomics. 16: 724. PMID 26394688 DOI: 10.1186/S12864-015-1930-5  0.591
2014 Gammerdinger WJ, Conte MA, Acquah EA, Roberts RB, Kocher TD. Structure and decay of a proto-Y region in Tilapia, Oreochromis niloticus. Bmc Genomics. 15: 975. PMID 25404257 DOI: 10.1186/1471-2164-15-975  0.791
2014 Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, ... ... Conte MA, et al. The genomic substrate for adaptive radiation in African cichlid fish. Nature. 513: 375-81. PMID 25186727 DOI: 10.1038/Nature13726  0.755
2014 Schulte JE, O'Brien CS, Conte MA, O'Quin KE, Carleton KL. Interspecific variation in Rx1 expression controls opsin expression and causes visual system diversity in African cichlid fishes. Molecular Biology and Evolution. 31: 2297-308. PMID 24859246 DOI: 10.1093/Molbev/Msu172  0.447
2014 Valente GT, Conte MA, Fantinatti BE, Cabral-de-Mello DC, Carvalho RF, Vicari MR, Kocher TD, Martins C. Origin and evolution of B chromosomes in the cichlid fish Astatotilapia latifasciata based on integrated genomic analyses. Molecular Biology and Evolution. 31: 2061-72. PMID 24770715 DOI: 10.1093/Molbev/Msu148  0.627
2013 O'Quin CT, Drilea AC, Conte MA, Kocher TD. Mapping of pigmentation QTL on an anchored genome assembly of the cichlid fish, Metriaclima zebra. Bmc Genomics. 14: 287. PMID 23622422 DOI: 10.1186/1471-2164-14-287  0.762
2012 O'Quin KE, Schulte JE, Patel Z, Kahn N, Naseer Z, Wang H, Conte MA, Carleton KL. Evolution of cichlid vision via trans-regulatory divergence. Bmc Evolutionary Biology. 12: 251. PMID 23267665 DOI: 10.1186/1471-2148-12-251  0.381
2012 Nyberg KG, Conte MA, Kostyun JL, Forde A, Bely AE. Transcriptome characterization via 454 pyrosequencing of the annelid Pristina leidyi, an emerging model for studying the evolution of regeneration Bmc Genomics. 13. PMID 22747785 DOI: 10.1186/1471-2164-13-287  0.384
2012 Guyon R, Rakotomanga M, Azzouzi N, Coutanceau JP, Bonillo C, D'Cotta H, Pepey E, Soler L, Rodier-Goud M, D'Hont A, Conte MA, van Bers NE, Penman DJ, Hitte C, Crooijmans RP, et al. A high-resolution map of the Nile tilapia genome: a resource for studying cichlids and other percomorphs. Bmc Genomics. 13: 222. PMID 22672252 DOI: 10.1186/1471-2164-13-222  0.667
2011 Fujimura K, Conte MA, Kocher TD. Circular DNA intermediate in the duplication of Nile tilapia vasa genes. Plos One. 6: e29477. PMID 22216289 DOI: 10.1371/Journal.Pone.0029477  0.787
2010 Soler L, Conte MA, Katagiri T, Howe AE, Lee BY, Amemiya C, Stuart A, Dossat C, Poulain J, Johnson J, Di Palma F, Lindblad-Toh K, Baroiller JF, D'Cotta H, Ozouf-Costaz C, et al. Comparative physical maps derived from BAC end sequences of tilapia (Oreochromis niloticus). Bmc Genomics. 11: 636. PMID 21080946 DOI: 10.1186/1471-2164-11-636  0.799
2010 Lee BY, Howe AE, Conte MA, D'Cotta H, Pepey E, Baroiller JF, di Palma F, Carleton KL, Kocher TD. An EST resource for tilapia based on 17 normalized libraries and assembly of 116,899 sequence tags. Bmc Genomics. 11: 278. PMID 20433739 DOI: 10.1186/1471-2164-11-278  0.774
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