| Year |
Citation |
Score |
| 2023 |
Aleksander SA, Balhoff J, Carbon S, Cherry JM, Drabkin HJ, Ebert D, Feuermann M, Gaudet P, Harris NL, Hill DP, Lee R, Mi H, Moxon S, Mungall CJ, Muruganugan A, ... ... Zorn A, et al. The Gene Ontology knowledgebase in 2023. Genetics. 224. PMID 36866529 DOI: 10.1093/genetics/iyad031 |
0.323 |
|
| 2023 |
Fisher M, James-Zorn C, Ponferrada V, Bell AJ, Sundararaj N, Segerdell E, Chaturvedi P, Bayyari N, Chu S, Pells T, Lotay V, Agalakov S, Wang DZ, Arshinoff BI, Foley S, ... ... Zorn AM, et al. Xenbase: Key Features and Resources of the Xenopus Model Organism Knowledgebase. Genetics. PMID 36755307 DOI: 10.1093/genetics/iyad018 |
0.674 |
|
| 2022 |
Ramachandran J, Zhou W, Bardenhagen AE, Nasr T, Yates ER, Zorn AM, Ji H, Vokes SA. Hedgehog regulation of epithelial cell state and morphogenesis in the larynx. Elife. 11. PMID 36398878 DOI: 10.7554/eLife.77055 |
0.637 |
|
| 2022 |
Rankin SA, Zorn AM. The homeodomain transcription factor Ventx2 regulates respiratory progenitor cell number and differentiation timing during Xenopus lung development. Development, Growth & Differentiation. PMID 36053777 DOI: 10.1111/dgd.12807 |
0.303 |
|
| 2022 |
Zahn N, James-Zorn C, Ponferrada VG, Adams DS, Grzymkowski J, Buchholz DR, Nascone-Yoder NM, Horb M, Moody SA, Vize PD, Zorn AM. Normal Table of Xenopus development: a new graphical resource. Development (Cambridge, England). 149. PMID 35833709 DOI: 10.1242/dev.200356 |
0.65 |
|
| 2022 |
Fisher ME, Segerdell E, Matentzoglu N, Nenni MJ, Fortriede JD, Chu S, Pells TJ, Osumi-Sutherland D, Chaturvedi P, James-Zorn C, Sundararaj N, Lotay VS, Ponferrada V, Wang DZ, Kim E, ... ... Zorn AM, et al. The Xenopus phenotype ontology: bridging model organism phenotype data to human health and development. Bmc Bioinformatics. 23: 99. PMID 35317743 DOI: 10.1186/s12859-022-04636-8 |
0.604 |
|
| 2022 |
Jansen C, Paraiso KD, Zhou JJ, Blitz IL, Fish MB, Charney RM, Cho JS, Yasuoka Y, Sudou N, Bright AR, Wlizla M, Veenstra GJC, Taira M, Zorn AM, Mortazavi A, et al. Uncovering the mesendoderm gene regulatory network through multi-omic data integration. Cell Reports. 38: 110364. PMID 35172134 DOI: 10.1016/j.celrep.2022.110364 |
0.345 |
|
| 2021 |
Edwards NA, Zorn AM. Modeling endoderm development and disease in Xenopus. Current Topics in Developmental Biology. 145: 61-90. PMID 34074536 DOI: 10.1016/bs.ctdb.2021.01.001 |
0.319 |
|
| 2019 |
Fortriede JD, Pells TJ, Chu S, Chaturvedi P, Wang D, Fisher ME, James-Zorn C, Wang Y, Nenni MJ, Burns KA, Lotay VS, Ponferrada VG, Karimi K, Zorn AM, Vize PD. Xenbase: deep integration of GEO & SRA RNA-seq and ChIP-seq data in a model organism database. Nucleic Acids Research. PMID 31733057 DOI: 10.1093/nar/gkz933 |
0.671 |
|
| 2019 |
Nenni MJ, Fisher ME, James-Zorn C, Pells TJ, Ponferrada V, Chu S, Fortriede JD, Burns KA, Wang Y, Lotay VS, Wang DZ, Segerdell E, Chaturvedi P, Karimi K, Vize PD, ... Zorn AM, et al. Xenbase: Facilitating the Use of to Model Human Disease. Frontiers in Physiology. 10: 154. PMID 30863320 DOI: 10.3389/fphys.2019.00154 |
0.598 |
|
| 2018 |
James-Zorn C, Ponferrada V, Fisher ME, Burns K, Fortriede J, Segerdell E, Karimi K, Lotay V, Wang DZ, Chu S, Pells T, Wang Y, Vize PD, Zorn A. Navigating Xenbase: An Integrated Xenopus Genomics and Gene Expression Database. Methods in Molecular Biology (Clifton, N.J.). 1757: 251-305. PMID 29761462 DOI: 10.1007/978-1-4939-7737-6_10 |
0.694 |
|
| 2017 |
Karimi K, Fortriede JD, Lotay VS, Burns KA, Wang DZ, Fisher ME, Pells TJ, James-Zorn C, Wang Y, Ponferrada VG, Chu S, Chaturvedi P, Zorn AM, Vize PD. Xenbase: a genomic, epigenomic and transcriptomic model organism database. Nucleic Acids Research. PMID 29059324 DOI: 10.1093/nar/gkx936 |
0.636 |
|
| 2016 |
Session AM, Uno Y, Kwon T, Chapman JA, Toyoda A, Takahashi S, Fukui A, Hikosaka A, Suzuki A, Kondo M, van Heeringen SJ, Quigley I, Heinz S, Ogino H, Ochi H, ... ... Zorn AM, et al. Genome evolution in the allotetraploid frog Xenopus laevis. Nature. 538: 336-343. PMID 27762356 DOI: 10.1038/Nature19840 |
0.633 |
|
| 2016 |
Vize PD, Zorn AM. Xenopus genomic data and browser resources. Developmental Biology. PMID 27039265 DOI: 10.1016/j.ydbio.2016.03.030 |
0.622 |
|
| 2015 |
Grant IM, Balcha D, Hao T, Shen Y, Trivedi P, Patrushev I, Fortriede JD, Karpinka JB, Liu L, Zorn AM, Todd Stukenberg P, Hill DE, Gilchrist MJ. The Xenopus Orfeome: a resource that enables functional genomics. Developmental Biology. PMID 26391338 DOI: 10.1016/j.ydbio.2015.09.004 |
0.388 |
|
| 2015 |
James-Zorn C, Ponferrada VG, Burns KA, Fortriede JD, Lotay VS, Liu Y, Karpinka JB, Karimi K, Zorn AM, Vize PD. Xenbase; core features, data acquisition and data processing. Genesis (New York, N.Y. : 2000). PMID 26150211 DOI: 10.1002/dvg.22873 |
0.648 |
|
| 2015 |
Deans AR, Lewis SE, Huala E, Anzaldo SS, Ashburner M, Balhoff JP, Blackburn DC, Blake JA, Burleigh JG, Chanet B, Cooper LD, Courtot M, Csösz S, Cui H, Dahdul W, ... ... Zorn AM, et al. Finding our way through phenotypes. Plos Biology. 13: e1002033. PMID 25562316 DOI: 10.1371/Journal.Pbio.1002033 |
0.615 |
|
| 2015 |
Karpinka JB, Fortriede JD, Burns KA, James-Zorn C, Ponferrada VG, Lee J, Karimi K, Zorn AM, Vize PD. Xenbase, the Xenopus model organism database; new virtualized system, data types and genomes. Nucleic Acids Research. 43: D756-63. PMID 25313157 DOI: 10.1093/nar/gku956 |
0.631 |
|
| 2013 |
Segerdell E, Ponferrada VG, James-Zorn C, Burns KA, Fortriede JD, Dahdul WM, Vize PD, Zorn AM. Enhanced XAO: the ontology of Xenopus anatomy and development underpins more accurate annotation of gene expression and queries on Xenbase. Journal of Biomedical Semantics. 4: 31. PMID 24139024 DOI: 10.1186/2041-1480-4-31 |
0.652 |
|
| 2013 |
Bowes JB, Snyder KA, James-Zorn C, Ponferrada VG, Jarabek CJ, Burns KA, Bhattacharyya B, Zorn AM, Vize PD. The Xenbase literature curation process. Database : the Journal of Biological Databases and Curation. 2013: bas046. PMID 23303299 DOI: 10.1093/database/bas046 |
0.613 |
|
| 2013 |
James-Zorn C, Ponferrada VG, Jarabek CJ, Burns KA, Segerdell EJ, Lee J, Snyder K, Bhattacharyya B, Karpinka JB, Fortriede J, Bowes JB, Zorn AM, Vize PD. Xenbase: expansion and updates of the Xenopus model organism database. Nucleic Acids Research. 41: D865-70. PMID 23125366 DOI: 10.1093/nar/gks1025 |
0.686 |
|
| 2011 |
Shifley ET, Zorn A. Prolonged FGF signaling is necessary for foregut organ induction in Xenopus Developmental Biology. 356: 236-237. DOI: 10.1016/J.Ydbio.2011.05.409 |
0.302 |
|
| 2010 |
Hellsten U, Harland RM, Gilchrist MJ, Hendrix D, Jurka J, Kapitonov V, Ovcharenko I, Putnam NH, Shu S, Taher L, Blitz IL, Blumberg B, Dichmann DS, Dubchak I, Amaya E, ... ... Zorn AM, et al. The genome of the Western clawed frog Xenopus tropicalis. Science (New York, N.Y.). 328: 633-6. PMID 20431018 DOI: 10.1126/Science.1183670 |
0.634 |
|
| 2010 |
Bowes JB, Snyder KA, Segerdell E, Jarabek CJ, Azam K, Zorn AM, Vize PD. Xenbase: gene expression and improved integration. Nucleic Acids Research. 38: D607-12. PMID 19884130 DOI: 10.1093/nar/gkp953 |
0.648 |
|
| 2008 |
Li Y, Rankin SA, Sinner D, Kenny AP, Krieg PA, Zorn AM. Sfrp5 coordinates foregut specification and morphogenesis by antagonizing both canonical and noncanonical Wnt11 signaling. Genes & Development. 22: 3050-63. PMID 18981481 DOI: 10.1101/Gad.1687308 |
0.59 |
|
| 2008 |
Woodland HR, Zorn AM. The core endodermal gene network of vertebrates: combining developmental precision with evolutionary flexibility. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 30: 757-65. PMID 18623060 DOI: 10.1002/Bies.20785 |
0.617 |
|
| 2008 |
Kirilenko P, Weierud FK, Zorn AM, Woodland HR. The efficiency of Xenopus primordial germ cell migration depends on the germplasm mRNA encoding the PDZ domain protein Grip2. Differentiation; Research in Biological Diversity. 76: 392-403. PMID 17924960 DOI: 10.1111/J.1432-0436.2007.00229.X |
0.644 |
|
| 2006 |
Sinner D, Kirilenko P, Rankin S, Wei E, Howard L, Kofron M, Heasman J, Woodland HR, Zorn AM. Global analysis of the transcriptional network controlling Xenopus endoderm formation. Development (Cambridge, England). 133: 1955-66. PMID 16651540 DOI: 10.1242/Dev.02358 |
0.665 |
|
| 2005 |
Tao Q, Lloyd B, Lang S, Houston D, Zorn A, Wylie C. A novel G protein-coupled receptor, related to GPR4, is required for assembly of the cortical actin skeleton in early Xenopus embryos. Development. 132: 2825-2836. PMID 15930112 DOI: 10.1242/Dev.01866 |
0.338 |
|
| 2004 |
Gilchrist MJ, Zorn AM, Voigt J, Smith JC, Papalopulu N, Amaya E. Defining a large set of full-length clones from a Xenopus tropicalis EST project. Developmental Biology. 271: 498-516. PMID 15223350 DOI: 10.1016/J.Ydbio.2004.04.023 |
0.348 |
|
| 2003 |
Costa RM, Mason J, Lee M, Amaya E, Zorn AM. Novel gene expression domains reveal early patterning of the Xenopus endoderm. Gene Expression Patterns : Gep. 3: 509-19. PMID 12915320 DOI: 10.1016/s1567-133x(03)00086-3 |
0.303 |
|
| 2003 |
D'Souza A, Lee M, Taverner N, Mason J, Carruthers S, Smith JC, Amaya E, Papalopulu N, Zorn AM. Molecular components of the endoderm specification pathway in Xenopus tropicalis. Developmental Dynamics : An Official Publication of the American Association of Anatomists. 226: 118-27. PMID 12508233 DOI: 10.1002/Dvdy.10201 |
0.333 |
|
| 2002 |
Standley HJ, Zorn AM, Gurdon JB. A dynamic requirement for community interactions during Xenopus myogenesis. The International Journal of Developmental Biology. 46: 279-83. PMID 12068948 DOI: 10.1387/Ijdb.12068948 |
0.437 |
|
| 2001 |
Shimizu K, Bourillot PY, Nielsen SJ, Zorn AM, Gurdon JB. Swift is a novel BRCT domain coactivator of Smad2 in transforming growth factor beta signaling. Molecular and Cellular Biology. 21: 3901-12. PMID 11359898 DOI: 10.1128/Mcb.21.12.3901-3912.2001 |
0.5 |
|
| 2001 |
Butler K, Zorn AM, Gurdon JB. Nonradioactive in situ hybridization to xenopus tissue sections. Methods (San Diego, Calif.). 23: 303-12. PMID 11316431 DOI: 10.1006/Meth.2000.1142 |
0.468 |
|
| 1999 |
Stennard F, Zorn AM, Ryan K, Garrett N, Gurdon JB. Differential expression of VegT and Antipodean protein isoforms in Xenopus. Mechanisms of Development. 86: 87-98. PMID 10446268 DOI: 10.1016/S0925-4773(99)00119-7 |
0.513 |
|
| 1999 |
Zorn AM, Butler K, Gurdon JB. Anterior endomesoderm specification in Xenopus by Wnt/beta-catenin and TGF-beta signalling pathways. Developmental Biology. 209: 282-97. PMID 10328921 DOI: 10.1006/Dbio.1999.9257 |
0.458 |
|
| 1997 |
Gurdon JB, Ryan K, Stennard F, McDowell N, Zorn AM, Crease DJ, Dyson S. Cell response to different concentrations of a morphogen: activin effects on Xenopus animal caps. Cold Spring Harbor Symposia On Quantitative Biology. 62: 151-8. PMID 9598347 DOI: 10.1101/Sqb.1997.062.01.020 |
0.4 |
|
| 1997 |
Zorn AM, Krieg PA. The KH domain protein encoded by quaking functions as a dimer and is essential for notochord development in Xenopus embryos Genes and Development. 11: 2176-2190. PMID 9303534 |
0.602 |
|
| 1997 |
McDowell N, Zorn AM, Crease DJ, Gurdon JB. Activin has direct long-range signalling activity and can form a concentration gradient by diffusion. Current Biology : Cb. 7: 671-81. PMID 9285724 DOI: 10.1016/S0960-9822(06)00294-6 |
0.472 |
|
| 1997 |
Zorn AM, Grow M, Patterson KD, Ebersole TA, Chen Q, Artzt K, Krieg PA. Remarkable sequence conservation of transcripts encoding amphibian and mammalian homologues of quaking, a KH domain RNA-binding protein Gene. 188: 199-206. PMID 9133592 DOI: 10.1016/S0378-1119(96)00795-0 |
0.604 |
|
| 1996 |
Gurdon JB, Ryan K, Stennard F, McDowell N, Crease D, Dyson S, Zorn A, Garrett N, Mitchell A, Carnac G. Long range signalling process in embryonic development. The International Journal of Developmental Biology. 57S-58S. PMID 9087695 DOI: 10.1387/Ijdb.9087695 |
0.489 |
|
| 1996 |
Weiner OD, Zorn AM, Krieg PA, Bittner GD. Medium weight neurofilament mRNA in goldfish Mauthner axoplasm. Neuroscience Letters. 213: 83-6. PMID 8858614 DOI: 10.1016/0304-3940(96)12860-3 |
0.504 |
|
| 1992 |
Zorn AM, Krieg PA. Developmental regulation of alternative splicing in the mRNA encoding Xenopus laevis neural cell adhesion molecule (NCAM) Developmental Biology. 149: 197-205. PMID 1728590 DOI: 10.1016/0012-1606(92)90276-M |
0.588 |
|
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