☰

Yafei Mao - Publications

Affiliations: 
University of Washington, Seattle, Seattle, WA 
Area:
Evolution, Genomics, Ecology, Bioinformatics
Tree Info Similar researchers PubMed Report error

30 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Yoo D, Rhie A, Hebbar P, Antonacci F, Logsdon GA, Solar SJ, Antipov D, Pickett BD, Safonova Y, Montinaro F, Luo Y, Malukiewicz J, Storer JM, Lin J, Sequeira AN, ... ... Mao Y, et al. Complete sequencing of ape genomes. Biorxiv : the Preprint Server For Biology. PMID 39131277 DOI: 10.1101/2024.07.31.605654  0.739
2024 Zhang S, Xu N, Fu L, Yang X, Li Y, Yang Z, Feng Y, Ma K, Jiang X, Han J, Hu R, Zhang L, de Gennaro L, Ryabov F, Meng D, ... ... Mao Y, ... ... Mao Y, et al. Comparative genomics of macaques and integrated insights into genetic variation and population history. Biorxiv : the Preprint Server For Biology. PMID 38645259 DOI: 10.1101/2024.04.07.588379  0.71
2024 Logsdon GA, Rozanski AN, Ryabov F, Potapova T, Shepelev VA, Catacchio CR, Porubsky D, Mao Y, Yoo D, Rautiainen M, Koren S, Nurk S, Lucas JK, Hoekzema K, Munson KM, et al. The variation and evolution of complete human centromeres. Nature. PMID 38570684 DOI: 10.1038/s41586-024-07278-3  0.628
2024 Mao YX, Li Y, Yang Z, Xu N, Zhang S, Wang X, Yang X, Sun Q, Mao Y. Comparative transcriptome analysis between rhesus macaques ( ) and crab-eating macaques ( ). Zoological Research. 45: 299-310. PMID 38485500 DOI: 10.24272/j.issn.2095-8137.2023.322  0.39
2024 Mao Y, Harvey WT, Porubsky D, Munson KM, Hoekzema K, Lewis AP, Audano PA, Rozanski A, Yang X, Zhang S, Yoo D, Gordon DS, Fair T, Wei X, Logsdon GA, ... ... Mao Y, et al. Structurally divergent and recurrently mutated regions of primate genomes. Cell. PMID 38428424 DOI: 10.1016/j.cell.2024.01.052  0.641
2023 Okhovat M, VanCampen J, Nevonen KA, Harshman L, Li W, Layman CE, Ward S, Herrera J, Wells J, Sheng RR, Mao Y, Ndjamen B, Lima AC, Vigh-Conrad KA, Stendahl AM, et al. TAD evolutionary and functional characterization reveals diversity in mammalian TAD boundary properties and function. Nature Communications. 14: 8111. PMID 38062027 DOI: 10.1038/s41467-023-43841-8  0.534
2023 Li Z, Liu X, Wang C, Li Z, Jiang B, Zhang R, Tong L, Qu Y, He S, Chen H, Mao Y, Li Q, Pook T, Wu Y, Zan Y, et al. The pig pangenome provides insights into the roles of coding structural variations in genetic diversity and adaptation. Genome Research. PMID 37914227 DOI: 10.1101/gr.277638.122  0.459
2023 Yang X, Mao Y, Wang XK, Ma DN, Xu Z, Gong N, Henning B, Zhang X, He G, Shi YY, Eichler EE, Li ZQ, Takahashi E, Li WD. Population genetics of marmosets in Asian primate research centers and loci associated with epileptic risk revealed by whole-genome sequencing. Zoological Research. 44: 837-847. PMID 37501399 DOI: 10.24272/j.issn.2095-8137.2022.514  0.552
2023 Yang C, Zhou Y, Song Y, Wu D, Zeng Y, Nie L, Liu P, Zhang S, Chen G, Xu J, Zhou H, Zhou L, Qian X, Liu C, Tan S, ... ... Mao Y, et al. The complete and fully-phased diploid genome of a male Han Chinese. Cell Research. PMID 37452091 DOI: 10.1038/s41422-023-00849-5  0.462
2023 He Y, Mao Y. Exploring the primate genome: Unraveling the mysteries of evolution and human disease. Innovation (Cambridge (Mass.)). 4: 100467. PMID 37427354 DOI: 10.1016/j.xinn.2023.100467  0.463
2023 Yang X, Wang X, Zou Y, Zhang S, Xia M, Fu L, Vollger MR, Chen NC, Taylor DJ, Harvey WT, Logsdon GA, Meng D, Shi J, McCoy RC, Schatz MC, ... ... Mao Y, et al. Characterization of large-scale genomic differences in the first complete human genome. Genome Biology. 24: 157. PMID 37403156 DOI: 10.1186/s13059-023-02995-w  0.612
2023 Logsdon GA, Rozanski AN, Ryabov F, Potapova T, Shepelev VA, Mao Y, Rautiainen M, Koren S, Nurk S, Porubsky D, Lucas JK, Hoekzema K, Munson KM, Gerton JL, Phillippy AM, et al. The variation and evolution of complete human centromeres. Biorxiv : the Preprint Server For Biology. PMID 37398417 DOI: 10.1101/2023.05.30.542849  0.616
2023 Okhovat M, VanCampen J, Lima AC, Nevonen KA, Layman CE, Ward S, Herrera J, Stendahl AM, Yang R, Harshman L, Li W, Sheng RR, Mao Y, Fedorov L, Ndjamen B, et al. TAD Evolutionary and functional characterization reveals diversity in mammalian TAD boundary properties and function. Biorxiv : the Preprint Server For Biology. PMID 36945527 DOI: 10.1101/2023.03.07.531534  0.534
2023 Mao Y, Harvey WT, Porubsky D, Munson KM, Hoekzema K, Lewis AP, Audano PA, Rozanski A, Yang X, Zhang S, Gordon DS, Wei X, Logsdon GA, Haukness M, Dishuck PC, et al. Structurally divergent and recurrently mutated regions of primate genomes. Biorxiv : the Preprint Server For Biology. PMID 36945442 DOI: 10.1101/2023.03.07.531415  0.678
2022 Wang T, Kim CN, Bakken TE, Gillentine MA, Henning B, Mao Y, Gilissen C, Nowakowski TJ, Eichler EE. Integrated gene analyses of de novo variants from 46,612 trios with autism and developmental disorders. Proceedings of the National Academy of Sciences of the United States of America. 119: e2203491119. PMID 36350923 DOI: 10.1073/pnas.2203491119  0.481
2022 Mao Y, Zhang G. Publisher Correction: A complete, telomere-to-telomere human genome sequence presents new opportunities for evolutionary genomics. Nature Methods. PMID 35732925 DOI: 10.1038/s41592-022-01551-x  0.495
2022 Mao Y, Zhang G. A complete, telomere-to-telomere human genome sequence presents new opportunities for evolutionary genomics. Nature Methods. 19: 635-638. PMID 35689027 DOI: 10.1038/s41592-022-01512-4  0.497
2022 Ebler J, Ebert P, Clarke WE, Rausch T, Audano PA, Houwaart T, Mao Y, Korbel JO, Eichler EE, Zody MC, Dilthey AT, Marschall T. Pangenome-based genome inference allows efficient and accurate genotyping across a wide spectrum of variant classes. Nature Genetics. 54: 518-525. PMID 35410384 DOI: 10.1038/s41588-022-01043-w  0.57
2021 Hsieh P, Dang V, Vollger MR, Mao Y, Huang TH, Dishuck PC, Baker C, Cantsilieris S, Lewis AP, Munson KM, Sorensen M, Welch AE, Underwood JG, Eichler EE. Evidence for opposing selective forces operating on human-specific duplicated TCAF genes in Neanderthals and humans. Nature Communications. 12: 5118. PMID 34433829 DOI: 10.1038/s41467-021-25435-4  0.571
2021 Mao Y, Catacchio CR, Hillier LW, Porubsky D, Li R, Sulovari A, Fernandes JD, Montinaro F, Gordon DS, Storer JM, Haukness M, Fiddes IT, Murali SC, Dishuck PC, Hsieh P, et al. A high-quality bonobo genome refines the analysis of hominid evolution. Nature. PMID 33953399 DOI: 10.1038/s41586-021-03519-x  0.733
2021 Logsdon GA, Vollger MR, Hsieh P, Mao Y, Liskovykh MA, Koren S, Nurk S, Mercuri L, Dishuck PC, Rhie A, de Lima LG, Dvorkina T, Porubsky D, Harvey WT, Mikheenko A, et al. The structure, function and evolution of a complete human chromosome 8. Nature. PMID 33828295 DOI: 10.1038/s41586-021-03420-7  0.593
2020 Warren WC, Harris RA, Haukness M, Fiddes IT, Murali SC, Fernandes J, Dishuck PC, Storer JM, Raveendran M, Hillier LW, Porubsky D, Mao Y, Gordon D, Vollger MR, Lewis AP, et al. Sequence diversity analyses of an improved rhesus macaque genome enhance its biomedical utility. Science (New York, N.Y.). 370. PMID 33335035 DOI: 10.1126/science.abc6617  0.739
2020 Maggiolini FAM, Sanders AD, Shew CJ, Sulovari A, Mao Y, Puig M, Catacchio CR, Dellino M, Palmisano D, Mercuri L, Bitonto M, Porubský D, Cáceres M, Eichler EE, Ventura M, et al. Single-cell strand sequencing of a macaque genome reveals multiple nested inversions and breakpoint reuse during primate evolution. Genome Research. PMID 33093070 DOI: 10.1101/gr.265322.120  0.746
2020 Cantsilieris S, Sunkin SM, Johnson ME, Anaclerio F, Huddleston J, Baker C, Dougherty ML, Underwood JG, Sulovari A, Hsieh P, Mao Y, Catacchio CR, Malig M, Welch AE, Sorensen M, et al. An evolutionary driver of interspersed segmental duplications in primates. Genome Biology. 21: 202. PMID 32778141 DOI: 10.1186/S13059-020-02074-4  0.691
2020 Mao Y, Hou S, Shi J, Economo EP. TREEasy: an automated workflow to infer gene trees, species trees, and phylogenetic networks from multilocus data. Molecular Ecology Resources. PMID 32073732 DOI: 10.1111/1755-0998.13149  0.612
2019 Mao Y, Satoh N. A Likely Ancient Genome Duplication in the Speciose Reef-Building Coral Genus, Acropora. Iscience. 13: 20-32. PMID 30798090 DOI: 10.1016/j.isci.2019.02.001  0.637
2019 Mao Y. GenoDup Pipeline: a tool to detect genome duplication using the dS-based method. Peerj. 7: e6303. PMID 30697488 DOI: 10.7717/peerj.6303  0.384
2019 Mao Y. Genomic insights into hybridization of reef corals Coral Reefs. 39: 61-67. DOI: 10.1007/s00338-019-01869-7  0.422
2018 Mao Y, Economo EP, Satoh N. The Roles of Introgression and Climate Change in the Rise to Dominance of Acropora Corals. Current Biology : Cb. PMID 30344117 DOI: 10.1016/J.Cub.2018.08.061  0.66
2013 Zhang Y, Shao Z, Yang L, Sun X, Mao Y, Chen J, Wang B. Non-random arrangement of synonymous codons in archaea coding sequences. Genomics. 101: 362-367. PMID 23603537 DOI: 10.1016/J.Ygeno.2013.04.008  0.377
Show low-probability matches.