| Year |
Citation |
Score |
| 2022 |
Protasio AV, Dongen SV, Collins J, Quintais L, Ribeiro DM, Sessler F, Hunt M, Rinaldi G, Collins JJ, Enright AJ, Berriman M. Correction: MiR-277/4989 regulate transcriptional landscape during juvenile to adult transition in the parasitic helminth Schistosoma mansoni. Plos Neglected Tropical Diseases. 16: e0010521. PMID 35666710 DOI: 10.1371/journal.pntd.0010521 |
0.685 |
|
| 2021 |
Blackwell GA, Hunt M, Malone KM, Lima L, Horesh G, Alako BTF, Thomson NR, Iqbal Z. Exploring bacterial diversity via a curated and searchable snapshot of archived DNA sequences. Plos Biology. 19: e3001421. PMID 34752446 DOI: 10.1371/journal.pbio.3001421 |
0.486 |
|
| 2021 |
Colquhoun RM, Hall MB, Lima L, Roberts LW, Malone KM, Hunt M, Letcher B, Hawkey J, George S, Pankhurst L, Iqbal Z. Pandora: nucleotide-resolution bacterial pan-genomics with reference graphs. Genome Biology. 22: 267. PMID 34521456 DOI: 10.1186/s13059-021-02473-1 |
0.416 |
|
| 2021 |
Hawkey J, Paranagama K, Baker KS, Bengtsson RJ, Weill FX, Thomson NR, Baker S, Cerdeira L, Iqbal Z, Hunt M, Ingle DJ, Dallman TJ, Jenkins C, Williamson DA, Holt KE. Global population structure and genotyping framework for genomic surveillance of the major dysentery pathogen, Shigella sonnei. Nature Communications. 12: 2684. PMID 33976138 DOI: 10.1038/s41467-021-22700-4 |
0.341 |
|
| 2020 |
Kumar S, Deng CH, Hunt M, Kirk C, Wiedow C, Rowan D, Wu J, Brewer L. Homozygosity Mapping Reveals Population History and Trait Architecture in Self-Incompatible Pear ( spp.). Frontiers in Plant Science. 11: 590846. PMID 33469460 DOI: 10.3389/fpls.2020.590846 |
0.315 |
|
| 2019 |
Chewapreecha C, Mather AE, Harris SR, Hunt M, Holden MTG, Chaichana C, Wuthiekanun V, Dougan G, Day NPJ, Limmathurotsakul D, Parkhill J, Peacock SJ. Genetic variation associated with infection and the environment in the accidental pathogen . Communications Biology. 2: 428. PMID 31799430 DOI: 10.1038/s42003-019-0678-x |
0.339 |
|
| 2018 |
Liu D, Hunt M, Tsai IJ. Inferring synteny between genome assemblies: a systematic evaluation. Bmc Bioinformatics. 19: 26. PMID 29382321 DOI: 10.1186/s12859-018-2026-4 |
0.738 |
|
| 2017 |
Protasio AV, van Dongen S, Collins J, Quintais L, Ribeiro DM, Sessler F, Hunt M, Rinaldi G, Collins JJ, Enright AJ, Berriman M. MiR-277/4989 regulate transcriptional landscape during juvenile to adult transition in the parasitic helminth Schistosoma mansoni. Plos Neglected Tropical Diseases. 11: e0005559. PMID 28542189 DOI: 10.1371/Journal.Pntd.0005559 |
0.703 |
|
| 2016 |
Page AJ, De Silva N, Hunt M, Quail MA, Parkhill J, Harris SR, Otto TD, Keane JA. Robust high-throughput prokaryote de novo assembly and improvement pipeline for Illumina data. Microbial Genomics. 2: e000083. PMID 28348874 DOI: 10.1099/mgen.0.000083 |
0.509 |
|
| 2016 |
Makendi C, Page AJ, Wren BW, Le Thi Phuong T, Clare S, Hale C, Goulding D, Klemm EJ, Pickard D, Okoro C, Hunt M, Thompson CN, Phu Huong Lan N, Tran Do Hoang N, Thwaites GE, et al. A Phylogenetic and Phenotypic Analysis of Salmonella enterica Serovar Weltevreden, an Emerging Agent of Diarrheal Disease in Tropical Regions. Plos Neglected Tropical Diseases. 10: e0004446. PMID 26867150 DOI: 10.1371/journal.pntd.0004446 |
0.369 |
|
| 2015 |
Hunt M, Silva ND, Otto TD, Parkhill J, Keane JA, Harris SR. Circlator: automated circularization of genome assemblies using long sequencing reads. Genome Biology. 16: 294. PMID 26714481 DOI: 10.1186/s13059-015-0849-0 |
0.421 |
|
| 2015 |
Forster SC, Browne HP, Kumar N, Hunt M, Denise H, Mitchell A, Finn RD, Lawley TD. HPMCD: the database of human microbial communities from metagenomic datasets and microbial reference genomes. Nucleic Acids Research. PMID 26578596 DOI: 10.1093/Nar/Gkv1216 |
0.372 |
|
| 2015 |
Page AJ, Cummins CA, Hunt M, Wong VK, Reuter S, Holden MT, Fookes M, Falush D, Keane JA, Parkhill J. Roary: rapid large-scale prokaryote pan genome analysis. Bioinformatics (Oxford, England). PMID 26198102 DOI: 10.1093/bioinformatics/btv421 |
0.461 |
|
| 2015 |
Hunt M, Gall A, Ong SH, Brener J, Ferns B, Goulder P, Nastouli E, Keane JA, Kellam P, Otto TD. IVA: accurate de novo assembly of RNA virus genomes. Bioinformatics (Oxford, England). 31: 2374-6. PMID 25725497 DOI: 10.1093/Bioinformatics/Btv120 |
0.319 |
|
| 2014 |
Otto TD, Böhme U, Jackson AP, Hunt M, Franke-Fayard B, Hoeijmakers WA, Religa AA, Robertson L, Sanders M, Ogun SA, Cunningham D, Erhart A, Billker O, Khan SM, Stunnenberg HG, et al. A comprehensive evaluation of rodent malaria parasite genomes and gene expression. Bmc Biology. 12: 86. PMID 25359557 DOI: 10.1186/S12915-014-0086-0 |
0.705 |
|
| 2014 |
Hunt M, Newbold C, Berriman M, Otto TD. A comprehensive evaluation of assembly scaffolding tools. Genome Biology. 15: R42. PMID 24581555 DOI: 10.1186/Gb-2014-15-3-R42 |
0.598 |
|
| 2014 |
Cotton JA, Lilley CJ, Jones LM, Kikuchi T, Reid AJ, Thorpe P, Tsai IJ, Beasley H, Blok V, Cock PJ, Eves-van den Akker S, Holroyd N, Hunt M, Mantelin S, Naghra H, et al. The genome and life-stage specific transcriptomes of Globodera pallida elucidate key aspects of plant parasitism by a cyst nematode. Genome Biology. 15: R43. PMID 24580726 DOI: 10.1186/Gb-2014-15-3-R43 |
0.733 |
|
| 2014 |
Tsai IJ, Hunt M, Holroyd N, Huckvale T, Berriman M, Kikuchi T. Summarizing specific profiles in illumina sequencing from whole-genome amplified DNA Dna Research. 21: 243-254. PMID 24353264 DOI: 10.1093/Dnares/Dst054 |
0.719 |
|
| 2013 |
Laing R, Kikuchi T, Martinelli A, Tsai IJ, Beech RN, Redman E, Holroyd N, Bartley DJ, Beasley H, Britton C, Curran D, Devaney E, Gilabert A, Hunt M, Jackson F, et al. The genome and transcriptome of Haemonchus contortus, a key model parasite for drug and vaccine discovery. Genome Biology. 14: R88. PMID 23985316 DOI: 10.1186/Gb-2013-14-8-R88 |
0.738 |
|
| 2013 |
Bradnam KR, Fass JN, Alexandrov A, Baranay P, Bechner M, Birol I, Boisvert S, Chapman JA, Chapuis G, Chikhi R, Chitsaz H, Chou WC, Corbeil J, Del Fabbro C, Docking TR, ... ... Hunt M, et al. Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species. Gigascience. 2: 10. PMID 23870653 DOI: 10.1186/2047-217X-2-10 |
0.462 |
|
| 2013 |
Hunt M, Kikuchi T, Sanders M, Newbold C, Berriman M, Otto TD. REAPR: a universal tool for genome assembly evaluation. Genome Biology. 14: R47. PMID 23710727 DOI: 10.1186/Gb-2013-14-5-R47 |
0.643 |
|
| 2013 |
Saunders GI, Wasmuth JD, Beech R, Laing R, Hunt M, Naghra H, Cotton JA, Berriman M, Britton C, Gilleard JS. Characterization and comparative analysis of the complete Haemonchus contortus β-tubulin gene family and implications for benzimidazole resistance in strongylid nematodes. International Journal For Parasitology. 43: 465-75. PMID 23416426 DOI: 10.1016/J.Ijpara.2012.12.011 |
0.533 |
|
| 2012 |
Protasio AV, Tsai IJ, Babbage A, Nichol S, Hunt M, Aslett MA, De Silva N, Velarde GS, Anderson TJ, Clark RC, Davidson C, Dillon GP, Holroyd NE, LoVerde PT, Lloyd C, et al. A systematically improved high quality genome and transcriptome of the human blood fluke Schistosoma mansoni. Plos Neglected Tropical Diseases. 6: e1455. PMID 22253936 DOI: 10.1371/Journal.Pntd.0001455 |
0.644 |
|
| 2012 |
Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C. Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel. Bmc Genomics. 13: 4. PMID 22216965 DOI: 10.1186/1471-2164-13-4 |
0.562 |
|
| 2011 |
Kikuchi T, Cotton JA, Dalzell JJ, Hasegawa K, Kanzaki N, McVeigh P, Takanashi T, Tsai IJ, Assefa SA, Cock PJ, Otto TD, Hunt M, Reid AJ, Sanchez-Flores A, Tsuchihara K, et al. Genomic insights into the origin of parasitism in the emerging plant pathogen Bursaphelenchus xylophilus. Plos Pathogens. 7: e1002219. PMID 21909270 DOI: 10.1371/Journal.Ppat.1002219 |
0.74 |
|
| 2011 |
Laing R, Hunt M, Protasio AV, Saunders G, Mungall K, Laing S, Jackson F, Quail M, Beech R, Berriman M, Gilleard JS. Annotation of two large contiguous regions from the Haemonchus contortus genome using RNA-seq and comparative analysis with Caenorhabditis elegans. Plos One. 6: e23216. PMID 21858033 DOI: 10.1371/Journal.Pone.0023216 |
0.773 |
|
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