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Jonathan A. Eisen

Affiliations: 
Evolution and Ecology University of California, Davis, Davis, CA 
Area:
Genomics, Microbial Diversity, Evolution, Microbial Ecology, Microbiology
Website:
https://biology.ucdavis.edu/people/jonathan-eisen
Google:
"Jonathan Andrew Eisen"
Bio:

http://genomecenter.ucdavis.edu/people/faculty/name/jonathan-eisen/
https://phylogenomics.me/
https://www.researchgate.net/profile/Jonathan_Eisen
https://scholar.google.com/citations?user=LrlwhwUAAAAJ&hl=en

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Parents

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William A. Calder research assistant 1988-1988 University of Arizona
Fakhri A. Bazzaz research assistant 1988-1989 Harvard (Terrestrial Ecology Tree)
Colleen Cavanaugh research assistant 1989-1991 Harvard
Ward Watt research assistant 1991-1991
Philip C. Hanawalt grad student 1991-1998 Stanford (Neurotree)
 (The evolution of DNA repair genes, proteins, and processes.)

Children

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Srijak Bhatnagar research assistant 2008-2011 UC Davis Genome Center (Neurotree)
Amber Hartman grad student 2003-2009 Johns Hopkins (Neurotree)
Jenna M. Lang grad student 2012 UC Davis
Elizabeth G. Wilbanks grad student 2014 UC Davis
Srijak Bhatnagar grad student 2011-2017 UC Davis (Neurotree)
Ladan Doroud grad student 2013-2017 UC Davis (Neurotree)
Russell Neches grad student 2013-2018 UC Davis (Neurotree)
Laura Vann grad student 2013-2018 UC Davis (Neurotree)
Jonathan Badger post-doc UC Davis
Holly Bik post-doc UC Davis
Sourav Chatterji post-doc UC Davis
Aaron E. Darling post-doc UC Davis
Chris Desjardins post-doc The Institute for Genomic Research
Sarah Hird post-doc UC Davis (Neurotree)
Morgan Langille post-doc UC Davis (Neurotree)
James Sakwa post-doc The Institute for Genomic Research
Thomas J. Sharpton post-doc UC Davis
Dongying Wu post-doc UC Davis
Martin Wu post-doc UC Davis
Holly H. Ganz research scientist 2013-2016 UC Davis

Collaborators

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Katherine S. Pollard collaborator
BETA: Related publications

Publications

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De León ME, Wilson HS, Jospin G, et al. (2024) Corrigendum: 'Genome sequencing and multifaceted taxonomic analysis of novel strains of violacein-producing bacteria and non-violacein-producing close relatives'. Microbial Genomics. 10
Rojas CA, Entrolezo Z, Jarett JK, et al. (2023) Microbiome Responses to Fecal Microbiota Transplantation in Cats with Chronic Digestive Issues. Veterinary Sciences. 10
Rojas CA, Gardy J, Eisen JA, et al. (2023) Recovery of 52 bacterial genomes from the fecal microbiome of the domestic cat () using Hi-C proximity ligation and shotgun metagenomics. Microbiology Resource Announcements. 12: e0060123
De León ME, Wilson HS, Jospin G, et al. (2023) Genome sequencing and multifaceted taxonomic analysis of novel strains of violacein-producing bacteria and non-violacein-producing close relatives. Microbial Genomics. 9
Tran MT, Seuylemezian A, Wright A, et al. (2023) Draft Genome Sequences of Spacecraft-Associated Microbes Isolated from Six NASA Missions. Microbiology Resource Announcements. 12: e0101122
Rojas CA, Holekamp KE, Viladomat Jasso M, et al. (2022) Taxonomic, Genomic, and Functional Variation in the Gut Microbiomes of Wild Spotted Hyenas Across 2 Decades of Study. Msystems. e0096522
Ganz HH, Jospin G, Rojas CA, et al. (2022) The Kitty Microbiome Project: Defining the Healthy Fecal "Core Microbiome" in Pet Domestic Cats. Veterinary Sciences. 9
Wilbanks EG, Doré H, Ashby MH, et al. (2022) Metagenomic methylation patterns resolve bacterial genomes of unusual size and structural complexity. The Isme Journal
De León ME, Wilson HS, Jospin G, et al. (2021) Draft Genome Sequences and Genomic Analysis for Pigment Production in Bacteria Isolated from Blue Discolored Soymilk and Tofu. Journal of Genomics. 9: 55-67
Leray M, Wilkins LGE, Apprill A, et al. (2021) Natural experiments and long-term monitoring are critical to understand and predict marine host-microbe ecology and evolution. Plos Biology. 19: e3001322
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