| Year |
Citation |
Score |
| 2023 |
Zhang W, Zhang Z, Liu B, Chen J, Zhao Y, Huang Y. Comparative analysis of 17 complete chloroplast genomes reveals intraspecific variation and relationships among (Miq.) Pax populations. Frontiers in Plant Science. 14: 1163325. PMID 37426955 DOI: 10.3389/fpls.2023.1163325 |
0.318 |
|
| 2019 |
Lee H, Zhang Z, Krause HM. Long Noncoding RNAs and Repetitive Elements: Junk or Intimate Evolutionary Partners? Trends in Genetics : Tig. PMID 31662190 DOI: 10.1016/J.Tig.2019.09.006 |
0.376 |
|
| 2019 |
Daher-Reyes GS, Kim T, Kim KH, Ahn J, Stockley TL, Capo-Chichi JM, Al-Shaibani Z, Law A, Lam W, Michelis FV, Viswabandya A, Lipton JH, Kumar R, Mattsson J, Schimmer AD, ... ... Zhang Z, et al. Prognostic Impact of a Composite Genetic Profile Defined By Cytogenetics and Next Generation Sequencing at Diagnosis on Treatment Outcomes Following Allogeneic Hematopoietic Stem Cell Transplantation in Acute Myeloid Leukemia Blood. 134: 3317-3317. DOI: 10.1182/Blood-2019-125780 |
0.302 |
|
| 2018 |
Wang Y, Li Y, Yue M, Wang J, Kumar S, Wechsler-Reya RJ, Zhang Z, Ogawa Y, Kellis M, Duester G, Zhao JC. Publisher Correction: N-methyladenosine RNA modification regulates embryonic neural stem cell self-renewal through histone modifications. Nature Neuroscience. PMID 29880878 DOI: 10.1038/S41593-018-0169-2 |
0.327 |
|
| 2018 |
Ahn JS, Kim HJ, Kim YK, Lee SS, Ahn SY, Jung SH, Yang DH, Lee JJ, Park HJ, Lee JY, Choi SH, Jung CW, Jang JH, Kim HJ, Moon JH, ... ... Zhang Z, et al. Assessment of a new genomic classification system in acute myeloid leukemia with a normal karyotype. Oncotarget. 9: 4961-4968. PMID 29435155 DOI: 10.18632/Oncotarget.23575 |
0.31 |
|
| 2018 |
Wang Y, Li Y, Yue M, Wang J, Kumar S, Wechsler-Reya RJ, Zhang Z, Ogawa Y, Kellis M, Duester G, Zhao JC. N6-methyladenosine RNA modification regulates embryonic neural stem cell self-renewal through histone modifications. Nature Neuroscience. PMID 29335608 DOI: 10.1038/S41593-017-0057-1 |
0.386 |
|
| 2018 |
Kim T, Moon JH, Ahn J, Tyndel MS, Lee S, Ahn S, Jung S, Yang D, Lee J, Choi S, Lee J, Lee Y, Sohn SK, Zhang Z, Kim H, et al. RNA Sequencing-Based Measurement of Fusion-Transcript for Minimal Residual Disease (MRD) Monitoring in Core-Binding Factor Acute Myeloid Leukemia (CBF-AML) Blood. 132: 2669-2669. DOI: 10.1182/Blood-2018-99-112037 |
0.323 |
|
| 2017 |
Kim TH, Tyndel MS, Kim HJ, Ahn JS, Choi SH, Park HJ, Kim YK, Yang DH, Lee JJ, Jung SH, Kim SY, Min YH, Cheong JW, Sohn SK, Moon JH, ... ... Zhang Z, et al. The clonal origins of leukemic progression of myelodysplasia. Leukemia. PMID 28090092 DOI: 10.1038/Leu.2017.17 |
0.308 |
|
| 2016 |
Yang L, Zhang Z, He S. Both male-biased and female-biased genes evolve faster in fish genomes. Genome Biology and Evolution. PMID 27742722 DOI: 10.1093/Gbe/Evw239 |
0.322 |
|
| 2016 |
Styles EB, Founk KJ, Zamparo LA, Sing TL, Altintas D, Ribeyre C, Ribaud V, Rougemont J, Mayhew D, Costanzo M, Usaj M, Verster AJ, Koch EN, Novarina D, Graf M, ... ... Zhang Z, et al. Exploring Quantitative Yeast Phenomics with Single-Cell Analysis of DNA Damage Foci. Cell Systems. PMID 27617677 DOI: 10.1016/J.Cels.2016.08.008 |
0.769 |
|
| 2016 |
Olsen JB, Wong L, Deimling S, Miles A, Guo H, Li Y, Zhang Z, Greenblatt JF, Emili A, Tropepe V. G9a and ZNF644 Physically Associate to Suppress Progenitor Gene Expression during Neurogenesis. Stem Cell Reports. PMID 27546533 DOI: 10.1016/J.Stemcr.2016.06.012 |
0.401 |
|
| 2016 |
Paul JM, Toosi B, Vizeacoumar FS, Bhanumathy KK, Li Y, Gerger C, El Zawily A, Freywald T, Anderson DH, Mousseau D, Kanthan R, Zhang Z, Vizeacoumar FJ, Freywald A. Targeting synthetic lethality between the SRC kinase and the EPHB6 receptor may benefit cancer treatment. Oncotarget. PMID 27418135 DOI: 10.18632/Oncotarget.10569 |
0.394 |
|
| 2016 |
Yimit A, Kim T, Anand R, Meister S, Ou J, Haber JE, Zhang Z, Brown GW. MTE1 Functions with MPH1 in Double-Strand Break Repair. Genetics. PMID 26920759 DOI: 10.1534/Genetics.115.185454 |
0.31 |
|
| 2016 |
Gu Z, Jin K, Crabbe MJ, Zhang Y, Liu X, Huang Y, Hua M, Nan P, Zhang Z, Zhong Y. Enrichment analysis of Alu elements with different spatial chromatin proximity in the human genome. Protein & Cell. PMID 26861146 DOI: 10.1007/S13238-015-0240-7 |
0.356 |
|
| 2016 |
Kim T, Moon JH, Lee YJ, Tyndel M, Ahn J, Kim H, Kim Y, Lee S, Ahn S, Jung S, Yang D, Lee J, Park HJ, Choi SH, Jung CW, ... ... Zhang Z, et al. Longitudinal Tracking of MDS Patients Using Next Generation Sequencing Provides a Predictive Measure for Azacitidine Response and AML Progression Blood. 128: 52-52. DOI: 10.1182/Blood.V128.22.52.52 |
0.332 |
|
| 2016 |
Kim T, Tyndel M, Kim HJ, Ahn J, Choi SH, Park HJ, Kim Y, Yang D, Lee J, Jung S, Kim SY, Min Y, Cheong J, Sohn SK, Moon JH, ... ... Zhang Z, et al. The Clonal Origins of Leukemic Progression of Myelodysplasia Blood. 128: 4307-4307. DOI: 10.1182/Blood.V128.22.4307.4307 |
0.333 |
|
| 2015 |
Li J, Ma Z, Shi M, Malty RH, Aoki H, Minic Z, Phanse S, Jin K, Wall DP, Zhang Z, Urban AE, Hallmayer J, Babu M, Snyder M. Identification of Human Neuronal Protein Complexes Reveals Biochemical Activities and Convergent Mechanisms of Action in Autism Spectrum Disorders. Cell Systems. 1: 361-374. PMID 26949739 DOI: 10.1016/J.Cels.2015.11.002 |
0.419 |
|
| 2015 |
Wong KC, Li Y, Peng C, Moses AM, Zhang Z. Computational learning on specificity-determining residue-nucleotide interactions. Nucleic Acids Research. PMID 26527718 DOI: 10.1093/Nar/Gkv1134 |
0.526 |
|
| 2015 |
Dibitetto D, Ferrari M, Rawal CC, Balint A, Kim T, Zhang Z, Smolka MB, Brown GW, Marini F, Pellicioli A. Slx4 and Rtt107 control checkpoint signalling and DNA resection at double-strand breaks. Nucleic Acids Research. PMID 26490958 DOI: 10.1093/Nar/Gkv1080 |
0.307 |
|
| 2015 |
Li Y, Wang Y, Zhang Z, Zamudio AV, Zhao JC. Genome-wide detection of high abundance N6-methyladenosine sites by microarray. Rna (New York, N.Y.). 21: 1511-8. PMID 26092943 DOI: 10.1261/Rna.051474.115 |
0.368 |
|
| 2015 |
Jessulat M, Malty RH, Nguyen-Tran DH, Deineko V, Aoki H, Vlasblom J, Omidi K, Jin K, Minic Z, Hooshyar M, Burnside D, Samanfar B, Phanse S, Freywald T, Prasad B, ... Zhang Z, et al. Spindle Checkpoint Factors Bub1 and Bub2 Promote DNA Double-Strand Break Repair by Nonhomologous End Joining. Molecular and Cellular Biology. 35: 2448-63. PMID 25963654 DOI: 10.1128/Mcb.00007-15 |
0.34 |
|
| 2015 |
Li Y, Zhang Z. Computational Biology in microRNA. Wiley Interdisciplinary Reviews. Rna. 6: 435-52. PMID 25914300 DOI: 10.1002/Wrna.1286 |
0.383 |
|
| 2015 |
Liang C, Li Y, Luo J, Zhang Z. A novel motif-discovery algorithm to identify co-regulatory motifs in large transcription factor and microRNA co-regulatory networks in human. Bioinformatics (Oxford, England). 31: 2348-55. PMID 25788622 DOI: 10.1093/Bioinformatics/Btv159 |
0.409 |
|
| 2015 |
Jin K, Musso G, Vlasblom J, Jessulat M, Deineko V, Negroni J, Mosca R, Malty R, Nguyen-Tran DH, Aoki H, Minic Z, Freywald T, Phanse S, Xiang Q, Freywald A, ... ... Zhang Z, et al. Yeast mitochondrial protein-protein interactions reveal diverse complexes and disease-relevant functional relationships. Journal of Proteome Research. 14: 1220-37. PMID 25546499 DOI: 10.1021/Pr501148Q |
0.699 |
|
| 2015 |
Yang L, Wang Y, Zhang Z, He S. Comprehensive transcriptome analysis reveals accelerated genic evolution in a Tibet fish, Gymnodiptychus pachycheilus. Genome Biology and Evolution. 7: 251-61. PMID 25543049 DOI: 10.1093/Gbe/Evu279 |
0.388 |
|
| 2015 |
Malty RH, Jessulat M, Jin K, Musso G, Vlasblom J, Phanse S, Zhang Z, Babu M. Mitochondrial targets for pharmacological intervention in human disease. Journal of Proteome Research. 14: 5-21. PMID 25367773 DOI: 10.1021/Pr500813F |
0.678 |
|
| 2015 |
Wong KC, Li Y, Peng C, Zhang Z. SignalSpider: probabilistic pattern discovery on multiple normalized ChIP-Seq signal profiles. Bioinformatics (Oxford, England). 31: 17-24. PMID 25192742 DOI: 10.1093/Bioinformatics/Btu604 |
0.593 |
|
| 2015 |
Kim TS, Zhang Z, Tyndel M, Ahn J, Kim Y, Choi SH, Kim H, Lee M, Choi M, Lipton JH, Kim DDH. Whole Exome Sequencing Reveals the Landscape of Clonal Evolution from MDS to AML Progression Blood. 126: 2596-2596. DOI: 10.1182/Blood.V126.23.2596.2596 |
0.345 |
|
| 2014 |
Li Y, Zhang Z. Potential microRNA-mediated oncogenic intercellular communication revealed by pan-cancer analysis. Scientific Reports. 4: 7097. PMID 25403569 DOI: 10.1038/Srep07097 |
0.368 |
|
| 2014 |
Li Y, Liang M, Zhang Z. Regression analysis of combined gene expression regulation in acute myeloid leukemia. Plos Computational Biology. 10: e1003908. PMID 25340776 DOI: 10.1371/Journal.Pcbi.1003908 |
0.474 |
|
| 2014 |
Cromar G, Wong KC, Loughran N, On T, Song H, Xiong X, Zhang Z, Parkinson J. New tricks for "old" domains: how novel architectures and promiscuous hubs contributed to the organization and evolution of the ECM. Genome Biology and Evolution. 6: 2897-917. PMID 25323955 DOI: 10.1093/Gbe/Evu228 |
0.515 |
|
| 2014 |
Li Y, Liang C, Easterbrook S, Luo J, Zhang Z. Investigating the functional implications of reinforcing feedback loops in transcriptional regulatory networks. Molecular Biosystems. 10: 3238-48. PMID 25286350 DOI: 10.1039/C4Mb00526K |
0.416 |
|
| 2014 |
Li Y, Liang C, Wong KC, Luo J, Zhang Z. Mirsynergy: detecting synergistic miRNA regulatory modules by overlapping neighbourhood expansion. Bioinformatics (Oxford, England). 30: 2627-35. PMID 24894504 DOI: 10.1093/Bioinformatics/Btu373 |
0.514 |
|
| 2014 |
Li J, Kim T, Nutiu R, Ray D, Hughes TR, Zhang Z. Identifying mRNA sequence elements for target recognition by human Argonaute proteins. Genome Research. 24: 775-85. PMID 24663241 DOI: 10.1101/Gr.162230.113 |
0.429 |
|
| 2014 |
Li Y, Liang C, Wong KC, Jin K, Zhang Z. Inferring probabilistic miRNA-mRNA interaction signatures in cancers: a role-switch approach. Nucleic Acids Research. 42: e76. PMID 24609385 DOI: 10.1093/Nar/Gku182 |
0.521 |
|
| 2014 |
Wang Y, Li Y, Toth JI, Petroski MD, Zhang Z, Zhao JC. N6-methyladenosine modification destabilizes developmental regulators in embryonic stem cells. Nature Cell Biology. 16: 191-8. PMID 24394384 DOI: 10.1038/Ncb2902 |
0.377 |
|
| 2014 |
Wong KC, Zhang Z. SNPdryad: predicting deleterious non-synonymous human SNPs using only orthologous protein sequences. Bioinformatics (Oxford, England). PMID 24389653 DOI: 10.1093/Bioinformatics/Btt769 |
0.504 |
|
| 2014 |
Li Y, Goldenberg A, Wong KC, Zhang Z. A probabilistic approach to explore human miRNA targetome by integrating miRNA-overexpression data and sequence information. Bioinformatics (Oxford, England). 30: 621-8. PMID 24135265 DOI: 10.1093/Bioinformatics/Btt599 |
0.519 |
|
| 2013 |
Snider J, Hanif A, Lee ME, Jin K, Yu AR, Graham C, Chuk M, Damjanovic D, Wierzbicka M, Tang P, Balderes D, Wong V, Jessulat M, Darowski KD, San Luis BJ, ... ... Zhang Z, et al. Mapping the functional yeast ABC transporter interactome. Nature Chemical Biology. 9: 565-72. PMID 23831759 DOI: 10.1038/Nchembio.1293 |
0.302 |
|
| 2013 |
Wong KC, Chan TM, Peng C, Li Y, Zhang Z. DNA motif elucidation using belief propagation. Nucleic Acids Research. 41: e153. PMID 23814189 DOI: 10.1093/Nar/Gkt574 |
0.535 |
|
| 2013 |
Li Y, Zhao DY, Greenblatt JF, Zhang Z. RIPSeeker: a statistical package for identifying protein-associated transcripts from RIP-seq experiments. Nucleic Acids Research. 41: e94. PMID 23455476 DOI: 10.1093/Nar/Gkt142 |
0.468 |
|
| 2013 |
Li J, Zhang Z. miRNA regulatory variation in human evolution. Trends in Genetics : Tig. 29: 116-24. PMID 23128010 DOI: 10.1016/J.Tig.2012.10.008 |
0.449 |
|
| 2012 |
Yang Z, Dong D, Zhang Z, Crabbe MJ, Wang L, Zhong Y. Preferential regulation of stably expressed genes in the human genome suggests a widespread expression buffering role of microRNAs. Bmc Genomics. 13: S14. PMID 23281599 DOI: 10.1186/1471-2164-13-S7-S14 |
0.377 |
|
| 2012 |
Li J, Liu Y, Xin X, Kim TS, Cabeza EA, Ren J, Nielsen R, Wrana JL, Zhang Z. Evidence for positive selection on a number of MicroRNA regulatory interactions during recent human evolution. Plos Genetics. 8: e1002578. PMID 22457636 DOI: 10.1371/Journal.Pgen.1002578 |
0.42 |
|
| 2012 |
Musso G, Emili A, Zhang Z. Characterization and evolutionary analysis of protein-protein interaction networks. Methods in Molecular Biology (Clifton, N.J.). 856: 363-80. PMID 22399467 DOI: 10.1007/978-1-61779-585-5_15 |
0.693 |
|
| 2012 |
Jin K, Li J, Vizeacoumar FS, Li Z, Min R, Zamparo L, Vizeacoumar FJ, Datti A, Andrews B, Boone C, Zhang Z. PhenoM: a database of morphological phenotypes caused by mutation of essential genes in Saccharomyces cerevisiae. Nucleic Acids Research. 40: D687-94. PMID 22009677 DOI: 10.1093/Nar/Gkr827 |
0.763 |
|
| 2012 |
Wong K, Wu C, Mok RK, Peng C, Zhang Z. Evolutionary multimodal optimization using the principle of locality Information Sciences. 194: 138-170. DOI: 10.1016/J.Ins.2011.12.016 |
0.421 |
|
| 2011 |
Gong Y, Zhang Z, Houry WA. Bioinformatic approach to identify chaperone pathway relationship from large-scale interaction networks. Methods in Molecular Biology (Clifton, N.J.). 787: 189-203. PMID 21898237 DOI: 10.1007/978-1-61779-295-3_15 |
0.353 |
|
| 2011 |
Musso G, Emili A, Zhang Z. Filtering and interpreting large-scale experimental protein-protein interaction data. Methods in Molecular Biology (Clifton, N.J.). 781: 295-309. PMID 21877287 DOI: 10.1007/978-1-61779-276-2_14 |
0.696 |
|
| 2011 |
Li Z, Vizeacoumar FJ, Bahr S, Li J, Warringer J, Vizeacoumar FS, Min R, Vandersluis B, Bellay J, Devit M, Fleming JA, Stephens A, Haase J, Lin ZY, Baryshnikova A, ... ... Zhang Z, et al. Systematic exploration of essential yeast gene function with temperature-sensitive mutants. Nature Biotechnology. 29: 361-7. PMID 21441928 DOI: 10.1038/Nbt.1832 |
0.473 |
|
| 2011 |
Dong D, Shao X, Zhang Z. Differential effects of chromatin regulators and transcription factors on gene regulation: a nucleosomal perspective. Bioinformatics (Oxford, England). 27: 147-52. PMID 21075748 DOI: 10.1093/Bioinformatics/Btq637 |
0.311 |
|
| 2011 |
Dong D, Yuan Z, Zhang Z. Evidences for increased expression variation of duplicate genes in budding yeast: from cis- to trans-regulation effects. Nucleic Acids Research. 39: 837-47. PMID 20935054 DOI: 10.1093/Nar/Gkq874 |
0.359 |
|
| 2011 |
Turinsky AL, Turner B, Borja RC, Gleeson JA, Heath M, Pu S, Switzer T, Dong D, Gong Y, On T, Xiong X, Emili A, Greenblatt J, Parkinson J, Zhang Z, et al. DAnCER: disease-annotated chromatin epigenetics resource. Nucleic Acids Research. 39: D889-94. PMID 20876685 DOI: 10.1093/Nar/Gkq857 |
0.395 |
|
| 2011 |
Dong D, Shao X, Deng N, Zhang Z. Gene expression variations are predictive for stochastic noise. Nucleic Acids Research. 39: 403-13. PMID 20860999 DOI: 10.1093/Nar/Gkq844 |
0.3 |
|
| 2010 |
Pu S, Turinsky AL, Vlasblom J, On T, Xiong X, Emili A, Zhang Z, Greenblatt J, Parkinson J, Wodak SJ. Expanding the landscape of chromatin modification (CM)-related functional domains and genes in human. Plos One. 5: e14122. PMID 21124763 DOI: 10.1371/Journal.Pone.0014122 |
0.32 |
|
| 2010 |
Li J, Yuan Z, Zhang Z. The cellular robustness by genetic redundancy in budding yeast. Plos Genetics. 6: e1001187. PMID 21079672 DOI: 10.1371/Journal.Pgen.1001187 |
0.487 |
|
| 2010 |
Li J, Liu Y, Kim T, Min R, Zhang Z. Gene expression variability within and between human populations and implications toward disease susceptibility. Plos Computational Biology. 6. PMID 20865155 DOI: 10.1371/Journal.Pcbi.1000910 |
0.424 |
|
| 2010 |
Li J, Min R, Vizeacoumar FJ, Jin K, Xin X, Zhang Z. Exploiting the determinants of stochastic gene expression in Saccharomyces cerevisiae for genome-wide prediction of expression noise. Proceedings of the National Academy of Sciences of the United States of America. 107: 10472-7. PMID 20489180 DOI: 10.1073/Pnas.0914302107 |
0.456 |
|
| 2010 |
On T, Xiong X, Pu S, Turinsky A, Gong Y, Emili A, Zhang Z, Greenblatt J, Wodak SJ, Parkinson J. The evolutionary landscape of the chromatin modification machinery reveals lineage specific gains, expansions, and losses. Proteins. 78: 2075-89. PMID 20455264 DOI: 10.1002/Prot.22723 |
0.394 |
|
| 2010 |
Li J, Yuan Z, Zhang Z. Revisiting the contribution of cis-elements to expression divergence between duplicated genes: the role of chromatin structure. Molecular Biology and Evolution. 27: 1461-6. PMID 20139146 DOI: 10.1093/Molbev/Msq041 |
0.432 |
|
| 2010 |
Vizeacoumar FJ, van Dyk N, S Vizeacoumar F, Cheung V, Li J, Sydorskyy Y, Case N, Li Z, Datti A, Nislow C, Raught B, Zhang Z, Frey B, Bloom K, Boone C, et al. Integrating high-throughput genetic interaction mapping and high-content screening to explore yeast spindle morphogenesis. The Journal of Cell Biology. 188: 69-81. PMID 20065090 DOI: 10.1083/Jcb.200909013 |
0.456 |
|
| 2010 |
Li R, Fan W, Tian G, Zhu H, He L, Cai J, Huang Q, Cai Q, Li B, Bai Y, Zhang Z, Zhang Y, Wang W, Li J, Wei F, ... ... Zhang Z, et al. The sequence and de novo assembly of the giant panda genome. Nature. 463: 311-7. PMID 20010809 DOI: 10.1038/Nature08696 |
0.388 |
|
| 2010 |
Li J, Liu Y, Dong D, Zhang Z. Evolution of an X-linked primate-specific micro RNA cluster. Molecular Biology and Evolution. 27: 671-83. PMID 19933172 DOI: 10.1093/Molbev/Msp284 |
0.407 |
|
| 2010 |
Li R, Fan W, Tian G, Zhu H, He L, Cai J, Huang Q, Cai Q, Li B, Bai Y, Zhang Z, Zhang Y, Wang W, Li J, Wei F, ... ... Zhang Z, et al. Erratum: The sequence and de novo assembly of the giant panda genome Nature. 463: 1106-1106. DOI: 10.1038/Nature08846 |
0.319 |
|
| 2009 |
Dong D, He G, Zhang S, Zhang Z. Evolution of olfactory receptor genes in primates dominated by birth-and-death process. Genome Biology and Evolution. 1: 258-64. PMID 20333195 DOI: 10.1093/Gbe/Evp026 |
0.353 |
|
| 2009 |
Li J, Min R, Bonner A, Zhang Z. A probabilistic framework to improve microrna target prediction by incorporating proteomics data. Journal of Bioinformatics and Computational Biology. 7: 955-72. PMID 20014473 DOI: 10.1142/S021972000900445X |
0.409 |
|
| 2009 |
Feng ZP, Zhang Z, van Kesteren RE, Straub VA, van Nierop P, Jin K, Nejatbakhsh N, Goldberg JI, Spencer GE, Yeoman MS, Wildering W, Coorssen JR, Croll RP, Buck LT, Syed NI, et al. Transcriptome analysis of the central nervous system of the mollusc Lymnaea stagnalis. Bmc Genomics. 10: 451. PMID 19775440 DOI: 10.1186/1471-2164-10-451 |
0.345 |
|
| 2009 |
Guo X, Zhang Z, Gerstein MB, Zheng D. Small RNAs originated from pseudogenes: cis- or trans-acting? Plos Computational Biology. 5: e1000449. PMID 19649160 DOI: 10.1371/Journal.Pcbi.1000449 |
0.489 |
|
| 2009 |
Gong Y, Kakihara Y, Krogan N, Greenblatt J, Emili A, Zhang Z, Houry WA. An atlas of chaperone-protein interactions in Saccharomyces cerevisiae: implications to protein folding pathways in the cell. Molecular Systems Biology. 5: 275. PMID 19536198 DOI: 10.1038/Msb.2009.26 |
0.318 |
|
| 2009 |
Kittanakom S, Chuk M, Wong V, Snyder J, Edmonds D, Lydakis A, Zhang Z, Auerbach D, Stagljar I. Analysis of membrane protein complexes using the split-ubiquitin membrane yeast two-hybrid (MYTH) system. Methods in Molecular Biology (Clifton, N.J.). 548: 247-71. PMID 19521829 DOI: 10.1007/978-1-59745-540-4_14 |
0.311 |
|
| 2009 |
Min R, Bonner A, Li J, Zhang Z. Learned random-walk kernels and empirical-map kernels for protein sequence classification. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 16: 457-74. PMID 19254184 DOI: 10.1089/Cmb.2008.0031 |
0.442 |
|
| 2008 |
Li J, Musso G, Zhang Z. Preferential regulation of duplicated genes by microRNAs in mammals. Genome Biology. 9: R132. PMID 18727826 DOI: 10.1186/Gb-2008-9-8-R132 |
0.727 |
|
| 2008 |
Borozan I, Chen L, Paeper B, Heathcote JE, Edwards AM, Katze M, Zhang Z, McGilvray ID. MAID : an effect size based model for microarray data integration across laboratories and platforms. Bmc Bioinformatics. 9: 305. PMID 18616827 DOI: 10.1186/1471-2105-9-305 |
0.361 |
|
| 2008 |
Musso G, Costanzo M, Huangfu M, Smith AM, Paw J, San Luis BJ, Boone C, Giaever G, Nislow C, Emili A, Zhang Z. The extensive and condition-dependent nature of epistasis among whole-genome duplicates in yeast. Genome Research. 18: 1092-9. PMID 18463300 DOI: 10.1101/Gr.076174.108 |
0.716 |
|
| 2008 |
Davids W, Zhang Z. The impact of horizontal gene transfer in shaping operons and protein interaction networks--direct evidence of preferential attachment. Bmc Evolutionary Biology. 8: 23. PMID 18218112 DOI: 10.1186/1471-2148-8-23 |
0.379 |
|
| 2008 |
Gunewardena S, Zhang Z. A hybrid model for robust detection of transcription factor binding sites. Bioinformatics (Oxford, England). 24: 484-91. PMID 18184687 DOI: 10.1093/Bioinformatics/Btm629 |
0.6 |
|
| 2007 |
Musso GA, Zhang Z, Emili A. Experimental and computational procedures for the assessment of protein complexes on a genome-wide scale. Chemical Reviews. 107: 3585-600. PMID 17630806 DOI: 10.1021/Cr0682857 |
0.691 |
|
| 2007 |
Möckli N, Deplazes A, Hassa PO, Zhang Z, Peter M, Hottiger MO, Stagljar I, Auerbach D. Yeast split-ubiquitin-based cytosolic screening system to detect interactions between transcriptionally active proteins. Biotechniques. 42: 725-30. PMID 17612295 DOI: 10.2144/000112455 |
0.317 |
|
| 2007 |
Musso G, Zhang Z, Emili A. Retention of protein complex membership by ancient duplicated gene products in budding yeast. Trends in Genetics : Tig. 23: 266-9. PMID 17428571 DOI: 10.1016/J.Tig.2007.03.012 |
0.719 |
|
| 2007 |
Zhang Z, Pang AW, Gerstein M. Comparative analysis of genome tiling array data reveals many novel primate-specific functional RNAs in human. Bmc Evolutionary Biology. 7: S14. PMID 17288572 DOI: 10.1186/1471-2148-7-S1-S14 |
0.533 |
|
| 2007 |
Karro JE, Yan Y, Zheng D, Zhang Z, Carriero N, Cayting P, Harrrison P, Gerstein M. Pseudogene.org: a comprehensive database and comparison platform for pseudogene annotation. Nucleic Acids Research. 35: D55-60. PMID 17099229 DOI: 10.1093/Nar/Gkl851 |
0.496 |
|
| 2006 |
Gunewardena S, Zhang Z. Accounting for structural properties and nucleotide co-variations in the quantitative prediction of binding affinities of protein-DNA interactions. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 379-90. PMID 17094254 |
0.57 |
|
| 2006 |
Gunewardena S, Jeavons P, Zhang Z. Enhancing the prediction of transcription factor binding sites by incorporating structural properties and nucleotide covariations. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 13: 929-45. PMID 16761919 DOI: 10.1089/Cmb.2006.13.929 |
0.59 |
|
| 2006 |
Zhang Z, Carriero N, Zheng D, Karro J, Harrison PM, Gerstein M. PseudoPipe: an automated pseudogene identification pipeline. Bioinformatics (Oxford, England). 22: 1437-9. PMID 16574694 DOI: 10.1093/Bioinformatics/Btl116 |
0.545 |
|
| 2005 |
Zheng D, Zhang Z, Harrison PM, Karro J, Carriero N, Gerstein M. Integrated pseudogene annotation for human chromosome 22: evidence for transcription. Journal of Molecular Biology. 349: 27-45. PMID 15876366 DOI: 10.1016/J.Jmb.2005.02.072 |
0.557 |
|
| 2005 |
Harrison PM, Zheng D, Zhang Z, Carriero N, Gerstein M. Transcribed processed pseudogenes in the human genome: an intermediate form of expressed retrosequence lacking protein-coding ability. Nucleic Acids Research. 33: 2374-83. PMID 15860774 DOI: 10.1093/Nar/Gki531 |
0.571 |
|
| 2004 |
Zhang Z, Gerstein M. Large-scale analysis of pseudogenes in the human genome. Current Opinion in Genetics & Development. 14: 328-35. PMID 15261647 DOI: 10.1016/J.Gde.2004.06.003 |
0.54 |
|
| 2004 |
Zhang Z, Carriero N, Gerstein M. Comparative analysis of processed pseudogenes in the mouse and human genomes. Trends in Genetics : Tig. 20: 62-7. PMID 14746985 DOI: 10.1016/J.Tig.2003.12.005 |
0.537 |
|
| 2003 |
Zhang Z, Harrison PM, Liu Y, Gerstein M. Millions of years of evolution preserved: a comprehensive catalog of the processed pseudogenes in the human genome. Genome Research. 13: 2541-58. PMID 14656962 DOI: 10.1101/Gr.1429003 |
0.554 |
|
| 2003 |
Zhang Z, Gerstein M. Reconstructing genetic networks in yeast. Nature Biotechnology. 21: 1295-7. PMID 14595359 DOI: 10.1038/Nbt1103-1295 |
0.482 |
|
| 2003 |
Zhang Z, Gerstein M. Patterns of nucleotide substitution, insertion and deletion in the human genome inferred from pseudogenes. Nucleic Acids Research. 31: 5338-48. PMID 12954770 DOI: 10.1093/Nar/Gkg745 |
0.544 |
|
| 2003 |
Zhang Z, Gerstein M. The human genome has 49 cytochrome c pseudogenes, including a relic of a primordial gene that still functions in mouse. Gene. 312: 61-72. PMID 12909341 DOI: 10.1016/S0378-1119(03)00579-1 |
0.538 |
|
| 2003 |
Zhang Z, Gerstein M. Of mice and men: phylogenetic footprinting aids the discovery of regulatory elements. Journal of Biology. 2: 11. PMID 12814519 DOI: 10.1186/1475-4924-2-11 |
0.526 |
|
| 2003 |
Zhang Z, Gerstein M. Identification and characterization of over 100 mitochondrial ribosomal protein pseudogenes in the human genome. Genomics. 81: 468-80. PMID 12706105 DOI: 10.1016/S0888-7543(03)00004-1 |
0.555 |
|
| 2003 |
Harrison PM, Milburn D, Zhang Z, Bertone P, Gerstein M. Identification of pseudogenes in the Drosophila melanogaster genome. Nucleic Acids Research. 31: 1033-7. PMID 12560500 DOI: 10.1093/Nar/Gkg169 |
0.738 |
|
| 2002 |
Zhang Z, Harrison P, Gerstein M. Identification and analysis of over 2000 ribosomal protein pseudogenes in the human genome. Genome Research. 12: 1466-82. PMID 12368239 DOI: 10.1101/Gr.331902 |
0.573 |
|
| 2002 |
Luscombe NM, Qian J, Zhang Z, Johnson T, Gerstein M. The dominance of the population by a selected few: power-law behaviour applies to a wide variety of genomic properties. Genome Biology. 3: RESEARCH0040. PMID 12186647 DOI: 10.1186/Gb-2002-3-8-Research0040 |
0.521 |
|
| 2002 |
Balasubramanian S, Harrison P, Hegyi H, Bertone P, Luscombe N, Echols N, McGarvey P, Zhang Z, Gerstein M. SNPs on human chromosomes 21 and 22 -- analysis in terms of protein features and pseudogenes. Pharmacogenomics. 3: 393-402. PMID 12052146 DOI: 10.1517/14622416.3.3.393 |
0.687 |
|
| 2002 |
Echols N, Harrison P, Balasubramanian S, Luscombe NM, Bertone P, Zhang Z, Gerstein M. Comprehensive analysis of amino acid and nucleotide composition in eukaryotic genomes, comparing genes and pseudogenes. Nucleic Acids Research. 30: 2515-23. PMID 12034841 DOI: 10.1093/Nar/30.11.2515 |
0.713 |
|
| 2002 |
Liu Y, Luscombe NM, Alexandrov V, Bertone P, Harrison P, Zhang Z, Gerstein M. Structural genomics: a new era for pharmaceutical research. Genome Biology. 3: REPORTS4004. PMID 11864367 DOI: 10.1186/Gb-2002-3-2-Reports4004 |
0.739 |
|
| 2000 |
Zhang Z, Berry EA, Huang L, Kim S. Mitochondrial cytochrome bc1 complex. Sub-Cellular Biochemistry. 35: 541-580. DOI: 10.1007/0-306-46828-X_16 |
0.497 |
|
| 1999 |
Berry EA, Huang LS, Zhang Z, Kim SH. Structure of the avian mitochondrial cytochrome bc1 complex Journal of Bioenergetics and Biomembranes. 31: 177-190. PMID 10591524 DOI: 10.1023/A:1005459426843 |
0.545 |
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