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Dan He, Ph.D. - Publications

Affiliations: 
2012 Computer Science 0201 University of California, Los Angeles, Los Angeles, CA 
Area:
bioinformatics; computational biology; machine learning
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29 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2017 He D, Wang Z, Parida L, Eskin E. IPED2: Inheritance Path based Pedigree Reconstruction Algorithm for Complicated Pedigrees. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 28368828 DOI: 10.1109/Tcbb.2017.2688439  0.607
2016 He D, Parida L. MUSE: A MULTI-LOCUS SAMPLING-BASED EPISTASIS ALGORITHM FOR QUANTITATIVE GENETIC TRAIT PREDICTION. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 22: 426-437. PMID 27896995  0.309
2016 He D, Parida L. Does encoding matter? A novel view on the quantitative genetic trait prediction problem. Bmc Bioinformatics. 17: 272. PMID 27454886 DOI: 10.1186/S12859-016-1127-1  0.365
2016 He D, Kuhn D, Parida L. Novel applications of multitask learning and multiple output regression to multiple genetic trait prediction. Bioinformatics (Oxford, England). 32: i37-i43. PMID 27307640 DOI: 10.1093/Bioinformatics/Btw249  0.355
2016 He D, Rish I, Haws D, Parida L. MINT: Mutual Information Based Transductive Feature Selection for Genetic Trait Prediction. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 13: 578-583. PMID 27295642 DOI: 10.1109/Tcbb.2015.2448071  0.392
2016 Sul JH, Bilow M, Yang WY, Kostem E, Furlotte N, He D, Eskin E. Accounting for Population Structure in Gene-by-Environment Interactions in Genome-Wide Association Studies Using Mixed Models. Plos Genetics. 12: e1005849. PMID 26943367 DOI: 10.1371/Journal.Pgen.1005849  0.673
2016 Yang W, Liu H, Li Y, He D. Interaction mechanism of Ni(NO3)2·6H2O and P123 in preparing highly-dispersed Ni/SBA-15 catalytic materials Microporous and Mesoporous Materials. 228: 174-181. DOI: 10.1016/j.micromeso.2016.03.044  0.383
2015 Haws DC, Rish I, Teyssedre S, He D, Lozano AC, Kambadur P, Karaman Z, Parida L. Variable-Selection Emerges on Top in Empirical Comparison of Whole-Genome Complex-Trait Prediction Methods. Plos One. 10: e0138903. PMID 26439851 DOI: 10.1371/Journal.Pone.0138903  0.367
2015 He D, Wang Z, Parida L. Data-driven encoding for quantitative genetic trait prediction. Bmc Bioinformatics. 16: S10. PMID 25707435 DOI: 10.1186/1471-2105-16-S1-S10  0.318
2015 He D, Parida L. SAME: A sampling-based multi-locus epistasis algorithm for quantitative genetic trait prediction Bcb 2015 - 6th Acm Conference On Bioinformatics, Computational Biology, and Health Informatics. 286-295. DOI: 10.1145/2808719.2808749  0.301
2014 He D, Eskin E. IPED2X: a robust pedigree reconstruction algorithm for complicated pedigrees. Journal of Bioinformatics and Computational Biology. 12: 1442007. PMID 25553812 DOI: 10.1142/S0219720014420074  0.579
2014 He D, Furlotte NA, Hormozdiari F, Joo JW, Wadia A, Ostrovsky R, Sahai A, Eskin E. Identifying genetic relatives without compromising privacy. Genome Research. 24: 664-72. PMID 24614977 DOI: 10.1101/Gr.153346.112  0.738
2014 He D, Parker DS. SemInf: a burst-based semantic influence model for biomedical topic influence. Ieee Journal of Biomedical and Health Informatics. 18: 508-14. PMID 24235257 DOI: 10.1109/Jbhi.2013.2285875  0.314
2014 He D, Wang Z, Parida L, Eskin E. IPED2: Inheritance path based pedigree reconstruction algorithm for complicated pedigrees Acm Bcb 2014 - 5th Acm Conference On Bioinformatics, Computational Biology, and Health Informatics. 202-210. DOI: 10.1145/2649387.2649438  0.567
2013 He D, Wang Z, Han B, Parida L, Eskin E. IPED: inheritance path-based pedigree reconstruction algorithm using genotype data. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 20: 780-91. PMID 24093229 DOI: 10.1089/Cmb.2013.0080  0.699
2013 Yang WY, Hormozdiari F, Wang Z, He D, Pasaniuc B, Eskin E. Leveraging reads that span multiple single nucleotide polymorphisms for haplotype inference from sequencing data. Bioinformatics (Oxford, England). 29: 2245-52. PMID 23825370 DOI: 10.1093/Bioinformatics/Btt386  0.694
2013 He D. IBD-Groupon: an efficient method for detecting group-wise identity-by-descent regions simultaneously in multiple individuals based on pairwise IBD relationships. Bioinformatics (Oxford, England). 29: i162-70. PMID 23812980 DOI: 10.1093/Bioinformatics/Btt237  0.347
2013 He D, Han B, Eskin E. Hap-seq: an optimal algorithm for haplotype phasing with imputation using sequencing data. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 20: 80-92. PMID 23383995 DOI: 10.1089/Cmb.2012.0091  0.717
2013 He D, Eskin E. Hap-seqX: expedite algorithm for haplotype phasing with imputation using sequence data. Gene. 518: 2-6. PMID 23269365 DOI: 10.1016/J.Gene.2012.11.093  0.603
2013 He D, Eskin E. IPEDX: An exact algorithm for pedigree reconstruction using genotype data Proceedings - 2013 Ieee International Conference On Bioinformatics and Biomedicine, Ieee Bibm 2013. 517-520. DOI: 10.1109/BIBM.2013.6732549  0.549
2013 He D, Wang Z, Han B, Parida L, Eskin E. IPED: Inheritance path based pedigree reconstruction algorithm using genotype data Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 7821: 75-87. DOI: 10.1007/978-3-642-37195-0_7  0.682
2011 He D, Zaitlen N, Pasaniuc B, Eskin E, Halperin E. Genotyping common and rare variation using overlapping pool sequencing. Bmc Bioinformatics. 12: S2. PMID 21989232 DOI: 10.1186/1471-2105-12-S6-S2  0.702
2011 He D, Hormozdiari F, Furlotte N, Eskin E. Efficient algorithms for tandem copy number variation reconstruction in repeat-rich regions. Bioinformatics (Oxford, England). 27: 1513-20. PMID 21505028 DOI: 10.1093/Bioinformatics/Btr169  0.743
2011 Sul JH, Han B, He D, Eskin E. An optimal weighted aggregated association test for identification of rare variants involved in common diseases. Genetics. 188: 181-8. PMID 21368279 DOI: 10.1534/Genetics.110.125070  0.742
2011 He D, Kunwar P, Eskin E, Horton H, Gilbert P, Hertz T. Using HLA binding prediction algorithms for epitope mapping in HIV vaccine clinical trials 2011 Acm Conference On Bioinformatics, Computational Biology and Biomedicine, Bcb 2011. 594-601. DOI: 10.1145/2147805.2147907  0.427
2010 He D, Furlotte N, Eskin E. Detection and reconstruction of tandemly organized de novo copy number variations. Bmc Bioinformatics. 11: S12. PMID 21172047 DOI: 10.1186/1471-2105-11-S11-S12  0.736
2010 He D, Choi A, Pipatsrisawat K, Darwiche A, Eskin E. Optimal algorithms for haplotype assembly from whole-genome sequence data. Bioinformatics (Oxford, England). 26: i183-90. PMID 20529904 DOI: 10.1093/Bioinformatics/Btq215  0.607
2010 He D, Eskin E. Effective algorithms for fusion gene detection Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 6293: 312-324. DOI: 10.1007/978-3-642-15294-8_26  0.478
2005 He D, Arslan AN. A space-efficient algorithm for the constrained pairwise sequence alignment problem. Genome Informatics. International Conference On Genome Informatics. 16: 237-46. PMID 16901106 DOI: 10.11234/Gi1990.16.2_237  0.333
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