David L. Kirchman - Publications

Affiliations: 
Marine Studies University of Delaware, Newark, DE, United States 
Area:
Ecology, Oceanography, Microbiology

173 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Kirchman DL. Editorial: Metagenomics in Limnology and Oceanography Limnology and Oceanography. 65. DOI: 10.1002/Lno.11398  0.331
2019 Zhang Y, Gao Y, Kirchman D, Cottrell M, Chen R, Wang K, Ouyang Z, Xu Y, Chen B, Yin K, Cai W. Biological regulation of pH during intensive growth of phytoplankton in two eutrophic estuarine waters Marine Ecology Progress Series. 609: 87-99. DOI: 10.3354/Meps12836  0.315
2018 Osterholz H, Kirchman DL, Niggemann J, Dittmar T. Diversity of bacterial communities and dissolved organic matter in a temperate estuary. Fems Microbiology Ecology. PMID 29912327 DOI: 10.1093/Femsec/Fiy119  0.515
2018 Kirchman DL. Microbial proteins for organic material degradation in the deep ocean. Proceedings of the National Academy of Sciences of the United States of America. 115: 445-447. PMID 29288216 DOI: 10.1073/Pnas.1720765115  0.464
2017 Kirchman DL. Marine microbial ecology: Life after volcanic destruction. Nature Ecology & Evolution. 1: 157. PMID 28812645 DOI: 10.1038/S41559-017-0157  0.372
2017 Joesoef A, Kirchman DL, Sommerfield CK, Cai W. Seasonal variability of the inorganic carbon system in a large coastal plain estuary Biogeosciences. 14: 4949-4963. DOI: 10.5194/Bg-14-4949-2017  0.399
2017 Kirchman D, Cottrel M, DiTullio G. Shaping of bacterial community composition and diversity by phytoplankton and salinity in the Delaware Estuary, USA Aquatic Microbial Ecology. 78: 93-106. DOI: 10.3354/Ame01805  0.454
2016 Cottrell MT, Kirchman DL. Transcriptional control in marine copiotrophic and oligotrophic bacteria with streamlined genomes. Applied and Environmental Microbiology. PMID 27474718 DOI: 10.1128/Aem.01299-16  0.35
2016 Garcia-Chaves MC, Cottrell MT, Kirchman DL, Ruiz-González C, Del Giorgio PA. Single-cell activity of freshwater aerobic anoxygenic phototrophic bacteria and their contribution to biomass production. The Isme Journal. PMID 26771928 DOI: 10.1038/Ismej.2015.242  0.461
2016 Kirchman DL. Growth Rates of Microbes in the Oceans. Annual Review of Marine Science. 8: 285-309. PMID 26195108 DOI: 10.1146/Annurev-Marine-122414-033938  0.402
2016 Osterholz H, Kirchman DL, Niggemann J, Dittmar T. Environmental Drivers of Dissolved Organic Matter Molecular Composition in the Delaware Estuary Frontiers in Earth Science. 4. DOI: 10.3389/Feart.2016.00095  0.382
2015 Lankiewicz TS, Cottrell MT, Kirchman DL. Growth rates and rRNA content of four marine bacteria in pure cultures and in the Delaware estuary. The Isme Journal. PMID 26394004 DOI: 10.1038/Ismej.2015.156  0.475
2015 Fauteux L, Cottrell MT, Kirchman DL, Borrego CM, Garcia-Chaves MC, Del Giorgio PA. Patterns in Abundance, Cell Size and Pigment Content of Aerobic Anoxygenic Phototrophic Bacteria along Environmental Gradients in Northern Lakes. Plos One. 10: e0124035. PMID 25927833 DOI: 10.1371/Journal.Pone.0124035  0.525
2015 Cottrell MT, Del Giorgio PA, Kirchman DL. Biogeography of globally distributed bacteria in temperate and boreal Québec lakes as revealed by tag pyrosequencing of 16S rRNA genes Aquatic Microbial Ecology. 76: 175-188. DOI: 10.3354/Ame01776  0.486
2015 Garcia-Chaves M, Cottrell M, Kirchman D, Derry A, Bogard M, del Giorgio P. Major contribution of both zooplankton and protists to the top-down regulation of freshwater aerobic anoxygenic phototrophic bacteria Aquatic Microbial Ecology. 76: 71-83. DOI: 10.3354/Ame01770  0.487
2014 Fernandes SO, Kirchman DL, Michotey VD, Bonin PC, LokaBharathi PA. Bacterial diversity in relatively pristine and anthropogenically-influenced mangrove ecosystems (Goa, India). Brazilian Journal of Microbiology : [Publication of the Brazilian Society For Microbiology]. 45: 1161-71. PMID 25763019 DOI: 10.1590/S1517-83822014000400006  0.502
2014 Stegman MR, Cottrell MT, Kirchman DL. Leucine incorporation by aerobic anoxygenic phototrophic bacteria in the Delaware estuary. The Isme Journal. 8: 2339-48. PMID 24824666 DOI: 10.1038/Ismej.2014.75  0.529
2014 Nikrad MP, Cottrell MT, Kirchman DL. Uptake of dissolved organic carbon by gammaproteobacterial subgroups in coastal waters of the West Antarctic Peninsula. Applied and Environmental Microbiology. 80: 3362-8. PMID 24657855 DOI: 10.1128/Aem.00121-14  0.826
2014 Nikrad MP, Cottrell MT, Kirchman DL. Growth activity of gammaproteobacterial subgroups in waters off the west Antarctic Peninsula in summer and fall. Environmental Microbiology. 16: 1513-23. PMID 24118807 DOI: 10.1111/1462-2920.12258  0.815
2014 Landa M, Cottrell MT, Kirchman DL, Kaiser K, Medeiros PM, Tremblay L, Batailler N, Caparros J, Catala P, Escoubeyrou K, Oriol L, Blain S, Obernosterer I. Phylogenetic and structural response of heterotrophic bacteria to dissolved organic matter of different chemical composition in a continuous culture study. Environmental Microbiology. 16: 1668-81. PMID 24020678 DOI: 10.1111/1462-2920.12242  0.521
2014 Jiao N, Robinson C, Azam F, Thomas H, Baltar F, Dang H, Hardman-Mountford NJ, Johnson M, Kirchman DL, Koch BP, Legendre L, Li C, Liu J, Luo T, Luo YW, et al. Mechanisms of microbial carbon sequestration in the ocean – Future research directions Biogeosciences. 11: 5285-5306. DOI: 10.5194/Bg-11-5285-2014  0.401
2014 Kirchman DL, Hanson TE, Cottrell MT, Hamdan LJ. Metagenomic analysis of organic matter degradation in methane-rich Arctic Ocean sediments Limnology and Oceanography. 59: 548-559. DOI: 10.4319/Lo.2014.59.2.0548  0.431
2014 Lami R, Kirchman DL. Diurnal expression of SAR11 proteorhodopsin and 16S rRNA genes in coastal North Atlantic waters Aquatic Microbial Ecology. 73: 185-194. DOI: 10.3354/Ame01716  0.444
2014 Kirchman DL, Stegman MR, Nikrad MP, Cottrell MT. Abundance, size, and activity of aerobic anoxygenic phototrophic bacteria in coastal waters of the West Antarctic Peninsula Aquatic Microbial Ecology. 73: 41-49. DOI: 10.3354/Ame01709  0.833
2013 Kirchman DL, Hanson TE. Bioenergetics of photoheterotrophic bacteria in the oceans. Environmental Microbiology Reports. 5: 188-99. PMID 23584962 DOI: 10.1111/J.1758-2229.2012.00367.X  0.376
2013 Boeuf D, Cottrell MT, Kirchman DL, Lebaron P, Jeanthon C. Summer community structure of aerobic anoxygenic phototrophic bacteria in the western Arctic Ocean. Fems Microbiology Ecology. 85: 417-32. PMID 23560623 DOI: 10.1111/1574-6941.12130  0.543
2013 Kirchman DL. Microbial oceanography: Killers of the winners. Nature. 494: 320-1. PMID 23407493 DOI: 10.1038/Nature11951  0.444
2013 Lami R, Jones LC, Cottrell MT, Lafferty BJ, Ginder-Vogel M, Sparks DL, Kirchman DL. Arsenite modifies structure of soil microbial communities and arsenite oxidization potential. Fems Microbiology Ecology. 84: 270-9. PMID 23252611 DOI: 10.1111/1574-6941.12061  0.36
2013 Campbell BJ, Kirchman DL. Bacterial diversity, community structure and potential growth rates along an estuarine salinity gradient. The Isme Journal. 7: 210-20. PMID 22895159 DOI: 10.1038/Ismej.2012.93  0.522
2013 Landa M, Cottrell MT, Kirchman DL, Blain S, Obernosterer I. Changes in bacterial diversity in response to dissolved organic matter supply in a continuous culture experiment Aquatic Microbial Ecology. 69: 157-168. DOI: 10.3354/Ame01632  0.525
2012 Kirchman DL. Marine archaea take a short cut in the nitrogen cycle. Proceedings of the National Academy of Sciences of the United States of America. 109: 17732-3. PMID 23074249 DOI: 10.1073/Pnas.1215654109  0.321
2012 Ghiglione JF, Galand PE, Pommier T, Pedrós-Alió C, Maas EW, Bakker K, Bertilson S, Kirchman DL, Lovejoy C, Yager PL, Murray AE. Pole-to-pole biogeography of surface and deep marine bacterial communities Proceedings of the National Academy of Sciences of the United States of America. 109: 17633-17638. PMID 23045668 DOI: 10.1073/Pnas.1208160109  0.469
2012 Nikrad MP, Cottrell MT, Kirchman DL. Abundance and single-cell activity of heterotrophic bacterial groups in the western Arctic Ocean in summer and winter. Applied and Environmental Microbiology. 78: 2402-9. PMID 22286998 DOI: 10.1128/Aem.07130-11  0.831
2012 Galand PE, Bourrain M, De Maistre E, Catala P, Desdevises Y, Elifantz H, Kirchman DL, Lebaron P. Phylogenetic and functional diversity of Bacteria and Archaea in a unique stratified lagoon, the Clipperton atoll (N Pacific). Fems Microbiology Ecology. 79: 203-17. PMID 22029483 DOI: 10.1111/J.1574-6941.2011.01209.X  0.783
2012 Cottrell MT, Kirchman DL. Virus genes in Arctic marine bacteria identified by metagenomic analysis Aquatic Microbial Ecology. 66: 107-116. DOI: 10.3354/Ame01569  0.39
2011 Campbell BJ, Yu L, Heidelberg JF, Kirchman DL. Activity of abundant and rare bacteria in a coastal ocean. Proceedings of the National Academy of Sciences of the United States of America. 108: 12776-81. PMID 21768380 DOI: 10.1073/Pnas.1101405108  0.505
2011 Gonsalves MJ, Fernandes CE, Fernandes SO, Kirchman DL, Bharathi PA. Effects of composition of labile organic matter on biogenic production of methane in the coastal sediments of the Arabian Sea. Environmental Monitoring and Assessment. 182: 385-95. PMID 21318266 DOI: 10.1007/S10661-011-1883-3  0.364
2011 Christman GD, Cottrell MT, Popp BN, Gier E, Kirchman DL. Abundance, diversity, and activity of ammonia-oxidizing prokaryotes in the coastal Arctic ocean in summer and winter. Applied and Environmental Microbiology. 77: 2026-34. PMID 21239542 DOI: 10.1128/Aem.01907-10  0.373
2011 Twing KI, Kirchman DL, Campbell BJ. Temporal study of Helicobacter pylori presence in coastal freshwater, estuary and marine waters. Water Research. 45: 1897-905. PMID 21193216 DOI: 10.1016/J.Watres.2010.12.013  0.352
2011 Lamy D, Jeanthon C, Cottrell MT, Kirchman DL, Van Wambeke F, Ras J, Dahan O, Pujo-Pay M, Oriol L, Bariat L, Catala P, Cornet-Barthaux V, Lebaron P. Ecology of aerobic anoxygenic phototrophic bacteria along an oligotrophic gradient in the Mediterranean Sea Biogeosciences. 8: 973-985. DOI: 10.5194/Bg-8-973-2011  0.534
2011 Michelou VK, Lomas MW, Kirchman DL. Phosphate and adenosine-59-triphosphate uptake by cyanobacteria and heterotrophic bacteria in the Sargasso Sea Limnology and Oceanography. 56: 323-332. DOI: 10.4319/Lo.2011.56.1.0323  0.794
2011 Straza TRA, Kirchman DL. Single-cell response of bacterial groups to light and other environmental factors in the Delaware Bay, USA Aquatic Microbial Ecology. 62: 267-277. DOI: 10.3354/Ame01469  0.459
2011 Lamy D, De Carvalho-Maalouf P, Cottrell MT, Lami R, Catala P, Oriol L, Caparros J, Ras J, Kirchman DL, Lebaron P. Seasonal dynamics of aerobic anoxygenic phototrophs in a Mediterranean coastal lagoon Aquatic Microbial Ecology. 62: 153-163. DOI: 10.3354/Ame01467  0.496
2011 Jiao N, Herndl GJ, Hansell DA, Benner R, Kattner G, Wilhelm SW, Kirchman DL, Weinbauer MG, Luo T, Chen F, Azam F. The microbial carbon pump and the oceanic recalcitrant dissolved organic matter pool Nature Reviews Microbiology. 9: 555. DOI: 10.1038/Nrmicro2386-C5  0.362
2011 Lovejoy C, Galand PE, Kirchman DL. Picoplankton diversity in the Arctic Ocean and surrounding seas Marine Biodiversity. 41: 5-12. DOI: 10.1007/S12526-010-0062-Z  0.526
2010 Lehours AC, Cottrell MT, Dahan O, Kirchman DL, Jeanthon C. Summer distribution and diversity of aerobic anoxygenic phototrophic bacteria in the Mediterranean Sea in relation to environmental variables. Fems Microbiology Ecology. 74: 397-409. PMID 21039650 DOI: 10.1111/J.1574-6941.2010.00954.X  0.431
2010 Jiao N, Herndl GJ, Hansell DA, Benner R, Kattner G, Wilhelm SW, Kirchman DL, Weinbauer MG, Luo T, Chen F, Azam F. Microbial production of recalcitrant dissolved organic matter: long-term carbon storage in the global ocean. Nature Reviews. Microbiology. 8: 593-9. PMID 20601964 DOI: 10.1038/Nrmicro2386  0.383
2010 Cottrell MT, Ras J, Kirchman DL. Bacteriochlorophyll and community structure of aerobic anoxygenic phototrophic bacteria in a particle-rich estuary. The Isme Journal. 4: 945-54. PMID 20182527 DOI: 10.1038/Ismej.2010.13  0.484
2010 Kirchman DL, Cottrell MT, Lovejoy C. The structure of bacterial communities in the western Arctic Ocean as revealed by pyrosequencing of 16S rRNA genes. Environmental Microbiology. 12: 1132-43. PMID 20132284 DOI: 10.1111/J.1462-2920.2010.02154.X  0.542
2009 Galand PE, Casamayor EO, Kirchman DL, Lovejoy C. Ecology of the rare microbial biosphere of the Arctic Ocean. Proceedings of the National Academy of Sciences of the United States of America. 106: 22427-32. PMID 20018741 DOI: 10.1073/Pnas.0908284106  0.476
2009 Angly FE, Willner D, Prieto-Davó A, Edwards RA, Schmieder R, Vega-Thurber R, Antonopoulos DA, Barott K, Cottrell MT, Desnues C, Dinsdale EA, Furlan M, Haynes M, Henn MR, Hu Y, ... Kirchman DL, et al. The GAAS metagenomic tool and its estimations of viral and microbial average genome size in four major biomes. Plos Computational Biology. 5: e1000593. PMID 20011103 DOI: 10.1371/Journal.Pcbi.1000593  0.38
2009 Lami R, Cottrell MT, Campbell BJ, Kirchman DL. Light-dependent growth and proteorhodopsin expression by Flavobacteria and SAR11 in experiments with Delaware coastal waters. Environmental Microbiology. 11: 3201-9. PMID 19691506 DOI: 10.1111/J.1462-2920.2009.02028.X  0.378
2009 Cottrell MT, Kirchman DL. Photoheterotrophic microbes in the Arctic Ocean in summer and winter. Applied and Environmental Microbiology. 75: 4958-66. PMID 19502441 DOI: 10.1128/Aem.00117-09  0.553
2009 Kirchman DL, Morán XA, Ducklow H. Microbial growth in the polar oceans - role of temperature and potential impact of climate change. Nature Reviews. Microbiology. 7: 451-9. PMID 19421189 DOI: 10.1038/Nrmicro2115  0.445
2009 Straza TR, Cottrell MT, Ducklow HW, Kirchman DL. Geographic and phylogenetic variation in bacterial biovolume as revealed by protein and nucleic acid staining. Applied and Environmental Microbiology. 75: 4028-34. PMID 19376906 DOI: 10.1128/Aem.00183-09  0.782
2009 Galand PE, Casamayor EO, Kirchman DL, Potvin M, Lovejoy C. Unique archaeal assemblages in the Arctic Ocean unveiled by massively parallel tag sequencing. The Isme Journal. 3: 860-9. PMID 19322244 DOI: 10.1038/Ismej.2009.23  0.471
2009 Campbell BJ, Yu L, Straza TRA, Kirchman DL. Temporal changes in bacterial rRNA and rRNA genes in Delaware (USA) coastal waters Aquatic Microbial Ecology. 57: 123-135. DOI: 10.3354/Ame01335  0.503
2009 Kirchman DL, Hill V, Cottrell MT, Gradinger R, Malmstrom RR, Parker A. Standing stocks, production, and respiration of phytoplankton and heterotrophic bacteria in the western Arctic Ocean Deep-Sea Research Part Ii: Topical Studies in Oceanography. 56: 1237-1248. DOI: 10.1016/J.Dsr2.2008.10.018  0.7
2009 Kirchman DL. Mysteries of metagenomics revealed Limnology and Oceanography Bulletin. 18: 2-6. DOI: 10.1002/Lob.20091811  0.359
2008 Kirchman DL. New light on an important microbe in the ocean. Proceedings of the National Academy of Sciences of the United States of America. 105: 8487-8. PMID 18559849 DOI: 10.1073/Pnas.0804196105  0.333
2008 Waidner LA, Kirchman DL. Diversity and distribution of ecotypes of the aerobic anoxygenic phototrophy gene pufM in the Delaware estuary. Applied and Environmental Microbiology. 74: 4012-21. PMID 18469118 DOI: 10.1128/Aem.02324-07  0.8
2008 Campbell BJ, Waidner LA, Cottrell MT, Kirchman DL. Abundant proteorhodopsin genes in the North Atlantic Ocean. Environmental Microbiology. 10: 99-109. PMID 18211270 DOI: 10.1111/J.1462-2920.2007.01436.X  0.803
2008 Elifantz H, Waidner LA, Michelou VK, Cottrell MT, Kirchman DL. Diversity and abundance of glycosyl hydrolase family 5 in the North Atlantic Ocean. Fems Microbiology Ecology. 63: 316-27. PMID 18194344 DOI: 10.1111/J.1574-6941.2007.00429.X  0.778
2008 Rowe JM, Saxton MA, Cottrell MT, DeBruyn JM, Berg GM, Kirchman DL, Hutchins DA, Wilhelm SW. Constraints on viral production in the Sargasso Sea and North Atlantic Aquatic Microbial Ecology. 52: 233-244. DOI: 10.3354/Ame01231  0.37
2008 Höfle MG, Kirchman DL, Christen R, Brettar I. Molecular diversity of bacterioplankton: Link to a predictive biogeochemistry of pelagic ecosystems Aquatic Microbial Ecology. 53: 39-58. DOI: 10.3354/Ame01227  0.415
2008 Cottrell MT, Michelou VK, Nemcek N, DiTullio G, Kirchman DL. Carbon cycling by microbes influenced by light in the Northeast Atlantic Ocean Aquatic Microbial Ecology. 50: 239-250. DOI: 10.3354/Ame01173  0.816
2008 Kirchman DL. Microbial Ecology of the Oceans: Second Edition Microbial Ecology of the Oceans: Second Edition. 1-593. DOI: 10.1002/9780470281840  0.349
2007 Michelou VK, Cottrell MT, Kirchman DL. Light-stimulated bacterial production and amino acid assimilation by cyanobacteria and other microbes in the North Atlantic ocean. Applied and Environmental Microbiology. 73: 5539-46. PMID 17630296 DOI: 10.1128/Aem.00212-07  0.798
2007 Lami R, Cottrell MT, Ras J, Ulloa O, Obernosterer I, Claustre H, Kirchman DL, Lebaron P. High abundances of aerobic anoxygenic photosynthetic bacteria in the South Pacific Ocean. Applied and Environmental Microbiology. 73: 4198-205. PMID 17496136 DOI: 10.1128/Aem.02652-06  0.567
2007 Waidner LA, Kirchman DL. Aerobic anoxygenic phototrophic bacteria attached to particles in turbid waters of the Delaware and Chesapeake estuaries. Applied and Environmental Microbiology. 73: 3936-44. PMID 17468276 DOI: 10.1128/Aem.00592-07  0.79
2007 Jones PR, Cottrell MT, Kirchman DL, Dexter SC. Bacterial community structure of biofilms on artificial surfaces in an estuary. Microbial Ecology. 53: 153-62. PMID 17186146 DOI: 10.1007/S00248-006-9154-5  0.477
2007 Kirchman DL, Elifantz H, Dittel AI, Malmstrom RR, Cottrell MT. Standing stocks and activity of Archaea and Bacteria in the western Arctic Ocean Limnology and Oceanography. 52: 495-507. DOI: 10.4319/Lo.2007.52.2.0495  0.843
2007 Malmstrom RR, Straza TRA, Cottrell MT, Kirchman DL. Diversity, abundance, and biomass production of bacterial groups in the western Arctic Ocean Aquatic Microbial Ecology. 47: 45-55. DOI: 10.3354/Ame047045  0.736
2007 Elifantz H, Dittel AI, Cottrell MT, Kirchman DL. Dissolved organic matter assimilation by heterotrophic bacterial groups in the western Arctic Ocean Aquatic Microbial Ecology. 50: 39-49. DOI: 10.3354/Ame01145  0.82
2006 Castle DM, Montgomery MT, Kirchman DL. Effects of naphthalene on microbial community composition in the Delaware estuary. Fems Microbiology Ecology. 56: 55-63. PMID 16542405 DOI: 10.1111/J.1574-6941.2006.00062.X  0.8
2006 Cottrell MT, Mannino A, Kirchman DL. Aerobic anoxygenic phototrophic bacteria in the Mid-Atlantic Bight and the North Pacific Gyre. Applied and Environmental Microbiology. 72: 557-64. PMID 16391092 DOI: 10.1128/Aem.72.1.557-564.2006  0.556
2006 Zhang Y, Jiao N, Cottrell MT, Kirchman DL. Contribution of major bacterial groups to bacterial biomass production along a salinity gradient in the South China Sea Aquatic Microbial Ecology. 43: 233-241. DOI: 10.3354/Ame043233  0.52
2006 Zhang Y, Jiao N, Cottrell M, Kirchman D. Contribution of major bacterial groups to bacterial biomass production along a salinity gradient in the South China Sea Aquatic Microbial Ecology. 43: 233-241. DOI: 10.3354/ame043233  0.382
2006 Harvey HR, Dyda RY, Kirchman DL. Impact of DOM composition on bacterial lipids and community structure in estuaries Aquatic Microbial Ecology. 42: 105-117. DOI: 10.3354/Ame042105  0.492
2006 Cottrell MT, Malmstrom RR, Hill V, Parker AE, Kirchman DL. The metabolic balance between autotrophy and heterotrophy in the western Arctic Ocean Deep-Sea Research Part I: Oceanographic Research Papers. 53: 1831-1844. DOI: 10.1016/j.dsr.2006.08.010  0.656
2005 Cottrell MT, Yu L, Kirchman DL. Sequence and expression analyses of Cytophaga-like hydrolases in a Western arctic metagenomic library and the Sargasso Sea. Applied and Environmental Microbiology. 71: 8506-13. PMID 16332841 DOI: 10.1128/Aem.71.12.8506-8513.2005  0.418
2005 Elifantz H, Malmstrom RR, Cottrell MT, Kirchman DL. Assimilation of polysaccharides and glucose by major bacterial groups in the Delaware Estuary. Applied and Environmental Microbiology. 71: 7799-805. PMID 16332754 DOI: 10.1128/Aem.71.12.7799-7805.2005  0.809
2005 Waidner LA, Kirchman DL. Aerobic anoxygenic photosynthesis genes and operons in uncultured bacteria in the Delaware River. Environmental Microbiology. 7: 1896-908. PMID 16309388 DOI: 10.1111/J.1462-2920.2005.00883.X  0.771
2005 Cottrell MT, Waidner LA, Yu L, Kirchman DL. Bacterial diversity of metagenomic and PCR libraries from the Delaware River. Environmental Microbiology. 7: 1883-95. PMID 16309387 DOI: 10.1111/J.1462-2920.2005.00762.X  0.805
2005 Malmstrom RR, Cottrell MT, Elifantz H, Kirchman DL. Biomass production and assimilation of dissolved organic matter by SAR11 bacteria in the Northwest Atlantic Ocean. Applied and Environmental Microbiology. 71: 2979-86. PMID 15932993 DOI: 10.1128/Aem.71.6.2979-2986.2005  0.836
2005 Malmstrom RR, Kiene RP, Vila M, Kirchman DL. Dimethylsulfoniopropionate (DMSP) assimilation by Synechococcus in the Gulf of Mexico and northwest Atlantic Ocean Limnology and Oceanography. 50: 1924-1931. DOI: 10.4319/Lo.2005.50.6.1924  0.717
2005 Kirchman DL, Dittel AI, Malmstrom RR, Cottrell MT. Biogeography of major bacterial groups in the Delaware Estuary Limnology and Oceanography. 50: 1697-1706. DOI: 10.4319/Lo.2005.50.5.1697  0.74
2005 Helton RR, Cottrell MT, Kirchman DL, Wommack KE. Evaluation of incubation-based methods for estimating virioplankton production in estuaries Aquatic Microbial Ecology. 41: 209-219. DOI: 10.3354/Ame041209  0.351
2005 Hare CE, Demir E, Coyne KJ, Craig Cary S, Kirchman DL, Hutchins DA. A bacterium that inhibits the growth of Pfiesteria piscicida and other dinoflagellates Harmful Algae. 4: 221-234. DOI: 10.1016/J.Hal.2004.03.001  0.38
2005 Kirchman DL, Malmstrom RR, Cottrell MT. Control of bacterial growth by temperature and organic matter in the Western Arctic Deep-Sea Research Part Ii: Topical Studies in Oceanography. 52: 3386-3395. DOI: 10.1016/J.Dsr2.2005.09.005  0.686
2004 Malmstrom RR, Kiene RP, Cottrell MT, Kirchman DL. Contribution of SAR11 bacteria to dissolved dimethylsulfoniopropionate and amino acid uptake in the North Atlantic ocean. Applied and Environmental Microbiology. 70: 4129-35. PMID 15240292 DOI: 10.1128/Aem.70.7.4129-4135.2004  0.742
2004 Castle D, Kirchman DL. Composition of estuarine bacterial communities assessed by denaturing gradient gel electrophoresis and fluorescence in situ hybridization Limnology and Oceanography: Methods. 2: 303-314. DOI: 10.4319/Lom.2004.2.303  0.809
2004 Yokokawa T, Nagata T, Cottrell MT, Kirchman DL. Growth rate of the major phylogenetic bacterial groups in the Delaware estuary Limnology and Oceanography. 49: 1620-1629. DOI: 10.4319/Lo.2004.49.5.1620  0.474
2004 Malmstrom RR, Kiene RP, Kirchman DL. Identification and enumeration of bacteria assimilating dimethylsulfoniopropionate (DMSP) in the North Atlantic and Gulf of Mexico Limnology and Oceanography. 49: 597-606. DOI: 10.4319/Lo.2004.49.2.0597  0.755
2004 Preen K, Kirchman DL. Microbial respiration and production in the Delaware Estuary Aquatic Microbial Ecology. 37: 109-119. DOI: 10.3354/Ame037109  0.421
2004 Kirchman DL, Dittel AI, Findlay SEG, Fischer D. Changes in bacterial activity and community structure in response to dissolved organic matter in the Hudson River, New York Aquatic Microbial Ecology. 35: 243-257. DOI: 10.3354/Ame035243  0.505
2004 Cottrell MT, Kirchman DL. Single-cell analysis of bacterial growth, cell size, and community structure in the Delaware estuary Aquatic Microbial Ecology. 34: 139-149. DOI: 10.3354/Ame034139  0.523
2004 Verdugo P, Alldredge AL, Azam F, Kirchman DL, Passow U, Santschi PH. The oceanic gel phase: A bridge in the DOM-POM continuum Marine Chemistry. 92: 67-85. DOI: 10.1016/J.Marchem.2004.06.017  0.382
2003 Kirchman DL, Yu L, Cottrell MT. Diversity and abundance of uncultured cytophaga-like bacteria in the Delaware estuary. Applied and Environmental Microbiology. 69: 6587-96. PMID 14602617 DOI: 10.1128/Aem.69.11.6587-6596.2003  0.409
2003 Nagata T, Meon B, Kirchman DL. Microbial degradation of peptidoglycan in seawater Limnology and Oceanography. 48: 745-754. DOI: 10.4319/Lo.2003.48.2.0745  0.383
2003 Kirchman DL, Hoffman KA, Weaver R, Hutchins DA. Regulation of growth and energetics of a marine bacterium by nitrogen source and iron availability Marine Ecology Progress Series. 250: 291-296. DOI: 10.3354/Meps250291  0.334
2003 Kirchman DL, Borch NH. Fluxes of dissolved combined neutral sugars (polysaccharides) in the Delaware estuary Estuaries. 26: 894-904. DOI: 10.1007/Bf02803348  0.46
2003 Cottrell MT, Kirchman DL. Contribution of major bacterial groups to bacterial biomass production (thymidine and leucine incorporation) in the Delaware estuary Limnology and Oceanography. 48: 168-178.  0.352
2002 Kirchman DL. The ecology of Cytophaga-Flavobacteria in aquatic environments. Fems Microbiology Ecology. 39: 91-100. PMID 19709188 DOI: 10.1111/J.1574-6941.2002.Tb00910.X  0.533
2002 Ducklow HW, Kirchman DL, Anderson TR. The magnitude of spring bacterial production in the North Atlantic Ocean Limnology and Oceanography. 47: 1684-1693. DOI: 10.4319/Lo.2002.47.6.1684  0.382
2002 Landry MR, Kirchman DL. Microbial community structure and variability in the tropical Pacific Deep-Sea Research Part Ii: Topical Studies in Oceanography. 49: 2669-2693. DOI: 10.1016/S0967-0645(02)00053-X  0.476
2001 Kirchman DL. Bacteria in biofilms are living an unnatural life. Nature. 413: 772. PMID 11677575 DOI: 10.1038/35101772  0.35
2001 Kirchman DL, Yu L, Fuchs BM, Amann R. Structure of bacterial communities in aquatic systems as revealed by filter PCR Aquatic Microbial Ecology. 26: 13-22. DOI: 10.3354/Ame026013  0.369
2001 Ducklow H, Carlson C, Church M, Kirchman D, Smith D, Steward G. The seasonal development of the bacterioplankton bloom in the Ross Sea, Antarctica, 1994-1997 Deep-Sea Research Part Ii: Topical Studies in Oceanography. 48: 4199-4221. DOI: 10.1016/S0967-0645(01)00086-8  0.535
2001 Kirchman DL, Meon B, Ducklow HW, Carlson CA, Hansell DA, Steward GF. Glucose fluxes and concentrations of dissolved combined neutral sugars (polysaccharides) in the Ross Sea and Polar Front Zone, Antarctica Deep-Sea Research Part Ii: Topical Studies in Oceanography. 48: 4179-4197. DOI: 10.1016/S0967-0645(01)00085-6  0.451
2001 Kirchman D. Measuring bacterial biomass production and growth rates from leucine incorporation in natural aquatic environments Methods in Microbiology. 30: 227-237. DOI: 10.1016/S0580-9517(01)30047-8  0.396
2001 Meon B, Kirchman DL. Dynamics and molecular composition of dissolved organic material during experimental phytoplankton blooms Marine Chemistry. 75: 185-199. DOI: 10.1016/S0304-4203(01)00036-6  0.387
2000 Cottrell MT, Kirchman DL. Community composition of marine bacterioplankton determined by 16S rRNA gene clone libraries and fluorescence in situ hybridization Applied and Environmental Microbiology. 66: 5116-5122. PMID 11097877 DOI: 10.1128/Aem.66.12.5116-5122.2000  0.476
2000 Cottrell MT, Kirchman DL. Natural assemblages of marine proteobacteria and members of the Cytophaga-flavobacter cluster consuming low- and high-molecular-weight dissolved organic matter Applied and Environmental Microbiology. 66: 1692-1697. PMID 10742262 DOI: 10.1128/Aem.66.4.1692-1697.2000  0.527
2000 Cottrell MT, Wood DN, Yu L, Kirchman DL. Selected chitinase genes in cultured and uncultured marine bacteria in the α- and γ-subclasses of the proteobacteria Applied and Environmental Microbiology. 66: 1195-1201. PMID 10698791 DOI: 10.1128/Aem.66.3.1195-1201.2000  0.392
2000 Kirchman DL, Meon B, Cottrell MT, Hutchins DA, Weeks D, Bruland KW. Carbon versus iron limitation of bacterial growth in the California upwelling regime Limnology and Oceanography. 45: 1681-1688. DOI: 10.4319/Lo.2000.45.8.1681  0.365
2000 Ducklow HW, Dickson ML, Kirchman DL, Steward G, Orchardo J, Marra J, Azam F. Constraining bacterial production, conversion efficiency and respiration in the Ross Sea, Antarctica, January - February, 1997 Deep-Sea Research Part Ii: Topical Studies in Oceanography. 47: 3227-3247. DOI: 10.1016/S0967-0645(00)00066-7  0.457
2000 Hedges JI, Eglinton G, Hatcher PG, Kirchman DL, Arnosti C, Derenne S, Evershed RP, Kögel-Knabner I, De Leeuw JW, Littke R, Michaelis W, Rullkötter J. The molecularly-uncharacterized component of nonliving organic matter in natural environments Organic Geochemistry. 31: 945-958. DOI: 10.1016/S0146-6380(00)00096-6  0.345
1999 Cottrell MT, Moore JA, Kirchman DL. Chitinases from uncultured marine microorganisms Applied and Environmental Microbiology. 65: 2553-2557. PMID 10347042 DOI: 10.1128/Aem.65.6.2553-2557.1999  0.431
1999 Kirchman DL. Bacterial biogeochemistry: The ecophysiology of mineral cycling Limnology and Oceanography. 44: 233-234. DOI: 10.4319/Lo.1999.44.1.0233  0.391
1999 Keil RG, Kirchman DL. Utilization of dissolved protein and amino acids in the northern Sargasso Sea Aquatic Microbial Ecology. 18: 293-300. DOI: 10.3354/Ame018293  0.444
1999 Kirchman DL, White J. Hydrolysis and mineralization of chitin in the Delaware Estuary Aquatic Microbial Ecology. 18: 187-196. DOI: 10.3354/Ame018187  0.403
1999 Borch NH, Kirchman DL. Protection of protein from bacterial degradation by submicron particles Aquatic Microbial Ecology. 16: 265-272. DOI: 10.3354/Ame016265  0.344
1999 Kirchman DL. Phytoplankton death in the sea Nature. 398: 293-294. DOI: 10.1038/18570  0.384
1998 Nagata T, Fukuda R, Koike I, Kogure K, Kirchman DL. Degradation by bacteria of membrane and soluble protein in seawater Aquatic Microbial Ecology. 14: 29-37. DOI: 10.3354/Ame014029  0.307
1998 Kirchman DL, Wheeler PA. Uptake of ammonium and nitrate by heterotrophic bacteria and phytoplankton in the sub-Arctic Pacific Deep-Sea Research Part I: Oceanographic Research Papers. 45: 347-365. DOI: 10.1016/S0967-0637(97)00075-7  0.372
1997 Kirchman DL. Microbial breathing lessons Nature. 385: 121. DOI: 10.1038/385121A0  0.409
1997 Archer D, Peltzer ET, Kirchman DL. A timescale for dissolved organic carbon production in equatorial Pacific surface waters Global Biogeochemical Cycles. 11: 435-452. DOI: 10.1029/97Gb01196  0.372
1997 Rich J, Gosselin M, Sherr E, Sherr B, Kirchman DL. High bacterial production, uptake and concentrations of dissolved organic matter in the Central Arctic Ocean Deep-Sea Research Part Ii: Topical Studies in Oceanography. 44: 1645-1663. DOI: 10.1016/S0967-0645(97)00058-1  0.508
1997 Archer D, Aiken J, Balch W, Barber D, Dunne J, Flament P, Gardner W, Garside C, Goyet C, Johnson E, Kirchman D, Mcphaden M, Newton J, Peltzer E, Welling L, et al. A meeting place of great ocean currents: shipboard observations of a convergent front at 2°N in the Pacific Deep Sea Research Part Ii: Topical Studies in Oceanography. 44: 1827-1849. DOI: 10.1016/S0967-0645(97)00031-3  0.388
1997 Borch NH, Kirchman DL. Concentration and composition of dissolved combined neutral sugars (polysaccharides) in seawater determined by HPLC-PAD Marine Chemistry. 57: 85-95. DOI: 10.1016/S0304-4203(97)00002-9  0.4
1997 Kirchman DL, Rich JH. Regulation of bacterial growth rates by dissolved organic carbon and temperature in the equatorial Pacific Ocean Microbial Ecology. 33: 11-20. DOI: 10.1007/S002489900003  0.463
1996 Rich JH, Ducklow HW, Kirchman DL. Concentrations and uptake of neutral monosaccharides along 140°W in the equatorial Pacific: Contribution of glucose to heterotrophic bacterial activity and the DOM flux Limnology and Oceanography. 41: 595-604. DOI: 10.4319/Lo.1996.41.4.0595  0.418
1996 Kirchman DL. Microbial ferrous wheel Nature. 383: 303-304. DOI: 10.1038/383303A0  0.416
1996 Wheeler PA, Gosselin M, Sherr E, Thibault D, Kirchman DL, Benner R, Whitledge TE. Active cycling of organic carbon in the central Arctic Ocean Nature. 380: 697-699. DOI: 10.1038/380697A0  0.381
1996 Ullman WJ, Kirchman DL, Welch SA, Vandevivere P. Laboratory evidence for microbially mediated silicate mineral dissolution in nature Chemical Geology. 132: 11-17. DOI: 10.1016/S0009-2541(96)00036-8  0.375
1995 Hoch MP, Kirchman DL. Ammonium uptake by heterotrophic bacteria in the Delaware estuary and adjacent coastal waters Limnology and Oceanography. 40: 886-897. DOI: 10.4319/Lo.1995.40.5.0886  0.489
1995 Kirchman DL, Rich JH, Barber RT. Biomass and biomass production of heterotrophic bacteria along 140°W in the equatorial Pacific: Effect of temperature on the microbial loop Deep-Sea Research Part Ii. 42: 603-619. DOI: 10.1016/0967-0645(95)00021-H  0.422
1994 Hoch MP, Fogel ML, Kirchman DL. Isotope fractionation during ammonium uptake by marine microbial assemblages Geomicrobiology Journal. 12: 113-127. DOI: 10.1080/01490459409377977  0.404
1994 Keil RG, Kirchman DL. Abiotic transformation of labile protein to refractory protein in sea water Marine Chemistry. 45: 187-196. DOI: 10.1016/0304-4203(94)90002-7  0.357
1994 Kirchman DL. The uptake of inorganic nutrients by heterotrophic bacteria Microbial Ecology. 28: 255-271. DOI: 10.1007/Bf00166816  0.509
1993 Keil RG, Kirchman DL. Dissolved combined amino acids: chemical form and utilization by marine bacteria Limnology & Oceanography. 38: 1256-1270. DOI: 10.4319/Lo.1993.38.6.1256  0.353
1993 Vandevivere P, Kirchman DL. Attachment stimulates exopolysaccharide synthesis by a bacterium Applied and Environmental Microbiology. 59: 3280-3286. DOI: 10.1128/Aem.59.10.3280-3286.1993  0.351
1993 Ducklow HW, Kirchman DL, Quinby HL, Carlson CA, Dam HG. Stocks and dynamics of bacterioplankton carbon during the spring bloom in the eastern North Atlantic Ocean Deep-Sea Research Part Ii. 40: 245-263. DOI: 10.1016/0967-0645(93)90016-G  0.398
1993 Kirchman DL, Keel RG, Simon M, Welschmeyer NA. Biomass and production of heterotrophic bacterioplankton in the oceanic subarctic Pacific Deep-Sea Research Part I. 40: 967-988. DOI: 10.1016/0967-0637(93)90084-G  0.317
1993 Landry MR, Gifford DJ, Kirchman DL, Wheeler PA, Monger BC. Direct and indirect effects of grazing by Neocalanus plumchrus on plankton community dynamics in the subarctic Pacific Progress in Oceanography. 32: 239-258. DOI: 10.1016/0079-6611(93)90016-7  0.402
1993 Hoch MP, Kirchman DL. Seasonal and inter-annual variability in bacterial production and biomass in a temperate estuary Marine Ecology Progress Series. 98: 283-295.  0.307
1992 Hoch MP, Fogel ML, Kirchman DL. Isotope fractionation associated with ammonium uptake by a marine bacterium Limnology & Oceanography. 37: 1447-1459. DOI: 10.4319/Lo.1992.37.7.1447  0.376
1992 Nagata T, Kirchman DL. Release of macromolecular organic complexes by heterotrophic marine flagellates Marine Ecology Progress Series. 83: 233-240. DOI: 10.3354/Meps083233  0.331
1992 Simon M, Welschmeyer NA, Kirchman DL. Bacterial production and the sinking flux of particulate organic matter in the subarctic Pacific Deep Sea Research Part a, Oceanographic Research Papers. 39: 1997-2008. DOI: 10.1016/0198-0149(92)90010-Q  0.448
1992 Urban ER, Kirchman DL. Effect of kaolinite clay on the feeding activity of the eastern oyster Crassostrea virginica (Gmelin) Journal of Experimental Marine Biology and Ecology. 160: 47-60. DOI: 10.1016/0022-0981(92)90109-N  0.335
1992 Ducklow HW, Kirchman DL, Quinby HL. Bacterioplankton cell growth and macromolecular synthesis in seawater cultures during the North Atlantic Spring Phytoplankton Bloom, May, 1989 Microbial Ecology. 24: 125-144. DOI: 10.1007/Bf00174450  0.393
1991 Nagata T, Kirchman DL. Release of dissolved free and combined amino acids by bacterivorous marine flagellates Limnology and Oceanography. 36: 433-443. DOI: 10.4319/Lo.1991.36.3.0433  0.306
1991 Keil R, Kirchman D. Contribution of dissolved free amino acids and ammonium to the nitrogen requirements of heterotrophic bacterioplankton Marine Ecology Progress Series. 73: 1-10. DOI: 10.3354/Meps073001  0.355
1991 Kirchman DL, Suzuki Y, Garside C, Ducklow HW. High turnover rates of dissolved organic carbon during a spring phytoplankton bloom Nature. 352: 612-614. DOI: 10.1038/352612A0  0.394
1990 Kirchman DL, Keil RG, Wheeler PA. Carbon limitation of ammonium uptake by heterotrophic bacteria in the subarctic Pacific Limnology & Oceanography. 35: 1258-1266. DOI: 10.4319/Lo.1990.35.6.1258  0.381
1990 Nagata T, Kirchman DL. Filtration-induced release of dissolved free amino acids: application to cultures of marine protozoa Marine Ecology Progress Series. 68: 1-5. DOI: 10.3354/Meps068001  0.314
1990 Samuelsson MO, Kirchman DL. Degradation of adsorbed protein by attached bacteria in relationship to surface hydrophobicity Applied and Environmental Microbiology. 56: 3643-3648. DOI: 10.1128/Aem.56.12.3643-3648.1990  0.35
1989 Wheeler PA, Kirchman DL, Landry MR, Kokkinakis SA. Diel periodicity in ammonium uptake and regeneration in the oceanic subarctic Pacific: implications for interactions in microbial food webs Limnology & Oceanography. 34: 1025-1033. DOI: 10.4319/Lo.1989.34.6.1025  0.447
1989 Kirchman DL, Keil RG, Wheeler PA. The effect of amino acids on ammonium utilization and regeneration by heterotrophic bacteria in the subarctic Pacific Deep Sea Research Part a, Oceanographic Research Papers. 36: 1763-1776. DOI: 10.1016/0198-0149(89)90071-X  0.322
1988 Chin-Leo G, Kirchman DL. Estimating bacterial production in marine waters from the simultaneous incorporation of thymidine and leucine Applied and Environmental Microbiology. 54: 1934-1939. DOI: 10.1128/Aem.54.8.1934-1939.1988  0.383
1986 Fuhrman JA, Ducklow HW, Kirchman DL, McManus GB. Adenine and total microbial production: A reply Limnology and Oceanography. 31: 1395-1400. DOI: 10.4319/Lo.1986.31.6.1395  0.343
1986 Wheeler PA, Kirchman DL. Utilization of inorganic and organic nitrogen by bacteria in marine systems Limnology & Oceanography. 31: 998-1009. DOI: 10.4319/Lo.1986.31.5.0998  0.418
1986 Kirchman DL, Hodson RE. Metabolic regulation of amino acid uptake in marine waters Limnology & Oceanography. 31: 339-350. DOI: 10.4319/Lo.1986.31.2.0339  0.403
1986 McDonough RJ, Sanders RW, Porter KG, Kirchman DL. Depth Distribution of Bacterial Production in a Stratified Lake with an Anoxic Hypolimnion † Applied and Environmental Microbiology. 52: 992-1000. DOI: 10.1128/Aem.52.5.992-1000.1986  0.418
1985 Kirchman D, K'nees E, Hodson R. Leucine incorporation and its potential as a measure of protein synthesis by bacteria in natural aquatic systems. Applied and Environmental Microbiology. 49: 599-607. PMID 3994368 DOI: 10.1128/Aem.49.3.599-607.1985  0.384
1984 Kirchman D, Hodson R. Inhibition by peptides of amino Acid uptake by bacterial populations in natural waters: implications for the regulation of amino Acid transport and incorporation. Applied and Environmental Microbiology. 47: 624-631. PMID 16346504 DOI: 10.1128/Aem.47.4.624-631.1984  0.311
1983 Kirchman D. The production of bacteria attached to particles suspended in a freshwater pond1 Limnology and Oceanography. 28: 858-872. DOI: 10.4319/Lo.1983.28.5.0858  0.369
1983 Ducklow HW, Kirchman DL. Bacterial dynamics and distribution during a spring diatom bloom in the Hudson River plume, USA Journal of Plankton Research. 5: 333-355. DOI: 10.1093/Plankt/5.3.333  0.521
1982 Ducklow HW, Kirchman DL, Rowe GT. Production and vertical flux of attached bacteria in the hudson river plume of the new york bight as studied with floating sediment traps. Applied and Environmental Microbiology. 43: 769-76. PMID 16345987 DOI: 10.1128/Aem.43.4.769-776.1982  0.484
1982 Kirchman D, Mitchell R. Contribution of Particle-Bound Bacteria to Total Microheterotrophic Activity in Five Ponds and Two Marshes Applied and Environmental Microbiology. 43: 200-209. PMID 16345921 DOI: 10.1128/Aem.43.1.200-209.1982  0.384
1982 Kirchman D, Ducklow H, Mitchell R. Estimates of bacterial growth from changes in uptake rates and biomass Applied and Environmental Microbiology. 44: 1296-1307. PMID 6760812 DOI: 10.1128/Aem.44.6.1296-1307.1982  0.362
1981 Kirchman D, Graham S, Reish D, Mitchell R. Bacteria induce settlement and metamorphosis of Janua (Dexiospira) brasiliensis Grube (Polychaeta:Spirprbidae) Journal of Experimental Marine Biology and Ecology. 56: 153-163. DOI: 10.1016/0022-0981(81)90186-6  0.341
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