| Year |
Citation |
Score |
| 2023 |
Hsieh YC, Delarue M, Orland H, Koehl P. Analyzing the Geometry and Dynamics of Viral Structures: A Review of Computational Approaches Based on Alpha Shape Theory, Normal Mode Analysis, and Poisson-Boltzmann Theories. Viruses. 15. PMID 37376665 DOI: 10.3390/v15061366 |
0.594 |
|
| 2021 |
Koehl P, Orland H, Delarue M. Parameterizing elastic network models to capture the dynamics of proteins. Journal of Computational Chemistry. PMID 34117647 DOI: 10.1002/jcc.26701 |
0.604 |
|
| 2021 |
Koehl P, Delarue M, Orland H. Simultaneous Identification of Multiple Binding Sites in Proteins: A Statistical Mechanics Approach. The Journal of Physical Chemistry. B. PMID 33973782 DOI: 10.1021/acs.jpcb.1c02658 |
0.583 |
|
| 2021 |
Koehl P, Delarue M, Orland H. Physics approach to the variable-mass optimal-transport problem. Physical Review. E. 103: 012113. PMID 33601576 DOI: 10.1103/PhysRevE.103.012113 |
0.529 |
|
| 2019 |
Koehl P, Delarue M, Orland H. Optimal transport at finite temperature. Physical Review. E. 100: 013310. PMID 31499816 DOI: 10.1103/Physreve.100.013310 |
0.59 |
|
| 2019 |
Koehl P, Delarue M, Orland H. Statistical Physics Approach to the Optimal Transport Problem. Physical Review Letters. 123: 040603. PMID 31491256 DOI: 10.1103/Physrevlett.123.040603 |
0.568 |
|
| 2018 |
Koehl P, Orland H, Delarue M. Numerical Encodings of Amino Acids in Multivariate Gaussian Modeling of Protein Multiple Sequence Alignments. Molecules (Basel, Switzerland). 24. PMID 30597916 DOI: 10.3390/Molecules24010104 |
0.621 |
|
| 2018 |
Hu H, Ataka K, Menny A, Fourati Z, Sauguet L, Corringer PJ, Koehl P, Heberle J, Delarue M. Electrostatics, proton sensor, and networks governing the gating transition in GLIC, a proton-gated pentameric ion channel. Proceedings of the National Academy of Sciences of the United States of America. PMID 30541892 DOI: 10.1073/Pnas.1813378116 |
0.582 |
|
| 2018 |
Koehl P, Delarue M. Coarse-grained dynamics of supramolecules: Conformational changes in outer shells of Dengue viruses. Progress in Biophysics and Molecular Biology. PMID 30273615 DOI: 10.1016/J.Pbiomolbio.2018.09.004 |
0.624 |
|
| 2018 |
Delarue M, Koehl P. Combined approaches from physics, statistics, and computer science for protein structure prediction: (unity is strength)? F1000research. 7. PMID 30079234 DOI: 10.12688/F1000Research.14870.1 |
0.653 |
|
| 2018 |
Koehl P. Large eigenvalue problems in coarse-grained dynamic analyses of supra molecular systems. Journal of Chemical Theory and Computation. PMID 29874072 DOI: 10.1021/Acs.Jctc.8B00338 |
0.378 |
|
| 2017 |
Delarue M, Koehl P, Orland H. Ab initio sampling of transition paths by conditioned Langevin dynamics. The Journal of Chemical Physics. 147: 152703. PMID 29055326 DOI: 10.1063/1.4985651 |
0.594 |
|
| 2017 |
Nojoomi S, Koehl P. A weighted string kernel for protein fold recognition. Bmc Bioinformatics. 18: 378. PMID 28841820 DOI: 10.1186/S12859-017-1795-5 |
0.391 |
|
| 2017 |
Koehl P. Minimum action principle and shape dynamics. Journal of the Royal Society, Interface. 14. PMID 28515327 DOI: 10.1098/Rsif.2017.0031 |
0.313 |
|
| 2017 |
Nojoomi S, Koehl P. String kernels for protein sequence comparisons: improved fold recognition. Bmc Bioinformatics. 18: 137. PMID 28245816 DOI: 10.1186/S12859-017-1560-9 |
0.37 |
|
| 2017 |
Koehl P, Poitevin F, Navaza R, Delarue MH. The renormalization group and its applications to generating coarse-grained models of large biological molecular systems. Journal of Chemical Theory and Computation. PMID 28170254 DOI: 10.1021/Acs.Jctc.6B01136 |
0.609 |
|
| 2017 |
Li J, Koehl P. Geometric Potentials for Computational Protein Sequence Design. Methods in Molecular Biology (Clifton, N.J.). 1529: 125-138. PMID 27914048 DOI: 10.1007/978-1-4939-6637-0_5 |
0.469 |
|
| 2017 |
Fourati Z, Ruza RR, Laverty D, Drege E, Delarue-Cochin S, Joseph D, Koehl P, Smart T, Delarue M. Barbiturates Bind in the GLIC Ion Channel Pore and Cause Inhibition by Stabilizing a Shut State Biophysical Journal. 112: 553a. DOI: 10.1016/J.Bpj.2016.11.2984 |
0.53 |
|
| 2016 |
Hsieh YC, Poitevin F, Delarue M, Koehl P. Comparative Normal Mode Analysis of the Dynamics of DENV and ZIKV Capsids. Frontiers in Molecular Biosciences. 3: 85. PMID 28083537 DOI: 10.3389/Fmolb.2016.00085 |
0.596 |
|
| 2016 |
Fourati Z, Ruza RR, Laverty D, Drège E, Delarue-Cochin S, Joseph D, Koehl P, Smart T, Delarue M. Barbiturates bind in the GLIC ion channel pore and cause inhibition by stabilizing a closed state. The Journal of Biological Chemistry. PMID 27986812 DOI: 10.1074/Jbc.M116.766964 |
0.569 |
|
| 2016 |
Koehl P. Minimum action transition paths connecting minima on an energy surface. The Journal of Chemical Physics. 145: 184111. PMID 27846680 DOI: 10.1063/1.4966974 |
0.418 |
|
| 2015 |
Koehl P, Hass J. Landmark-free geometric methods in biological shape analysis. Journal of the Royal Society, Interface / the Royal Society. 12. PMID 26631331 DOI: 10.1098/Rsif.2015.0795 |
0.325 |
|
| 2014 |
Hass J, Koehl P. How round is a protein? Exploring protein structures for globularity using conformal mapping. Frontiers in Molecular Biosciences. 1: 26. PMID 25988167 DOI: 10.3389/Fmolb.2014.00026 |
0.431 |
|
| 2014 |
Koehl P. Mathematics's role in the grand challenge of deciphering the molecular basis of life. Frontiers in Molecular Biosciences. 1: 2. PMID 25988143 DOI: 10.3389/Fmolb.2014.00002 |
0.386 |
|
| 2014 |
Carlsen M, Koehl P, Røgen P. On the importance of the distance measures used to train and test knowledge-based potentials for proteins. Plos One. 9: e109335. PMID 25411785 DOI: 10.1371/Journal.Pone.0109335 |
0.362 |
|
| 2014 |
Li J, Koehl P. 3D representations of amino acids-applications to protein sequence comparison and classification. Computational and Structural Biotechnology Journal. 11: 47-58. PMID 25379143 DOI: 10.1016/J.Csbj.2014.09.001 |
0.401 |
|
| 2014 |
Xia F, Tong D, Yang L, Wang D, Hoi SC, Koehl P, Lu L. Identifying essential pairwise interactions in elastic network model using the alpha shape theory. Journal of Computational Chemistry. 35: 1111-21. PMID 24648309 DOI: 10.1002/Jcc.23587 |
0.379 |
|
| 2014 |
Francis-Lyon P, Koehl P. Protein side-chain modeling with a protein-dependent optimized rotamer library. Proteins. 82: 2000-17. PMID 24623614 DOI: 10.1002/Prot.24555 |
0.789 |
|
| 2014 |
Koehl P, Hass J. Automatic alignment of genus-zero surfaces. Ieee Transactions On Pattern Analysis and Machine Intelligence. 36: 466-78. PMID 24457504 DOI: 10.1109/Tpami.2013.139 |
0.338 |
|
| 2014 |
Weinreb V, Li L, Chandrasekaran SN, Koehl P, Delarue M, Carter CW. Enhanced amino acid selection in fully evolved tryptophanyl-tRNA synthetase, relative to its urzyme, requires domain motion sensed by the D1 switch, a remote dynamic packing motif. The Journal of Biological Chemistry. 289: 4367-76. PMID 24394410 DOI: 10.1074/Jbc.M113.538660 |
0.584 |
|
| 2014 |
Weiss DR, Koehl P. Morphing methods to visualize coarse-grained protein dynamics Methods in Molecular Biology. 1084: 271-282. PMID 24061927 DOI: 10.1007/978-1-62703-658-0_15 |
0.363 |
|
| 2014 |
Koehl P, Poitevin F, Orland H, Delarue M. Modified Poisson-Boltzmann equations for characterizing biomolecular solvation Journal of Theoretical and Computational Chemistry. 13. DOI: 10.1142/S021963361440001X |
0.6 |
|
| 2014 |
Poitevin F, Sauguet L, Murail S, Baaden M, Corringer P, Koehl P, Orland H, Delarue M. The Dipolar Solvent Model and Its Applications to the Structural Analysis of Low-(SAXS) and High-(CRYSTALLOGRAPHY) Resolution X-Ray Data Biophysical Journal. 106: 663a. DOI: 10.1016/J.Bpj.2013.11.3674 |
0.605 |
|
| 2013 |
Li J, Mach P, Koehl P. Measuring the shapes of macromolecules - and why it matters. Computational and Structural Biotechnology Journal. 8: e201309001. PMID 24688748 DOI: 10.5936/Csbj.201309001 |
0.767 |
|
| 2013 |
Kabasakal BV, Gae DD, Li J, Lagarias JC, Koehl P, Fisher AJ. His74 conservation in the bilin reductase PcyA family reflects an important role in protein-substrate structure and dynamics Archives of Biochemistry and Biophysics. 537: 233-242. PMID 23911721 DOI: 10.1016/J.Abb.2013.07.021 |
0.772 |
|
| 2013 |
Mach P, Koehl P. Capturing protein sequence-structure specificity using computational sequence design. Proteins. 81: 1556-70. PMID 23609941 DOI: 10.1002/Prot.24307 |
0.763 |
|
| 2013 |
Smaoui MR, Poitevin F, Delarue M, Koehl P, Orland H, Waldispühl J. Computational assembly of polymorphic amyloid fibrils reveals stable aggregates. Biophysical Journal. 104: 683-93. PMID 23442919 DOI: 10.1016/J.Bpj.2012.12.037 |
0.586 |
|
| 2013 |
Fushing H, Wang H, Vanderwaal K, McCowan B, Koehl P. Multi-scale clustering by building a robust and self correcting ultrametric topology on data points. Plos One. 8: e56259. PMID 23424653 DOI: 10.1371/Journal.Pone.0056259 |
0.3 |
|
| 2013 |
Sauguet L, Poitevin F, Murail S, Van Renterghem C, Moraga-Cid G, Malherbe L, Thompson AW, Koehl P, Corringer PJ, Baaden M, Delarue M. Structural basis for ion permeation mechanism in pentameric ligand-gated ion channels. The Embo Journal. 32: 728-41. PMID 23403925 DOI: 10.1038/Emboj.2013.17 |
0.564 |
|
| 2013 |
Røgen P, Koehl P. Extracting knowledge from protein structure geometry. Proteins. 81: 841-51. PMID 23280479 DOI: 10.1002/Prot.24242 |
0.454 |
|
| 2013 |
Mach P, Koehl P. An analytical method for computing atomic contact areas in biomolecules. Journal of Computational Chemistry. 34: 105-20. PMID 22965816 DOI: 10.1002/Jcc.23111 |
0.765 |
|
| 2012 |
di Luccio E, Koehl P. The H-factor as a novel quality metric for homology modeling. Journal of Clinical Bioinformatics. 2: 18. PMID 23121764 DOI: 10.1186/2043-9113-2-18 |
0.364 |
|
| 2012 |
Koehl P. Fast recursive computation of 3D geometric moments from surface meshes. Ieee Transactions On Pattern Analysis and Machine Intelligence. 34: 2158-63. PMID 22997126 DOI: 10.1109/Tpami.2012.23 |
0.303 |
|
| 2012 |
Gu S, Koehl P, Hass J, Amenta N. Surface-histogram: a new shape descriptor for protein-protein docking. Proteins. 80: 221-38. PMID 22072544 DOI: 10.1002/Prot.23192 |
0.423 |
|
| 2011 |
Miao L, Qin H, Koehl P, Song J. Selective and specific ion binding on proteins at physiologically-relevant concentrations. Febs Letters. 585: 3126-32. PMID 21907714 DOI: 10.1016/J.Febslet.2011.08.048 |
0.348 |
|
| 2011 |
Hu C, Koehl P, Max N. PackHelix: a tool for helix-sheet packing during protein structure prediction. Proteins. 79: 2828-43. PMID 21905109 DOI: 10.1002/Prot.23108 |
0.428 |
|
| 2011 |
Koehl P, Orland H, Delarue M. Adapting Poisson-Boltzmann to the self-consistent mean field theory: application to protein side-chain modeling. The Journal of Chemical Physics. 135: 055104. PMID 21823735 DOI: 10.1063/1.3621831 |
0.651 |
|
| 2011 |
Mach P, Koehl P. Geometric measures of large biomolecules: surface, volume, and pockets. Journal of Computational Chemistry. 32: 3023-38. PMID 21823134 DOI: 10.1002/Jcc.21884 |
0.761 |
|
| 2011 |
Poitevin F, Orland H, Doniach S, Koehl P, Delarue M. AquaSAXS: a web server for computation and fitting of SAXS profiles with non-uniformally hydrated atomic models. Nucleic Acids Research. 39: W184-9. PMID 21665925 DOI: 10.1093/Nar/Gkr430 |
0.615 |
|
| 2011 |
di Luccio E, Koehl P. A quality metric for homology modeling: the H-factor. Bmc Bioinformatics. 12: 48. PMID 21291572 DOI: 10.1186/1471-2105-12-48 |
0.424 |
|
| 2010 |
Francis-Lyon P, Gu S, Hass J, Amenta N, Koehl P. Sampling the conformation of protein surface residues for flexible protein docking. Bmc Bioinformatics. 11: 575. PMID 21092317 DOI: 10.1186/1471-2105-11-575 |
0.782 |
|
| 2010 |
Hu C, Koehl P. Helix-sheet packing in proteins. Proteins. 78: 1736-47. PMID 20186972 DOI: 10.1002/Prot.22688 |
0.412 |
|
| 2010 |
Koehl P, Delarue M. AQUASOL: An efficient solver for the dipolar Poisson-Boltzmann-Langevin equation. The Journal of Chemical Physics. 132: 064101. PMID 20151727 DOI: 10.1063/1.3298862 |
0.574 |
|
| 2009 |
Koehl P, Orland H, Delarue M. Computing ion solvation free energies using the dipolar Poisson model. The Journal of Physical Chemistry. B. 113: 5694-7. PMID 19385689 DOI: 10.1021/Jp9010907 |
0.583 |
|
| 2009 |
Koehl P, Orland H, Delarue M. Beyond the Poisson-Boltzmann model: modeling biomolecule-water and water-water interactions. Physical Review Letters. 102: 087801. PMID 19257790 DOI: 10.1103/Physrevlett.102.087801 |
0.595 |
|
| 2009 |
Laowanapiban P, Kapustina M, Vonrhein C, Delarue M, Koehl P, Carter CW. Independent saturation of three TrpRS subsites generates a partially assembled state similar to those observed in molecular simulations. Proceedings of the National Academy of Sciences of the United States of America. 106: 1790-5. PMID 19174517 DOI: 10.1073/Pnas.0812752106 |
0.612 |
|
| 2009 |
Le Q, Pollastri G, Koehl P. Structural alphabets for protein structure classification: a comparison study. Journal of Molecular Biology. 387: 431-50. PMID 19135454 DOI: 10.1016/J.Jmb.2008.12.044 |
0.417 |
|
| 2009 |
Koehl P, Orland H, Delarue M. Solvation of ion pairs: The poisson-langevin model 2009 International Conference On Signal Processing Systems, Icsps 2009. 917-923. DOI: 10.1109/ICSPS.2009.128 |
0.583 |
|
| 2008 |
Azuara C, Orland H, Bon M, Koehl P, Delarue M. Incorporating dipolar solvents with variable density in Poisson-Boltzmann electrostatics. Biophysical Journal. 95: 5587-605. PMID 18820239 DOI: 10.1529/Biophysj.108.131649 |
0.627 |
|
| 2007 |
Franklin J, Koehl P, Doniach S, Delarue M. MinActionPath: maximum likelihood trajectory for large-scale structural transitions in a coarse-grained locally harmonic energy landscape. Nucleic Acids Research. 35: W477-82. PMID 17545201 DOI: 10.1093/Nar/Gkm342 |
0.604 |
|
| 2006 |
Lindahl E, Azuara C, Koehl P, Delarue M. NOMAD-Ref: visualization, deformation and refinement of macromolecular structures based on all-atom normal mode analysis. Nucleic Acids Research. 34: W52-6. PMID 16845062 DOI: 10.1093/Nar/Gkl082 |
0.604 |
|
| 2006 |
Azuara C, Lindahl E, Koehl P, Orland H, Delarue M. PDB_Hydro: incorporating dipolar solvents with variable density in the Poisson-Boltzmann treatment of macromolecule electrostatics. Nucleic Acids Research. 34: W38-42. PMID 16845031 DOI: 10.1093/Nar/Gkl072 |
0.642 |
|
| 2006 |
Koehl P. Electrostatics calculations: latest methodological advances. Current Opinion in Structural Biology. 16: 142-51. PMID 16540310 DOI: 10.1016/J.Sbi.2006.03.001 |
0.39 |
|
| 2006 |
Zomorodian A, Guibas L, Koehl P. Geometric filtering of pairwise atomic interactions applied to the design of efficient statistical potentials Computer Aided Geometric Design. 23: 531-544. DOI: 10.1016/J.Cagd.2006.03.002 |
0.414 |
|
| 2005 |
Thompson JD, Koehl P, Ripp R, Poch O. BAliBASE 3.0: latest developments of the multiple sequence alignment benchmark. Proteins. 61: 127-36. PMID 16044462 DOI: 10.1002/Prot.20527 |
0.406 |
|
| 2005 |
Thompson JD, Holbrook SR, Katoh K, Koehl P, Moras D, Westhof E, Poch O. MAO: a Multiple Alignment Ontology for nucleic acid and protein sequences. Nucleic Acids Research. 33: 4164-71. PMID 16043635 DOI: 10.1093/Nar/Gki735 |
0.348 |
|
| 2005 |
Kolodny R, Koehl P, Levitt M. Comprehensive evaluation of protein structure alignment methods: scoring by geometric measures. Journal of Molecular Biology. 346: 1173-88. PMID 15701525 DOI: 10.1016/J.Jmb.2004.12.032 |
0.42 |
|
| 2005 |
Kolodny R, Guibas L, Levitt M, Koehl P. Inverse kinematics in biology: The protein loop closure problem International Journal of Robotics Research. 24: 151-163. DOI: 10.1177/0278364905050352 |
0.461 |
|
| 2004 |
Chandonia JM, Hon G, Walker NS, Lo Conte L, Koehl P, Levitt M, Brenner SE. The ASTRAL Compendium in 2004. Nucleic Acids Research. 32: D189-92. PMID 14681391 DOI: 10.1093/Nar/Gkh034 |
0.329 |
|
| 2002 |
Kolodny R, Koehl P, Guibas L, Levitt M. Small libraries of protein fragments model native protein structures accurately. Journal of Molecular Biology. 323: 297-307. PMID 12381322 DOI: 10.1016/S0022-2836(02)00942-7 |
0.426 |
|
| 2002 |
Koehl P, Levitt M. Sequence variations within protein families are linearly related to structural variations. Journal of Molecular Biology. 323: 551-62. PMID 12381308 DOI: 10.1016/S0022-2836(02)00971-3 |
0.383 |
|
| 2002 |
Koehl P, Levitt M. Protein topology and stability define the space of allowed sequences. Proceedings of the National Academy of Sciences of the United States of America. 99: 1280-5. PMID 11805293 DOI: 10.1073/Pnas.032405199 |
0.377 |
|
| 2002 |
Koehl P, Levitt M. Improved recognition of native-like protein structures using a family of designed sequences. Proceedings of the National Academy of Sciences of the United States of America. 99: 691-6. PMID 11782533 DOI: 10.1073/Pnas.022408799 |
0.431 |
|
| 2002 |
Chandonia JM, Walker NS, Lo Conte L, Koehl P, Levitt M, Brenner SE. ASTRAL compendium enhancements. Nucleic Acids Research. 30: 260-3. PMID 11752310 DOI: 10.1093/Nar/30.1.260 |
0.347 |
|
| 2001 |
Wedekind JE, Trame CB, Dorywalska M, Koehl P, Raschke TM, McKee M, FitzGerald D, Collier RJ, McKay DB. Refined crystallographic structure of Pseudomonas aeruginosa exotoxin A and its implications for the molecular mechanism of toxicity. Journal of Molecular Biology. 314: 823-37. PMID 11734000 DOI: 10.1006/Jmbi.2001.5195 |
0.323 |
|
| 2001 |
Koehl P. Protein structure similarities Current Opinion in Structural Biology. 11: 348-353. PMID 11406386 DOI: 10.1016/S0959-440X(00)00214-1 |
0.423 |
|
| 2000 |
Samudrala R, Huang ES, Koehl P, Levitt M. Constructing side chains on near-native main chains for ab initio protein structure prediction. Protein Engineering. 13: 453-7. PMID 10906341 DOI: 10.1093/Protein/13.7.453 |
0.414 |
|
| 2000 |
Brenner SE, Koehl P, Levitt M. The ASTRAL compendium for protein structure and sequence analysis. Nucleic Acids Research. 28: 254-6. PMID 10592239 DOI: 10.1093/Nar/28.1.254 |
0.407 |
|
| 1999 |
Koehl P, Levitt M. De novo protein design. II. Plasticity in sequence space Journal of Molecular Biology. 293: 1183-1193. PMID 10547294 DOI: 10.1006/Jmbi.1999.3212 |
0.384 |
|
| 1999 |
Koehl P, Levitt M. De novo protein design. I. In search of stability and specificity Journal of Molecular Biology. 293: 1161-1181. PMID 10547293 DOI: 10.1006/Jmbi.1999.3211 |
0.424 |
|
| 1999 |
Koehl P, Levitt M. Structure-based conformational preferences of amino acids Proceedings of the National Academy of Sciences of the United States of America. 96: 12524-12529. PMID 10535955 DOI: 10.1073/Pnas.96.22.12524 |
0.409 |
|
| 1999 |
Koehl P, Levitt M. A brighter future for protein structure prediction Nature Structural Biology. 6: 108-111. PMID 10048917 DOI: 10.1038/5794 |
0.355 |
|
| 1998 |
Huang ES, Koehl P, Levitt M, Pappu RV, Ponder JW. Accuracy of side-chain prediction upon near-native protein backbones generated by Ab initio folding methods. Proteins. 33: 204-17. PMID 9779788 DOI: 10.1002/(Sici)1097-0134(19981101)33:2<204::Aid-Prot5>3.0.Co;2-I |
0.407 |
|
| 1998 |
Furuichi E, Koehl P. Influence of protein structure databases on the predictive power of statistical pair potentials Proteins: Structure, Function and Genetics. 31: 139-149. PMID 9593188 DOI: 10.1002/(Sici)1097-0134(19980501)31:2<139::Aid-Prot4>3.0.Co;2-H |
0.429 |
|
| 1998 |
Koehl P, Delarue M. Building protein lattice models using self-consistent mean field theory Journal of Chemical Physics. 108: 9540-9549. DOI: 10.1063/1.476402 |
0.635 |
|
| 1997 |
Koehl P, Delarue M. The native sequence determines sidechain packing in a protein, but does optimal sidechain packing determine the native sequence? Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 198-209. PMID 9390292 |
0.336 |
|
| 1997 |
Delarue M, Koehl P. The inverse protein folding problem: self consistent mean field optimisation of a structure specific mutation matrix Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 109-121. PMID 9390284 |
0.306 |
|
| 1996 |
Koehl P, Delarue M. Mean-field minimization methods for biological macromolecules Current Opinion in Structural Biology. 6: 222-226. PMID 8728655 DOI: 10.1016/S0959-440X(96)80078-9 |
0.647 |
|
| 1996 |
Sunada S, Go N, Koehl P. Calculation of nuclear magnetic resonance order parameters in proteins by normal mode analysis Journal of Chemical Physics. 104: 4768-4775. DOI: 10.1063/1.471170 |
0.331 |
|
| 1995 |
Delarue M, Koehl P. Atomic environment energies in proteins defined from statistics of accessible and contact surface areas Journal of Molecular Biology. 249: 675-690. PMID 7783220 DOI: 10.1006/Jmbi.1995.0328 |
0.628 |
|
| 1995 |
Koehl P, Delarue M. A self consistent mean field approach to simultaneous gap closure and side-chain positioning in homology modelling Nature Structural Biology. 2: 163-170. PMID 7538429 DOI: 10.1038/Nsb0295-163 |
0.597 |
|
| 1994 |
Koehl P, Delarue M. Application of a self-consistent mean field theory to predict protein side-chains conformation and estimate their conformational entropy Journal of Molecular Biology. 239: 249-275. PMID 8196057 DOI: 10.1006/Jmbi.1994.1366 |
0.646 |
|
| 1994 |
Mohn G, Koehl P, Budzikiewicz H, Lefèvre JF. Solution structure of pyoverdin GM-II. Biochemistry. 33: 2843-51. PMID 8130197 DOI: 10.1021/Bi00176A014 |
0.305 |
|
| 1994 |
Koehl P, Delarue M. Polar and nonpolar atomic environments in the protein core: Implications for folding and binding Proteins: Structure, Function and Genetics. 20: 264-278. PMID 7892175 DOI: 10.1002/Prot.340200307 |
0.658 |
|
| 1993 |
Kieffer B, Koehl P, Plaue S, Lefèvre JF. Structural and dynamic studies of two antigenic loops from haemagglutinin: A relaxation matrix approach Journal of Biomolecular Nmr. 3: 91-112. PMID 7680587 DOI: 10.1007/Bf00242478 |
0.337 |
|
| 1993 |
Koehl P, Delarue M. Environment energy and protein stability Protein Engineering, Design and Selection. 6: 128. DOI: 10.1093/protein/6.Supplement.128-b |
0.536 |
|
| 1992 |
Koehl P, Lefèvre JF, Jardetzky O. Computing the geometry of a molecule in dihedral angle space using n.m.r.-derived constraints. A new algorithm based on optimal filtering. Journal of Molecular Biology. 223: 299-315. PMID 1731075 DOI: 10.1016/0022-2836(92)90732-Y |
0.366 |
|
| 1990 |
Koehl P, Lefèvre JF. The reconstruction of the relaxation matrix from an incomplete set of nuclear overhauser effects Journal of Magnetic Resonance (1969). 86: 565-583. DOI: 10.1016/0022-2364(90)90034-7 |
0.306 |
|
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