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Xinshuai Qi, Ph.D - Publications

Affiliations: 
2004-2008 Biology Northwest A & F University 
 2008-2013 Biology Zhejiang University, Hangzhou Shi, Zhejiang Sheng, China 
 2011-2013 Biology University of Florida, Gainesville, Gainesville, FL, United States 
 2013-2014 Biology Washington University, Saint Louis, St. Louis, MO 
 2014-2016 EEB University of Arizona, Tucson, AZ 
Area:
evolution genome bioinformatics plant
Website:
http://xinshuaiqi.weebly.com/
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28 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 McAlvay AC, Ragsdale AP, Mabry ME, Qi X, Bird KA, Velasco P, An H, Pires JC, Emshwiller E. Brassica Rapa domestication: untangling wild and feral forms and convergence of crop morphotypes. Molecular Biology and Evolution. PMID 33930151 DOI: 10.1093/molbev/msab108  0.355
2021 Hao Y, Mabry ME, Edger PP, Freeling M, Zheng C, Jin L, VanBuren R, Colle M, An H, Abrahams RS, Washburn JD, Qi X, Barry K, Daum C, Shu S, et al. The contributions from the progenitor genomes of the mesopolyploid Brassiceae are evolutionarily distinct but functionally compatible. Genome Research. PMID 33863805 DOI: 10.1101/gr.270033.120  0.725
2021 Qi X, An H, Hall TE, Di C, Blischak PD, McKibben MTW, Hao Y, Conant GC, Pires JC, Barker MS. Genes derived from ancient polyploidy have higher genetic diversity and are associated with domestication in Brassica rapa. The New Phytologist. PMID 33452818 DOI: 10.1111/nph.17194  0.668
2019 An H, Qi X, Gaynor ML, Hao Y, Gebken SC, Mabry ME, McAlvay AC, Teakle GR, Conant GC, Barker MS, Fu T, Yi B, Pires JC. Transcriptome and organellar sequencing highlights the complex origin and diversification of allotetraploid Brassica napus. Nature Communications. 10: 2878. PMID 31253789 DOI: 10.1038/S41467-019-10757-1  0.653
2019 Vigueira CC, Qi X, Song BK, Li LF, Caicedo AL, Jia Y, Olsen KM. Call of the wild rice: shapes weedy rice evolution in Southeast Asia. Evolutionary Applications. 12: 93-104. PMID 30622638 DOI: 10.1111/Eva.12581  0.637
2018 Yang J, Yeh CE, Kastoori Ramamurthy R, Qi X, Fernando RL, Dekkers JCM, Garrick DJ, Nettleton D, Schnable PS. Empirical Comparisons of Different Statistical Models To Identify and Validate Kernel Row Number-Associated Variants from Structured Multi-parent Mapping Populations of Maize. G3 (Bethesda, Md.). PMID 30213868 DOI: 10.1534/G3.118.200636  0.428
2017 Qi X, An H, Ragsdale A, Hall TE, Gutenkunst RN, Pires JC, Barker MS. Genomic inferences of domestication events are corroborated by written records in Brassica rapa. Molecular Ecology. PMID 28371014 DOI: 10.1111/Mec.14131  0.66
2016 Ge F, Li X, Ju H, Yang D, Liu J, Qi X, Wang J, Yang X, Qiu Y, Liu P, Zhou J. Genotypic evolution and antigenicity of H9N2 influenza viruses in Shanghai, China. Archives of Virology. PMID 26935915 DOI: 10.1007/s00705-016-2767-1  0.418
2016 Klionsky DJ, Abdelmohsen K, Abe A, Abedin MJ, Abeliovich H, Acevedo Arozena A, Adachi H, Adams CM, Adams PD, Adeli K, Adhihetty PJ, Adler SG, Agam G, Agarwal R, Aghi MK, ... Qi X, et al. Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition). Autophagy. 12: 1-222. PMID 26799652 DOI: 10.1080/15548627.2015.1100356  0.464
2015 Qi X, Liu Y, Vigueira CC, Young ND, Caicedo AL, Jia Y, Gealy DR, Olsen KM. More than one way to evolve a weed: parallel evolution of US weedy rice through independent genetic mechanisms. Molecular Ecology. PMID 26031196 DOI: 10.1111/Mec.13256  0.624
2015 Liu Y, Qi X, Gealy D, Olsen KM, Caicedo AL, Jia Y. QTLs Analysis for Resistance to Blast Disease in US Weedy Rice. Molecular Plant-Microbe Interactions : Mpmi. PMID 25761210 DOI: 10.1094/Mpmi-12-14-0386-R  0.553
2015 Chang CL, Qi XY, Zhang JW, Qiu YM, Li XJ, Wang X, Bai Y, Sun JL, Liu HW. Facile synthesis of magnetic homochiral metal-organic frameworks for "enantioselective fishing". Chemical Communications (Cambridge, England). 51: 3566-9. PMID 25634544 DOI: 10.1039/c4cc09988e  0.386
2015 Liu Y, Qi X, Young ND, Olsen KM, Caicedo AL, Jia Y. Characterization of resistance genes to rice blast fungus Magnaporthe oryzae in a “Green Revolution” rice variety Molecular Breeding. 35. DOI: 10.1007/S11032-015-0256-Y  0.588
2014 Qi XS, Yuan N, Comes HP, Sakaguchi S, Qiu YX. A strong 'filter' effect of the East China Sea land bridge for East Asia's temperate plant species: inferences from molecular phylogeography and ecological niche modelling of Platycrater arguta (Hydrangeaceae). Bmc Evolutionary Biology. 14: 41. PMID 24593236 DOI: 10.1186/1471-2148-14-41  0.587
2013 Stull GW, Moore MJ, Mandala VS, Douglas NA, Kates HR, Qi X, Brockington SF, Soltis PS, Soltis DE, Gitzendanner MA. A targeted enrichment strategy for massively parallel sequencing of angiosperm plastid genomes. Applications in Plant Sciences. 1. PMID 25202518 DOI: 10.3732/Apps.1200497  0.731
2013 Qi X, Chanderbali AS, Wong GK, Soltis DE, Soltis PS. Phylogeny and evolutionary history of glycogen synthase kinase 3/SHAGGY-like kinase genes in land plants. Bmc Evolutionary Biology. 13: 143. PMID 23834366 DOI: 10.1186/1471-2148-13-143  0.627
2013 Yang J, Chen T, Sun L, Zhao Z, Qi X, Zhou K, Cao Y, Wang X, Qiu Y, Su M, Zhao A, Wang P, Yang P, Wu J, Feng G, et al. Potential metabolite markers of schizophrenia. Molecular Psychiatry. 18: 67-78. PMID 22024767 DOI: 10.1038/mp.2011.131  0.428
2012 Yuan N, Comes HP, Mao YR, Qi XS, Qiu YX. Genetic effects of recent habitat fragmentation in the Thousand-Island Lake region of southeast China on the distylous herb Hedyotis chrysotricha (Rubiaceae). American Journal of Botany. 99: 1715-25. PMID 23024122 DOI: 10.3732/Ajb.1200054  0.588
2012 Qi XS, Chen C, Comes HP, Sakaguchi S, Liu YH, Tanaka N, Sakio H, Qiu YX. Molecular data and ecological niche modelling reveal a highly dynamic evolutionary history of the East Asian Tertiary relict Cercidiphyllum (Cercidiphyllaceae). The New Phytologist. 196: 617-30. PMID 22845876 DOI: 10.1111/J.1469-8137.2012.04242.X  0.571
2012 Qi XS, Yuan N, Qiu YX. Development of 12 microsatellite markers for Platycrater arguta (Hydrangeaceae) endemic to East Asia. American Journal of Botany. 99: e304-6. PMID 22837408 DOI: 10.3732/Ajb.1100582  0.574
2012 Sakaguchi S, Qiu YX, Liu YH, Qi XS, Kim SH, Han J, Takeuchi Y, Worth JR, Yamasaki M, Sakurai S, Isagi Y. Climate oscillation during the Quaternary associated with landscape heterogeneity promoted allopatric lineage divergence of a temperate tree Kalopanax septemlobus (Araliaceae) in East Asia. Molecular Ecology. 21: 3823-38. PMID 22646502 DOI: 10.1111/J.1365-294X.2012.05652.X  0.582
2012 Godden GT, Jordon-Thaden IE, Chamala S, Crowl AA, García N, Germain-Aubrey CC, Heaney JM, Latvis M, Qi X, Gitzendanner MA. Making next-generation sequencing work for you: approaches and practical considerations for marker development and phylogenetics Plant Ecology and Diversity. 5: 427-450. DOI: 10.1080/17550874.2012.745909  0.717
2011 Chi Y, Xia H, Su M, Song P, Qi X, Cui Y, Cao Y, Chen T, Qiu Y, Zhao A, Ma X, Zheng X, Jia W. Metabonomic phenotyping reveals an embryotoxicity of deca-brominated diphenyl ether in mice. Chemical Research in Toxicology. 24: 1976-83. PMID 21995789 DOI: 10.1021/tx200300v  0.416
2011 Zheng X, Su M, Pei L, Zhang T, Ma X, Qiu Y, Xia H, Wang F, Zheng X, Gu X, Song X, Li X, Qi X, Chen G, Bao Y, et al. Metabolic signature of pregnant women with neural tube defects in offspring. Journal of Proteome Research. 10: 4845-54. PMID 21902205 DOI: 10.1021/pr200666d  0.415
2011 Xie X, Qiu Y, Ke L, Zheng X, Wu G, Chen J, Qi X, Ahn S. Microsatellite primers in red bayberry, Myrica rubra (Myricaceae). American Journal of Botany. 98: e93-5. PMID 21613157 DOI: 10.3732/ajb.1000271  0.468
2011 Chen T, Xie G, Wang X, Fan J, Qiu Y, Zheng X, Qi X, Cao Y, Su M, Wang X, Xu LX, Yen Y, Liu P, Jia W. Serum and urine metabolite profiling reveals potential biomarkers of human hepatocellular carcinoma. Molecular & Cellular Proteomics : McP. 10: M110.004945. PMID 21518826 DOI: 10.1074/Mcp.M110.004945  0.41
2010 Xie G, Zheng X, Qi X, Cao Y, Chi Y, Su M, Ni Y, Qiu Y, Liu Y, Li H, Zhao A, Jia W. Metabonomic evaluation of melamine-induced acute renal toxicity in rats. Journal of Proteome Research. 9: 125-33. PMID 19476335 DOI: 10.1021/pr900333h  0.408
2009 Qiu Y, Qi X, Jin X, Tao X, Fu C, Naiki A, Comes HP. Population genetic structure, phylogeography, and demographic history of Platycrater arguta (Hydrangeaceae) endemic to East China and South Japan, inferred from chloroplast DNA sequence variation. Taxon. 58: 1226-1241. DOI: 10.1002/Tax.584014  0.587
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