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Chungoo Park, Ph.D. - Publications

Affiliations: 
University of Michigan, Ann Arbor, Ann Arbor, MI 
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38 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Kwak HJ, Lee SG, Park SC, Kim JH, Weisblat DA, Park C, Cho SJ. Head transcriptome profiling of glossiphoniid leech () reveals clues about proboscis development. Open Biology. 12: 210298. PMID 35232253 DOI: 10.1098/rsob.210298  0.307
2021 Oh J, Lee SG, Park C. PIC-Me: paralogs and isoforms classifier based on machine-learning approaches. Bmc Bioinformatics. 22: 311. PMID 34674638 DOI: 10.1186/s12859-021-04229-x  0.342
2021 Lee SG, Na D, Park C. Comparability of reference-based and reference-free transcriptome analysis approaches at the gene expression level. Bmc Bioinformatics. 22: 310. PMID 34674628 DOI: 10.1186/s12859-021-04226-0  0.343
2021 Jung YJ, Jo J, Bae Y, Xi H, Seol MA, Yoo SH, Park J, Park C. The complete mitochondrial genome of (Sulzer, 1776; Hemiptera: Aphididae) isolated in Korea. Mitochondrial Dna. Part B, Resources. 6: 10-12. PMID 33490586 DOI: 10.1080/23802359.2020.1842817  0.347
2020 Cho N, Lee SG, Kim JO, Kim YA, Kim EM, Park C, Ji JH, Kim KK. Identification of Differentially Expressed Genes Associated with Extracellular Matrix Degradation and Inflammatory Regulation in Calcific Tendinopathy Using RNA Sequencing. Calcified Tissue International. PMID 32776213 DOI: 10.1007/S00223-020-00743-X  0.305
2020 Cheon S, Zhang J, Park C. Is phylotranscriptomics as reliable as phylogenomics? Molecular Biology and Evolution. PMID 32658973 DOI: 10.1093/Molbev/Msaa181  0.414
2020 Jo J, Oh J, Park C. Microbial community analysis using high-throughput sequencing technology: a beginner's guide for microbiologists. Journal of Microbiology (Seoul, Korea). 58: 176-192. PMID 32108314 DOI: 10.1007/S12275-020-9525-5  0.353
2019 Jo J, Choi S, Oh J, Lee SG, Choi SY, Kim KK, Park C. Conventionally used reference genes are not outstanding for normalization of gene expression in human cancer research. Bmc Bioinformatics. 20: 245. PMID 31138119 DOI: 10.1186/S12859-019-2809-2  0.395
2019 Hong HH, Lee SG, Jo J, Oh J, Cheon S, Lee HG, Park C. Identification and sequencing of the gene encoding DNA methyltransferase 3 (DNMT3) from sea cucumber, Apostichopus japonicus. Molecular Biology Reports. PMID 31006102 DOI: 10.1007/S11033-019-04821-8  0.43
2019 Park J, Xi H, Park C. The complete mitochondrial genomes from three body color variants of sea cucumbers, Apostichopus japonicus (Selenka, 1867) Mitochondrial Dna Part B. 4: 836-837. DOI: 10.1080/23802359.2019.1567291  0.345
2018 Kim JE, Park JG, Jin KS, Park C, Nam DH. Intraspecific variation and phylogeographic patterns of the grey-capped greenfinch . (Passeriformes: Fringillidae). Mitochondrial Dna. Part B, Resources. 3: 833-834. PMID 33490539 DOI: 10.1080/23802359.2018.1491336  0.383
2018 Kim JE, Park JG, Jin KS, Park C, Nam DH. Complete mitochondrial genome of the Grey-capped Greenfinch subspecies, (Passeriformes: Fringillidae). Mitochondrial Dna. Part B, Resources. 3: 701-702. PMID 33474290 DOI: 10.1080/23802359.2018.1467234  0.378
2018 Vijay N, Park C, Oh J, Jin S, Kern E, Woo Kim H, Zhang J, Park JK. Population genomic analysis reveals contrasting demographic changes of two closely related dolphin species in the last glacial. Molecular Biology and Evolution. PMID 29846663 DOI: 10.1093/Molbev/Msy108  0.355
2018 Kim T, Kern E, Park C, Nadler SA, Bae YJ, Park JK. The bipartite mitochondrial genome of Ruizia karukerae (Rhigonematomorpha, Nematoda). Scientific Reports. 8: 7482. PMID 29749383 DOI: 10.1038/S41598-018-25759-0  0.438
2017 Nam DH, Lee HA, Kim EB, Kim GJ, Kim ES, Park C, Sung HC, Lee DH. Complete mitochondrial genome of a treefrog, (Anura: Hylidae). Mitochondrial Dna. Part B, Resources. 2: 221-222. PMID 33473776 DOI: 10.1080/23802359.2017.1310606  0.395
2017 Rhee DK, Hockman SC, Choi SK, Kim YE, Park C, Manganiello VC, Kim KK. SFPQ, a multifunctional nuclear protein, regulates the transcription of PDE3A. Bioscience Reports. PMID 28743736 DOI: 10.1042/Bsr20170975  0.358
2017 Hong HH, Choi H, Cheon S, Lee HG, Park C. Genome Sequences of Two Shewanella spp. Isolated from the Gut of the Sea Cucumber Apostichopus japonicus (Selenka, 1867). Genome Announcements. 5. PMID 28729274 DOI: 10.1128/Genomea.00674-17  0.374
2017 Jo J, Choi H, Lee SG, Oh J, Lee HG, Park C. Draft Genome Sequences of Pseudoalteromonas tetraodonis CSB01KR and Pseudoalteromonas lipolytica CSB02KR, Isolated from the Gut of the Sea Cucumber Apostichopus japonicus. Genome Announcements. 5. PMID 28705978 DOI: 10.1128/Genomea.00627-17  0.35
2017 Choi S, Park C, Kim KE, Kim KK. An in vitro technique to identify the RNA binding-site sequences for RNA-binding proteins. Biotechniques. 63: 28-33. PMID 28701145 DOI: 10.2144/000114567  0.306
2017 Yang JR, Maclean CJ, Park C, Zhao H, Zhang J. Intra- and inter-specific variations of gene expression levels in yeast are largely neutral. Molecular Biology and Evolution. PMID 28575451 DOI: 10.1093/Molbev/Msx171  0.447
2017 Jo J, Oh J, Lee HG, Hong HH, Lee SG, Cheon S, Kern EM, Jin S, Cho SJ, Park JK, Park C. Draft genome of the sea cucumber Apostichopus japonicus and genetic polymorphism among color variants. Gigascience. 6: 1-6. PMID 28369350 DOI: 10.1093/Gigascience/Giw006  0.387
2016 Kim J, Kern E, Kim T, Sim M, Kim J, Kim Y, Park C, Nadler SA, Park JK. Phylogenetic analysis of two Plectus mitochondrial genomes (Nematoda: Plectida) supports a sister group relationship between Plectida and Rhabditida within Chromadorea. Molecular Phylogenetics and Evolution. PMID 27746318 DOI: 10.1016/J.Ympev.2016.10.010  0.415
2016 Lee HG, Jo J, Hong HH, Kim KK, Park JK, Cho SJ, Park C. State-of-the-art housekeeping proteins for quantitative western blotting: Revisiting the first draft of the human proteome. Proteomics. PMID 27125885 DOI: 10.1002/Pmic.201500344  0.325
2016 Jo J, Park J, Lee HG, Kern EM, Cheon S, Jin S, Park JK, Cho SJ, Park C. Comparative transcriptome analysis of three color variants of the sea cucumber Apostichopus japonicus. Marine Genomics. PMID 27105969 DOI: 10.1016/J.Margen.2016.03.009  0.391
2016 Kim YO, Yang JH, Park C, Kim SK, Kim MK, Shin MG, Woo YJ. A novel PIGA mutation in a family with X-linked, early-onset epileptic encephalopathy. Brain & Development. PMID 26923721 DOI: 10.1016/J.Braindev.2016.02.008  0.349
2016 Jo J, Park C, Kim M, Park C. Phylogenetic Analysis of the Three Color Variations of the Sea Cucumber Apostichopus japonicus Journal of Aquaculture Research and Development. 7: 1-4. DOI: 10.4172/2155-9546.1000418  0.362
2016 Gazi M, Kim J, García-Varela M, Park C, Littlewood DTJ, Park JK. Mitogenomic phylogeny of Acanthocephala reveals novel Class relationships Zoologica Scripta. 45: 437-454. DOI: 10.1111/Zsc.12160  0.374
2015 Guo X, Zhao D, Jung D, Li Q, Kong LF, Ni G, Nakano T, Matsukuma A, Kim S, Park C, Lee HJ, Park JK. Correction: Phylogeography of the Rock Shell Thais clavigera (Mollusca): Evidence for Long-Distance Dispersal in the Northwestern Pacific. Plos One. 10: e0135540. PMID 26252216 DOI: 10.1371/Journal.Pone.0135540  0.306
2015 Wolf G, Yang P, Füchtbauer AC, Füchtbauer EM, Silva AM, Park C, Wu W, Nielsen AL, Pedersen FS, Macfarlan TS. The KRAB zinc finger protein ZFP809 is required to initiate epigenetic silencing of endogenous retroviruses. Genes & Development. 29: 538-54. PMID 25737282 DOI: 10.1101/Gad.252767.114  0.316
2015 Kim J, Lee SH, Gazi M, Kim T, Jung D, Chun JY, Kim S, Seo TK, Park C, Baldwin JG, Nadler SA, Park JK. Mitochondrial genomes advance phylogenetic hypotheses for Tylenchina (Nematoda: Chromadorea) Zoologica Scripta. 44: 446-462. DOI: 10.1111/Zsc.12112  0.39
2014 Kim T, Kim J, Cho S, Min GS, Park C, Carreno RA, Nadler SA, Park JK. Phylogeny of Rhigonematomorpha based on the complete mitochondrial genome of Rhigonema thysanophora (Nematoda: Chromadorea) Zoologica Scripta. 43: 289-303. DOI: 10.1111/Zsc.12047  0.443
2013 Park C, Chen X, Yang JR, Zhang J. Differential requirements for mRNA folding partially explain why highly expressed proteins evolve slowly. Proceedings of the National Academy of Sciences of the United States of America. 110: E678-86. PMID 23382244 DOI: 10.1073/Pnas.1218066110  0.371
2012 Park C, Qian W, Zhang J. Genomic evidence for elevated mutation rates in highly expressed genes. Embo Reports. 13: 1123-9. PMID 23146897 DOI: 10.1038/Embor.2012.165  0.404
2012 Park C, Zhang J. High expression hampers horizontal gene transfer. Genome Biology and Evolution. 4: 523-32. PMID 22436996 DOI: 10.1093/Gbe/Evs030  0.434
2011 Lombard Z, Park C, Makova KD, Ramsay M. A computational approach to candidate gene prioritization for X-linked mental retardation using annotation-based binary filtering and motif-based linear discriminatory analysis. Biology Direct. 6: 30. PMID 21668950 DOI: 10.1186/1745-6150-6-30  0.632
2010 Park C, Carrel L, Makova KD. Strong purifying selection at genes escaping X chromosome inactivation. Molecular Biology and Evolution. 27: 2446-50. PMID 20534706 DOI: 10.1093/Molbev/Msq143  0.607
2009 Park C, Makova KD. Coding region structural heterogeneity and turnover of transcription start sites contribute to divergence in expression between duplicate genes. Genome Biology. 10: R10. PMID 19175934 DOI: 10.1186/Gb-2009-10-1-R10  0.642
2006 Carrel L, Park C, Tyekucheva S, Dunn J, Chiaromonte F, Makova KD. Genomic environment predicts expression patterns on the human inactive X chromosome. Plos Genetics. 2: e151. PMID 17009873 DOI: 10.1371/Journal.Pgen.0020151  0.634
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