| Year |
Citation |
Score |
| 2020 |
Sha Y, Wang S, Zhou P, Nie Q. Inference and multiscale model of epithelial-to-mesenchymal transition via single-cell transcriptomic data. Nucleic Acids Research. 48: 9505-9520. PMID 32870263 DOI: 10.1093/Nar/Gkaa725 |
0.356 |
|
| 2020 |
Wang S, Drummond ML, Guerrero-Juarez CF, Tarapore E, MacLean AL, Stabell AR, Wu SC, Gutierrez G, That BT, Benavente CA, Nie Q, Atwood SX. Single cell transcriptomics of human epidermis identifies basal stem cell transition states. Nature Communications. 11: 4239. PMID 32843640 DOI: 10.1038/S41467-020-18075-7 |
0.361 |
|
| 2020 |
Sheng X, Lin Z, Lv C, Shao C, Bi X, Deng M, Xu J, Guerrero-Juarez CF, Li M, Wu X, Zhao R, Yang X, Li G, Liu X, Wang Q, ... Nie Q, et al. Cycling Stem Cells Are Radioresistant and Regenerate the Intestine. Cell Reports. 32: 107952. PMID 32726617 DOI: 10.1016/J.Celrep.2020.107952 |
0.31 |
|
| 2020 |
Zhu Y, Qiu Y, Chen W, Nie Q, Lander AD. Scaling a Dpp Morphogen Gradient through Feedback Control of Receptors and Co-receptors. Developmental Cell. 53: 724-739.e14. PMID 32574592 DOI: 10.1016/J.Devcel.2020.05.029 |
0.328 |
|
| 2020 |
Cang Z, Nie Q. Inferring spatial and signaling relationships between cells from single cell transcriptomic data. Nature Communications. 11: 2084. PMID 32350282 DOI: 10.1038/S41467-020-15968-5 |
0.348 |
|
| 2020 |
Haensel D, Jin S, Sun P, Cinco R, Dragan M, Nguyen Q, Cang Z, Gong Y, Vu R, MacLean AL, Kessenbrock K, Gratton E, Nie Q, Dai X. Defining Epidermal Basal Cell States during Skin Homeostasis and Wound Healing Using Single-Cell Transcriptomics. Cell Reports. 30: 3932-3947.e6. PMID 32187560 DOI: 10.1016/J.Celrep.2020.02.091 |
0.365 |
|
| 2020 |
Kashgari G, Meinecke L, Gordon W, Ruiz B, Yang J, Ma AL, Xie Y, Ho H, Plikus MV, Nie Q, Jester JV, Andersen B. Epithelial Migration and Non-adhesive Periderm Are Required for Digit Separation during Mammalian Development. Developmental Cell. PMID 32109382 DOI: 10.1016/J.Devcel.2020.01.032 |
0.304 |
|
| 2020 |
Lander AD, Nie Q, Sanchez-Tapia C, Simonyan A, Wan FYM. Regulatory Feedback on Receptor and Non-receptor Synthesis for Robust Signaling. Developmental Dynamics : An Official Publication of the American Association of Anatomists. PMID 32034817 DOI: 10.1002/Dvdy.160 |
0.365 |
|
| 2020 |
Jin S, Zhang L, Nie Q. scAI: an unsupervised approach for the integrative analysis of parallel single-cell transcriptomic and epigenomic profiles. Genome Biology. 21: 25. PMID 32014031 DOI: 10.1186/S13059-020-1932-8 |
0.35 |
|
| 2020 |
Xie J, Yang F, Wang J, Karikomi M, Yin Y, Sun J, Wen T, Nie Q. DNF: A differential network flow method to identify rewiring drivers for gene regulatory networks Neurocomputing. 410: 202-210. DOI: 10.1016/J.Neucom.2020.05.028 |
0.323 |
|
| 2019 |
Qiu Y, Chen W, Nie Q. A HYBRID METHOD FOR STIFF REACTION-DIFFUSION EQUATIONS. Discrete and Continuous Dynamical Systems. Series B. 24: 6387-6417. PMID 32405272 DOI: 10.3934/Dcdsb.2019144 |
0.358 |
|
| 2019 |
Qiu Y, Chen W, Nie Q. STOCHASTIC DYNAMICS OF CELL LINEAGE IN TISSUE HOMEOSTASIS. Discrete and Continuous Dynamical Systems. Series B. 24: 3971-3994. PMID 32269502 DOI: 10.3934/Dcdsb.2018339 |
0.306 |
|
| 2019 |
Zhang J, Nie Q, Zhou T. Revealing Dynamic Mechanisms of Cell Fate Decisions From Single-Cell Transcriptomic Data. Frontiers in Genetics. 10: 1280. PMID 31921315 DOI: 10.3389/Fgene.2019.01280 |
0.374 |
|
| 2019 |
Zheng X, Jin S, Nie Q, Zou X. scRCMF: Identification of cell subpopulations and transition states from single cell transcriptomes. Ieee Transactions On Bio-Medical Engineering. PMID 31449003 DOI: 10.1109/Tbme.2019.2937228 |
0.341 |
|
| 2019 |
Nie Q, Plikus MV. Equal opportunities in stemness. Nature Cell Biology. PMID 31358967 DOI: 10.1038/S41556-019-0366-6 |
0.313 |
|
| 2019 |
Wang S, Karikomi M, MacLean AL, Nie Q. Cell lineage and communication network inference via optimization for single-cell transcriptomics. Nucleic Acids Research. PMID 30923815 DOI: 10.1093/Nar/Gkz204 |
0.365 |
|
| 2019 |
Wang Y, Guerrero-Juarez CF, Qiu Y, Du H, Chen W, Figueroa S, Plikus MV, Nie Q. A multiscale hybrid mathematical model of epidermal-dermal interactions during skin wound healing. Experimental Dermatology. PMID 30801791 DOI: 10.1111/Exd.13909 |
0.306 |
|
| 2019 |
Guerrero-Juarez CF, Dedhia PH, Jin S, Ruiz-Vega R, Ma D, Liu Y, Yamaga K, Shestova O, Gay DL, Yang Z, Kessenbrock K, Nie Q, Pear WS, Cotsarelis G, Plikus MV. Single-cell analysis reveals fibroblast heterogeneity and myeloid-derived adipocyte progenitors in murine skin wounds. Nature Communications. 10: 650. PMID 30737373 DOI: 10.1038/S41467-018-08247-X |
0.313 |
|
| 2019 |
Cai AQ, Peng Y, Wells J, Dai X, Nie Q. Multi-scale Modelling for Threshold Dependent Differentiation. Mathematical Modelling of Natural Phenomena. 4: 103-117. PMID 20622931 DOI: 10.1051/Mmnp/20094403 |
0.352 |
|
| 2019 |
Rackauckas C, Nie Q. Confederated modular differential equation APIs for accelerated algorithm development and benchmarking Advances in Engineering Software. 132: 1-6. DOI: 10.1016/J.Advengsoft.2019.03.009 |
0.313 |
|
| 2018 |
Sharma PP, MacLean AL, Meinecke L, Clouthier DE, Nie Q, Schilling TF. Transcriptomics reveals complex kinetics of dorsal-ventral patterning gene expression in the mandibular arch. Genesis (New York, N.Y. : 2000). e23275. PMID 30561090 DOI: 10.1002/Dvg.23275 |
0.321 |
|
| 2018 |
Sha Y, Haensel D, Gutierrez G, Du H, Dai X, Nie Q. Intermediate cell states in epithelial-to-mesenchymal transition. Physical Biology. PMID 30560804 DOI: 10.1088/1478-3975/Aaf928 |
0.307 |
|
| 2018 |
Meinecke L, Sharma PP, Du H, Zhang L, Nie Q, Schilling TF. Modeling craniofacial development reveals spatiotemporal constraints on robust patterning of the mandibular arch. Plos Computational Biology. 14: e1006569. PMID 30481168 DOI: 10.1371/Journal.Pcbi.1006569 |
0.347 |
|
| 2018 |
MacLean AL, Hong T, Nie Q. Exploring intermediate cell states through the lens of single cells. Current Opinion in Systems Biology. 9: 32-41. PMID 30450444 DOI: 10.1016/J.Coisb.2018.02.009 |
0.331 |
|
| 2018 |
Rackauckas C, Schilling T, Nie Q. Mean-Independent Noise Control of Cell Fates via Intermediate States. Iscience. 3: 11-20. PMID 30428314 DOI: 10.1016/J.Isci.2018.04.002 |
0.375 |
|
| 2018 |
Haensel D, Sun P, MacLean AL, Ma X, Zhou Y, Stemmler MP, Brabletz S, Berx G, Plikus MV, Nie Q, Brabletz T, Dai X. An Ovol2-Zeb1 transcriptional circuit regulates epithelial directional migration and proliferation. Embo Reports. PMID 30413481 DOI: 10.15252/Embr.201846273 |
0.345 |
|
| 2018 |
Yu P, Nie Q, Tang C, Zhang L. Nanog induced intermediate state in regulating stem cell differentiation and reprogramming. Bmc Systems Biology. 12: 22. PMID 29486740 DOI: 10.1186/S12918-018-0552-3 |
0.365 |
|
| 2018 |
Du H, Wang Y, Haensel D, Lee B, Dai X, Nie Q. Multiscale modeling of layer formation in epidermis. Plos Computational Biology. 14: e1006006. PMID 29481568 DOI: 10.1371/Journal.Pcbi.1006006 |
0.392 |
|
| 2018 |
Jin S, MacLean AL, Peng T, Nie Q. scEpath: Energy landscape-based inference of transition probabilities and cellular trajectories from single-cell transcriptomic data. Bioinformatics (Oxford, England). PMID 29415263 DOI: 10.1093/Bioinformatics/Bty058 |
0.307 |
|
| 2018 |
Drummond M, Wang S, MacLean A, Gutierrez G, Nie Q, Atwood S. 1337 Single cell transcriptome profiling of human interfollicular epidermis reveals robust heterogeneity and divergent differentiation lineages Journal of Investigative Dermatology. 138: S227. DOI: 10.1016/J.Jid.2018.03.1354 |
0.331 |
|
| 2017 |
Rackauckas C, Nie Q. ADAPTIVE METHODS FOR STOCHASTIC DIFFERENTIAL EQUATIONS VIA NATURAL EMBEDDINGS AND REJECTION SAMPLING WITH MEMORY. Discrete and Continuous Dynamical Systems. Series B. 22: 2731-2761. PMID 29527134 DOI: 10.3934/Dcdsb.2017133 |
0.321 |
|
| 2017 |
Peng T, Liu L, MacLean AL, Wong CW, Zhao W, Nie Q. A mathematical model of mechanotransduction reveals how mechanical memory regulates mesenchymal stem cell fate decisions. Bmc Systems Biology. 11: 55. PMID 28511648 DOI: 10.1186/S12918-017-0429-X |
0.302 |
|
| 2017 |
Wang Q, Holmes WR, Sosnik J, Schilling T, Nie Q. Cell Sorting and Noise-Induced Cell Plasticity Coordinate to Sharpen Boundaries between Gene Expression Domains. Plos Computational Biology. 13: e1005307. PMID 28135279 DOI: 10.1371/Journal.Pcbi.1005307 |
0.337 |
|
| 2017 |
Holmes WR, Reyes de Mochel NS, Wang Q, Du H, Peng T, Chiang M, Cinquin O, Cho K, Nie Q. Gene Expression Noise Enhances Robust Organization of the Early Mammalian Blastocyst. Plos Computational Biology. 13: e1005320. PMID 28114387 DOI: 10.1371/Journal.Pcbi.1005320 |
0.353 |
|
| 2017 |
Li A, Figueroa S, Jiang TX, Wu P, Widelitz R, Nie Q, Chuong CM. Diverse feather shape evolution enabled by coupling anisotropic signalling modules with self-organizing branching programme. Nature Communications. 8: ncomms14139. PMID 28106042 DOI: 10.1038/Ncomms14139 |
0.341 |
|
| 2016 |
Ta CH, Nie Q, Hong T. Controlling Stochasticity in Epithelial-Mesenchymal Transition Through Multiple Intermediate Cellular States. Discrete and Continuous Dynamical Systems. Series B. 21: 2275-2291. PMID 29497351 DOI: 10.3934/Dcdsb.2016047 |
0.356 |
|
| 2016 |
Lo WC, Zheng L, Nie Q. A hybrid continuous-discrete method for stochastic reaction-diffusion processes. Royal Society Open Science. 3: 160485. PMID 27703710 DOI: 10.1098/Rsos.160485 |
0.349 |
|
| 2016 |
Chen W, Nie Q, Yi TM, Chou CS. Modelling of Yeast Mating Reveals Robustness Strategies for Cell-Cell Interactions. Plos Computational Biology. 12: e1004988. PMID 27404800 DOI: 10.1371/Journal.Pcbi.1004988 |
0.383 |
|
| 2016 |
Li C, Hong T, Nie Q. Quantifying the landscape and kinetic paths for epithelial-mesenchymal transition from a core circuit. Physical Chemistry Chemical Physics : Pccp. PMID 27328302 DOI: 10.1039/C6Cp03174A |
0.315 |
|
| 2016 |
Schilling TF, Sosnik J, Nie Q. Visualizing retinoic acid morphogen gradients. Methods in Cell Biology. 133: 139-63. PMID 27263412 DOI: 10.1016/Bs.Mcb.2016.03.003 |
0.365 |
|
| 2016 |
Zhang J, Nie Q, Zhou T. A moment-convergence method for stochastic analysis of biochemical reaction networks. The Journal of Chemical Physics. 144: 194109. PMID 27208938 DOI: 10.1063/1.4950767 |
0.384 |
|
| 2016 |
Sosnik J, Zheng L, Rackauckas CV, Digman M, Gratton E, Nie Q, Schilling TF. Noise modulation in retinoic acid signaling sharpens segmental boundaries of gene expression in the embryonic zebrafish hindbrain. Elife. 5. PMID 27067377 DOI: 10.7554/Elife.14034 |
0.313 |
|
| 2015 |
Cinquin A, Zheng L, Taylor PH, Paz A, Zhang L, Chiang M, Snow JJ, Nie Q, Cinquin O. Semi-permeable Diffusion Barriers Enhance Patterning Robustness in the C. elegans Germline. Developmental Cell. 35: 405-417. PMID 26609956 DOI: 10.1016/J.Devcel.2015.10.027 |
0.385 |
|
| 2015 |
Hong T, Watanabe K, Ta CH, Villarreal-Ponce A, Nie Q, Dai X. An Ovol2-Zeb1 Mutual Inhibitory Circuit Governs Bidirectional and Multi-step Transition between Epithelial and Mesenchymal States. Plos Computational Biology. 11: e1004569. PMID 26554584 DOI: 10.1371/Journal.Pcbi.1004569 |
0.367 |
|
| 2015 |
Du H, Nie Q, Holmes WR. The Interplay between Wnt Mediated Expansion and Negative Regulation of Growth Promotes Robust Intestinal Crypt Structure and Homeostasis. Plos Computational Biology. 11: e1004285. PMID 26288152 DOI: 10.1371/Journal.Pcbi.1004285 |
0.404 |
|
| 2015 |
Chou CS, Moore TI, Nie Q, Yi TM. Alternative cell polarity behaviours arise from changes in G-protein spatial dynamics. Iet Systems Biology. 9: 52-63. PMID 26029251 DOI: 10.1049/Iet-Syb.2013.0018 |
0.342 |
|
| 2015 |
Ta C, Wang D, Nie Q. An Integration Factor Method for Stochastic and Stiff Reaction-Diffusion Systems. Journal of Computational Physics. 295: 505-522. PMID 25983341 DOI: 10.1016/J.Jcp.2015.04.028 |
0.618 |
|
| 2015 |
Hong T, Fung ES, Zhang L, Huynh G, Monuki ES, Nie Q. Semi-adaptive response and noise attenuation in bone morphogenetic protein signalling. Journal of the Royal Society, Interface / the Royal Society. 12. PMID 25972436 DOI: 10.1098/Rsif.2015.0258 |
0.334 |
|
| 2015 |
Wang D, Chen W, Nie Q. Semi-implicit Integration Factor Methods on Sparse Grids for High-Dimensional Systems. Journal of Computational Physics. 292: 43-55. PMID 25897178 DOI: 10.1016/J.Jcp.2015.03.033 |
0.624 |
|
| 2015 |
Lo WC, Zhou S, Wan FY, Lander AD, Nie Q. Robust and precise morphogen-mediated patterning: trade-offs, constraints and mechanisms. Journal of the Royal Society, Interface / the Royal Society. 12: 20141041. PMID 25551154 DOI: 10.1098/Rsif.2014.1041 |
0.62 |
|
| 2015 |
Ta C, Wang D, Nie Q. An integration factor method for stochastic and stiff reaction-diffusion systems Journal of Computational Physics. 295: 505-522. DOI: 10.1016/j.jcp.2015.04.028 |
0.561 |
|
| 2014 |
Gord A, Holmes WR, Dai X, Nie Q. Computational modelling of epidermal stratification highlights the importance of asymmetric cell division for predictable and robust layer formation. Journal of the Royal Society, Interface / the Royal Society. 11. PMID 25100322 DOI: 10.1098/Rsif.2014.0631 |
0.348 |
|
| 2014 |
Lee B, Villarreal-Ponce A, Fallahi M, Ovadia J, Sun P, Yu QC, Ito S, Sinha S, Nie Q, Dai X. Transcriptional mechanisms link epithelial plasticity to adhesion and differentiation of epidermal progenitor cells. Developmental Cell. 29: 47-58. PMID 24735878 DOI: 10.1016/J.Devcel.2014.03.005 |
0.629 |
|
| 2014 |
Holmes WR, Nie Q. Interactions and tradeoffs between cell recruitment, proliferation, and differentiation affect CNS regeneration. Biophysical Journal. 106: 1528-36. PMID 24703314 DOI: 10.1016/J.Bpj.2014.02.010 |
0.33 |
|
| 2014 |
Lei J, Levin SA, Nie Q. Mathematical model of adult stem cell regeneration with cross-talk between genetic and epigenetic regulation. Proceedings of the National Academy of Sciences of the United States of America. 111: E880-7. PMID 24501127 DOI: 10.1073/Pnas.1324267111 |
0.358 |
|
| 2014 |
Ovadia J, Nie Q. Numerical Methods for Two-Dimensional Stem Cell Tissue Growth. Journal of Scientific Computing. 58: 149-175. PMID 24415847 DOI: 10.1007/S10915-013-9728-6 |
0.653 |
|
| 2014 |
Wang D, Zhang L, Nie Q. Array-representation Integration Factor Method for High-dimensional Systems. Journal of Computational Physics. 258. PMID 24415797 DOI: 10.1016/J.Jcp.2013.11.002 |
0.629 |
|
| 2014 |
Zheng Z, Christley S, Chiu WT, Blitz IL, Xie X, Cho KW, Nie Q. Inference of the Xenopus tropicalis embryonic regulatory network and spatial gene expression patterns. Bmc Systems Biology. 8: 3. PMID 24397936 DOI: 10.1186/1752-0509-8-3 |
0.347 |
|
| 2013 |
Lei J, Wang D, Song Y, Nie Q, Wan FY. ROBUSTNESS OF MORPHOGEN GRADIENTS WITH "BUCKET BRIGADE" TRANSPORT THROUGH MEMBRANE-ASSOCIATED NON-RECEPTORS. Discrete and Continuous Dynamical Systems. Series B. 18. PMID 24244111 DOI: 10.3934/Dcdsb.2013.18.721 |
0.61 |
|
| 2013 |
Li A, Chen M, Jiang TX, Wu P, Nie Q, Widelitz R, Chuong CM. Shaping organs by a wingless-int/Notch/nonmuscle myosin module which orients feather bud elongation. Proceedings of the National Academy of Sciences of the United States of America. 110: E1452-61. PMID 23576731 DOI: 10.1073/Pnas.1219813110 |
0.367 |
|
| 2013 |
Zhang J, Nie Q, He M, Zhou T. An effective method for computing the noise in biochemical networks. The Journal of Chemical Physics. 138: 084106. PMID 23464139 DOI: 10.1063/1.4792444 |
0.31 |
|
| 2013 |
Ovadia J, Nie Q. Stem cell niche structure as an inherent cause of undulating epithelial morphologies. Biophysical Journal. 104: 237-46. PMID 23332076 DOI: 10.1016/J.Bpj.2012.11.3807 |
0.625 |
|
| 2012 |
Chou CS, Moore TI, Chang SD, Nie Q, Yi TM. Signaling regulated endocytosis and exocytosis lead to mating pheromone concentration dependent morphologies in yeast. Febs Letters. 586: 4208-14. PMID 23108052 DOI: 10.1016/J.Febslet.2012.10.024 |
0.333 |
|
| 2012 |
Zhang L, Radtke K, Zheng L, Cai AQ, Schilling TF, Nie Q. Noise drives sharpening of gene expression boundaries in the zebrafish hindbrain. Molecular Systems Biology. 8: 613. PMID 23010996 DOI: 10.1038/Msb.2012.45 |
0.311 |
|
| 2012 |
Zhang L, Lander AD, Nie Q. A reaction-diffusion mechanism influences cell lineage progression as a basis for formation, regeneration, and stability of intestinal crypts. Bmc Systems Biology. 6: 93. PMID 22849824 DOI: 10.1186/1752-0509-6-93 |
0.433 |
|
| 2012 |
Lo WC, Chen L, Wang M, Nie Q. A Robust and Efficient Method for Steady State Patterns in Reaction-Diffusion Systems. Journal of Computational Physics. 231: 5062-5077. PMID 22773849 DOI: 10.1016/J.Jcp.2012.04.006 |
0.62 |
|
| 2012 |
Chan C, Liu X, Wang L, Bardwell L, Nie Q, Enciso G. Protein scaffolds can enhance the bistability of multisite phosphorylation systems. Plos Computational Biology. 8: e1002551. PMID 22737061 DOI: 10.1371/Journal.Pcbi.1002551 |
0.495 |
|
| 2012 |
Zhou S, Lo WC, Suhalim JL, Digman MA, Gratton E, Nie Q, Lander AD. Free extracellular diffusion creates the Dpp morphogen gradient of the Drosophila wing disc. Current Biology : Cb. 22: 668-75. PMID 22445299 DOI: 10.1016/J.Cub.2012.02.065 |
0.607 |
|
| 2011 |
Lei J, Wan FY, Lander AD, Nie Q. ROBUSTNESS OF SIGNALING GRADIENT IN DROSOPHILA WING IMAGINAL DISC. Discrete and Continuous Dynamical Systems. Series B. 16: 835-866. PMID 24098092 DOI: 10.3934/Dcdsb.2011.16.835 |
0.408 |
|
| 2011 |
Zheng Z, Chou CS, Yi TM, Nie Q. Mathematical analysis of steady-state solutions in compartment and continuum models of cell polarization. Mathematical Biosciences and Engineering : Mbe. 8: 1135-68. PMID 21936604 DOI: 10.3934/Mbe.2011.8.1135 |
0.354 |
|
| 2011 |
Lander AD, Nie Q, Vargas B, Wan FY. Size-normalized Robustness of Dpp Gradient in Drosophila Wing Imaginal Disc. Journal of Mechanics of Materials and Structures. 6: 321-350. PMID 21841941 DOI: 10.2140/Jomms.2011.6.321 |
0.363 |
|
| 2011 |
Zhao S, Ovadia J, Liu X, Zhang YT, Nie Q. Operator Splitting Implicit Integration Factor Methods for Stiff Reaction-Diffusion-Advection Systems. Journal of Computational Physics. 230: 5996-6009. PMID 21666863 DOI: 10.1016/J.Jcp.2011.04.009 |
0.719 |
|
| 2010 |
Chou CS, Lo WC, Gokoffski KK, Zhang YT, Wan FY, Lander AD, Calof AL, Nie Q. Spatial dynamics of multistage cell lineages in tissue stratification. Biophysical Journal. 99: 3145-54. PMID 21081061 DOI: 10.1016/J.Bpj.2010.09.034 |
0.636 |
|
| 2010 |
Haney S, Bardwell L, Nie Q. Ultrasensitive responses and specificity in cell signaling. Bmc Systems Biology. 4: 119. PMID 20735856 DOI: 10.1186/1752-0509-4-119 |
0.741 |
|
| 2010 |
Christley S, Lee B, Dai X, Nie Q. Integrative multicellular biological modeling: a case study of 3D epidermal development using GPU algorithms. Bmc Systems Biology. 4: 107. PMID 20696053 DOI: 10.1186/1752-0509-4-107 |
0.335 |
|
| 2010 |
Liu X, Nie Q. Compact integration factor methods for complex domains and adaptive mesh refinement. Journal of Computational Physics. 229: 5692-5706. PMID 20543883 DOI: 10.1016/J.Jcp.2010.04.003 |
0.374 |
|
| 2009 |
Lander AD, Nie Q, Wan FY, Zhang YT. Localized Ectopic Expression of Dpp Receptors in a Drosophila Embryo. Studies in Applied Mathematics (Cambridge, Mass.). 123: 175-214. PMID 20160891 DOI: 10.1111/J.1467-9590.2009.00450.X |
0.349 |
|
| 2009 |
Lander AD, Lo WC, Nie Q, Wan FY. The measure of success: constraints, objectives, and tradeoffs in morphogen-mediated patterning. Cold Spring Harbor Perspectives in Biology. 1: a002022. PMID 20066078 DOI: 10.1101/Cshperspect.A002022 |
0.589 |
|
| 2009 |
Wells J, Lee B, Cai AQ, Karapetyan A, Lee WJ, Rugg E, Sinha S, Nie Q, Dai X. Ovol2 suppresses cell cycling and terminal differentiation of keratinocytes by directly repressing c-Myc and Notch1. The Journal of Biological Chemistry. 284: 29125-35. PMID 19700410 DOI: 10.1074/Jbc.M109.008847 |
0.384 |
|
| 2009 |
Lo WC, Chou CS, Gokoffski KK, Wan FY, Lander AD, Calof AL, Nie Q. Feedback regulation in multistage cell lineages. Mathematical Biosciences and Engineering : Mbe. 6: 59-82. PMID 19292508 DOI: 10.3934/Mbe.2009.6.59 |
0.636 |
|
| 2009 |
Lander AD, Gokoffski KK, Wan FY, Nie Q, Calof AL. Cell lineages and the logic of proliferative control. Plos Biology. 7: e15. PMID 19166268 DOI: 10.1371/Journal.Pbio.1000015 |
0.333 |
|
| 2009 |
Liu X, Nie Q. Spatially-localized scaffold proteins may facilitate to transmit long-range signals Acta Mathematica Scientia. 29: 1657-1669. DOI: 10.1016/S0252-9602(10)60008-2 |
0.365 |
|
| 2009 |
Hollenbeck PL, Beites C, Kim J, Lovell-Badge R, Christley S, Nie Q, Lander A, Calof A. A follistatin-BMP7 feedback circuit controls taste papillae development and patterning in mouse tongue Developmental Biology. 331: 527-528. DOI: 10.1016/J.Ydbio.2009.05.525 |
0.305 |
|
| 2008 |
Chou CS, Nie Q, Yi TM. Modeling robustness tradeoffs in yeast cell polarization induced by spatial gradients. Plos One. 3: e3103. PMID 21267054 DOI: 10.1371/Journal.Pone.0003103 |
0.374 |
|
| 2008 |
Nie Q, Wan FY, Zhang YT, Liu XF. Compact integration factor methods in high spatial dimensions. Journal of Computational Physics. 227: 5238-5255. PMID 19809596 DOI: 10.1016/J.Jcp.2008.01.050 |
0.314 |
|
| 2008 |
Moore TI, Chou CS, Nie Q, Jeon NL, Yi TM. Robust spatial sensing of mating pheromone gradients by yeast cells. Plos One. 3: e3865. PMID 19052645 DOI: 10.1371/Journal.Pone.0003865 |
0.354 |
|
| 2008 |
Chou S, Zhao S, Song Y, Liu H, Nie Q. Fus3-triggered Tec1 degradation modulates mating transcriptional output during the pheromone response. Molecular Systems Biology. 4: 212. PMID 18682702 DOI: 10.1038/Msb.2008.47 |
0.584 |
|
| 2008 |
Iron D, Syed A, Theisen H, Lukacsovich T, Naghibi M, Marsh LJ, Wan FY, Nie Q. The role of feedback in the formation of morphogen territories. Mathematical Biosciences and Engineering : Mbe. 5: 277-98. PMID 18613734 DOI: 10.3934/Mbe.2008.5.277 |
0.342 |
|
| 2007 |
Zhang YT, Lander AD, Nie Q. Computational analysis of BMP gradients in dorsal-ventral patterning of the zebrafish embryo. Journal of Theoretical Biology. 248: 579-89. PMID 17673236 DOI: 10.1016/J.Jtbi.2007.05.026 |
0.328 |
|
| 2007 |
Bardwell L, Zou X, Nie Q, Komarova NL. Mathematical models of specificity in cell signaling. Biophysical Journal. 92: 3425-41. PMID 17325015 DOI: 10.1529/Biophysj.106.090084 |
0.348 |
|
| 2007 |
Lander AD, Nie Q, Wan FY. Membrane-associated non-receptors and morphogen gradients. Bulletin of Mathematical Biology. 69: 33-54. PMID 17054000 DOI: 10.1007/S11538-006-9152-2 |
0.317 |
|
| 2007 |
Chou C, Zhang Y, Zhao R, Nie Q. Numerical methods for stiff reaction-diffusion systems Discrete and Continuous Dynamical Systems-Series B. 7: 515-525. DOI: 10.3934/Dcdsb.2007.7.515 |
0.354 |
|
| 2007 |
Yi T, Chen S, Chou C, Nie Q. Modeling Yeast Cell Polarization Induced by Pheromone Gradients Journal of Statistical Physics. 128: 193-207. DOI: 10.1007/S10955-007-9285-1 |
0.354 |
|
| 2006 |
Nie Q, Zhang Y, Zhao R. Efficient semi-implicit schemes for stiff systems Journal of Computational Physics. 214: 521-537. DOI: 10.1016/J.Jcp.2005.09.030 |
0.34 |
|
| 2006 |
Lander AD, Nie Q, Wan FYM. Internalization and end flux in morphogen gradient formation Journal of Computational and Applied Mathematics. 190: 232-251. DOI: 10.1016/J.Cam.2004.11.054 |
0.361 |
|
| 2005 |
Lou Y, Nie Q, Wan FY. EFFECTS OF SOG ON DPP-RECEPTOR BINDING. Siam Journal On Applied Mathematics. 65: 1748-1771. PMID 17377624 DOI: 10.1137/S0036139903433219 |
0.334 |
|
| 2005 |
Komarova NL, Zou X, Nie Q, Bardwell L. A theoretical framework for specificity in cell signaling. Molecular Systems Biology. 1: 2005.0023. PMID 16729058 DOI: 10.1038/Msb4100031 |
0.319 |
|
| 2005 |
Mizutani CM, Nie Q, Wan FY, Zhang YT, Vilmos P, Sousa-Neves R, Bier E, Marsh JL, Lander AD. Formation of the BMP activity gradient in the Drosophila embryo. Developmental Cell. 8: 915-24. PMID 15935780 DOI: 10.1016/J.Devcel.2005.04.009 |
0.337 |
|
| 2002 |
Lander AD, Nie Q, Wan FY. Do morphogen gradients arise by diffusion? Developmental Cell. 2: 785-96. PMID 12062090 DOI: 10.1016/S1534-5807(02)00179-X |
0.35 |
|
| 2000 |
Leo PH, Lowengrub JS, Nie Q. Microstructural evolution in orthotropic elastic media Journal of Computational Physics. 157: 44-88. DOI: 10.1006/Jcph.1999.6359 |
0.304 |
|
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