| Year |
Citation |
Score |
| 2024 |
Draizen EJ, Readey J, Mura C, Bourne PE. Prop3D: A flexible, Python-based platform for machine learning with protein structural properties and biophysical data. Bmc Bioinformatics. 25: 11. PMID 38177985 DOI: 10.1186/s12859-023-05586-5 |
0.774 |
|
| 2023 |
Mura C, Bourne PE. Ten simple rules for serving as an editor. Plos Computational Biology. 19: e1010911. PMID 36862619 DOI: 10.1371/journal.pcbi.1010911 |
0.539 |
|
| 2023 |
Cai T, Xie L, Zhang S, Chen M, He D, Badkul A, Liu Y, Namballa HK, Dorogan M, Harding WW, Mura C, Bourne PE, Xie L. End-to-end sequence-structure-function meta-learning predicts genome-wide chemical-protein interactions for dark proteins. Plos Computational Biology. 19: e1010851. PMID 36652496 DOI: 10.1371/journal.pcbi.1010851 |
0.639 |
|
| 2022 |
Bourne PE, Draizen EJ, Mura C. The curse of the protein ribbon diagram. Plos Biology. 20: e3001901. PMID 36508416 DOI: 10.1371/journal.pbio.3001901 |
0.758 |
|
| 2022 |
Gallo K, Goede A, Mura C, Abel R, Moahamed B, Preissner S, Nahles S, Heiland M, Bourne PE, Preissner R, Mallach M. A Comparative Analysis of COVID-19 Vaccines Based on over 580,000 Cases from the Vaccination Adverse Event Reporting System. Vaccines. 10. PMID 35335040 DOI: 10.3390/vaccines10030408 |
0.52 |
|
| 2022 |
Gohlke BO, Zincke F, Eckert A, Kobelt D, Preissner S, Liebeskind JM, Gunkel N, Putzker K, Lewis J, Preissner S, Kortüm B, Walther W, Mura C, Bourne PE, Stein U, et al. Real-world evidence for preventive effects of statins on cancer incidence: A trans-Atlantic analysis. Clinical and Translational Medicine. 12: e726. PMID 35184411 DOI: 10.1002/ctm2.726 |
0.525 |
|
| 2021 |
Cai T, Xie L, Chen M, Liu Y, He D, Zhang S, Mura C, Bourne P, Xie L. Exploration of Dark Chemical Genomics Space via Portal Learning: Applied to Targeting the Undruggable Genome and COVID-19 Anti-Infective Polypharmacology. Research Square. PMID 34873596 DOI: 10.21203/rs.3.rs-1109318/v1 |
0.598 |
|
| 2021 |
Mura C, Preissner S, Preissner R, Bourne PE. A Birds-Eye (Re)View of Acid-Suppression Drugs, COVID-19, and the Highly Variable Literature. Frontiers in Pharmacology. 12: 700703. PMID 34456726 DOI: 10.3389/fphar.2021.700703 |
0.554 |
|
| 2021 |
Mura C, Preissner S, Nahles S, Heiland M, Bourne PE, Preissner R. Real-world evidence for improved outcomes with histamine antagonists and aspirin in 22,560 COVID-19 patients. Signal Transduction and Targeted Therapy. 6: 267. PMID 34262013 DOI: 10.1038/s41392-021-00689-y |
0.522 |
|
| 2021 |
Donlan AN, Sutherland TE, Marie C, Preissner S, Bradley BT, Carpenter RM, Sturek JM, Ma JZ, Moreau GB, Donowitz JR, Buck GA, Serrano MG, Burgess SL, Abhyankar MM, Mura C, et al. IL-13 is a driver of COVID-19 severity. Jci Insight. PMID 34185704 DOI: 10.1172/jci.insight.150107 |
0.53 |
|
| 2021 |
Donlan AN, Sutherland TE, Marie C, Preissner S, Bradley BT, Carpenter RM, Sturek JM, Ma JZ, Moreau GB, Donowitz JR, Buck GA, Serrano MG, Burgess SL, Abhyankar MM, Mura C, et al. IL-13 is a driver of COVID-19 severity. Medrxiv : the Preprint Server For Health Sciences. PMID 33688686 DOI: 10.1101/2020.06.18.20134353 |
0.533 |
|
| 2020 |
Abel R, Paredes Ramos M, Chen Q, Pérez-Sánchez H, Coluzzi F, Rocco M, Marchetti P, Mura C, Simmaco M, Bourne PE, Preissner R, Banerjee P. Computational Prediction of Potential Inhibitors of the Main Protease of SARS-CoV-2. Frontiers in Chemistry. 8: 590263. PMID 33425850 DOI: 10.3389/fchem.2020.590263 |
0.569 |
|
| 2020 |
Seeland U, Coluzzi F, Simmaco M, Mura C, Bourne PE, Heiland M, Preissner R, Preissner S. Evidence for treatment with estradiol for women with SARS-CoV-2 infection. Bmc Medicine. 18: 369. PMID 33234138 DOI: 10.1186/s12916-020-01851-z |
0.529 |
|
| 2020 |
Mura C, Chalupa M, Newbury AM, Chalupa J, Bourne PE. Ten simple rules for starting research in your late teens. Plos Computational Biology. 16: e1008403. PMID 33211694 DOI: 10.1371/journal.pcbi.1008403 |
0.536 |
|
| 2019 |
Mura C, Veretnik S, Bourne PE. The Urfold: Structural Similarity Just above the Superfold Level? Protein Science : a Publication of the Protein Society. PMID 31599042 DOI: 10.1002/Pro.3742 |
0.654 |
|
| 2019 |
Fletcher AC, Mura C. Ten quick tips for using a Raspberry Pi. Plos Computational Biology. 15: e1006959. PMID 31048834 DOI: 10.1371/Journal.Pcbi.1006959 |
0.307 |
|
| 2018 |
Youkharibache P, Veretnik S, Li Q, Stanek KA, Mura C, Bourne PE. The Small β-Barrel Domain: A Survey-Based Structural Analysis. Structure (London, England : 1993). PMID 30393050 DOI: 10.1016/J.Str.2018.09.012 |
0.796 |
|
| 2018 |
Mura C, Draizen EJ, Bourne PE. Structural biology meets data science: does anything change? Current Opinion in Structural Biology. 52: 95-102. PMID 30267935 DOI: 10.1016/J.Sbi.2018.09.003 |
0.759 |
|
| 2018 |
Stanek KA, Mura C. Producing Hfq/Sm Proteins and sRNAs for Structural and Biophysical Studies of Ribonucleoprotein Assembly. Methods in Molecular Biology (Clifton, N.J.). 1737: 273-299. PMID 29484599 DOI: 10.1007/978-1-4939-7634-8_16 |
0.81 |
|
| 2017 |
Stanek KA, Patterson-West J, Randolph PS, Mura C. Crystal structure and RNA-binding properties of an Hfq homolog from the deep-branching Aquificae: conservation of the lateral RNA-binding mode. Acta Crystallographica. Section D, Structural Biology. 73: 294-315. PMID 28375142 DOI: 10.1107/S2059798317000031 |
0.734 |
|
| 2017 |
McAnany CE, Ekmekci B, Randolph P, Mura C. A Simulation Based Analysis of the Oligomeric Plasticity of Sm Protein Assemblies Biophysical Journal. 112: 47a. DOI: 10.1016/J.Bpj.2016.11.294 |
0.783 |
|
| 2016 |
Tang JD, McAnany CE, Mura C, Lampe KJ. Toward a Designable Extracellular Matrix: Molecular Dynamics Simulations of an Engineered Laminin-mimetic, Elastin-like Fusion Protein. Biomacromolecules. PMID 27627061 DOI: 10.1021/Acs.Biomac.6B00951 |
0.784 |
|
| 2016 |
Ekmekci B, McAnany CE, Mura C. An Introduction to Programming for Bioscientists: A Python-Based Primer. Plos Computational Biology. 12: e1004867. PMID 27271528 DOI: 10.1371/Journal.Pcbi.1004867 |
0.764 |
|
| 2016 |
McAnany CE, Mura C. Claws, Disorder, and Conformational Dynamics of the C-terminal Region of Human Desmoplakin. The Journal of Physical Chemistry. B. PMID 27188911 DOI: 10.1016/J.Bpj.2014.11.2134 |
0.773 |
|
| 2015 |
Gray C, Price CW, Lee CT, Dewald AH, Cline MA, McAnany CE, Columbus L, Mura C. Known structure, unknown function: An inquiry-based undergraduate biochemistry laboratory course. Biochemistry and Molecular Biology Education : a Bimonthly Publication of the International Union of Biochemistry and Molecular Biology. PMID 26148241 DOI: 10.1002/Bmb.20873 |
0.727 |
|
| 2014 |
Panecka J, Mura C, Trylska J. Interplay of the bacterial ribosomal A-site, S12 protein mutations and paromomycin binding: a molecular dynamics study. Plos One. 9: e111811. PMID 25379961 DOI: 10.1371/Journal.Pone.0111811 |
0.335 |
|
| 2014 |
Mura C, McAnany CE. An introduction to biomolecular simulations and docking Molecular Simulation. 40: 732-764. DOI: 10.1080/08927022.2014.935372 |
0.768 |
|
| 2014 |
Mura C. Structural and Biochemical Studies of the RNA-Associated Sm Protein Superfamily Biophysical Journal. 106: 495a. DOI: 10.1016/J.Bpj.2013.11.2770 |
0.495 |
|
| 2014 |
McAnany CE, Mura C, Ekmekci B. Towards the Dynamical Origin of the Oligomeric Plasticity of RNA-Associated Sm Assemblies Biophysical Journal. 106: 463a-464a. DOI: 10.1016/J.Bpj.2013.11.2626 |
0.812 |
|
| 2014 |
Uyar A, Pande V, Mura C, McCammon JA, Doruker P, Nilsson L. Assessing Dynamic Features of NF-κB via Molecular Dynamics Simulations and Elastic Network Model Biophysical Journal. 106: 252a. DOI: 10.1016/J.Bpj.2013.11.1482 |
0.546 |
|
| 2014 |
Randolph PS, Jain K, Mura C. Structural and Functional Studies of a Novel RNA-Binding Sm-Like Archaeal Protein Biophysical Journal. 106: 226a. DOI: 10.1016/J.Bpj.2013.11.1323 |
0.81 |
|
| 2013 |
Mura C, Randolph PS, Patterson J, Cozen AE. Archaeal and eukaryotic homologs of Hfq: A structural and evolutionary perspective on Sm function. Rna Biology. 10: 636-51. PMID 23579284 DOI: 10.4161/Rna.24538 |
0.811 |
|
| 2013 |
Patterson J, Mura C. Rapid colorimetric assays to qualitatively distinguish RNA and DNA in biomolecular samples. Journal of Visualized Experiments : Jove. e50225. PMID 23407542 DOI: 10.3791/50225 |
0.395 |
|
| 2011 |
Cie?lik M, Derewenda ZS, Mura C. Abstractions, algorithms and data structures for structural bioinformatics in PyCogent. Journal of Applied Crystallography. 44: 424-428. PMID 22479120 DOI: 10.1107/S0021889811004481 |
0.361 |
|
| 2011 |
Cie?lik M, Mura C. A lightweight, flow-based toolkit for parallel and distributed bioinformatics pipelines. Bmc Bioinformatics. 12: 61. PMID 21352538 DOI: 10.1186/1471-2105-12-61 |
0.304 |
|
| 2011 |
Panecka J, Mura C, Trylska J. Molecular dynamics of potential rRNA binders: single-stranded nucleic acids and some analogues. The Journal of Physical Chemistry. B. 115: 532-46. PMID 21192664 DOI: 10.1021/Jp106404U |
0.413 |
|
| 2010 |
Mura C, McCrimmon CM, Vertrees J, Sawaya MR. An introduction to biomolecular graphics. Plos Computational Biology. 6. PMID 20865174 DOI: 10.1371/Journal.Pcbi.1000918 |
0.55 |
|
| 2009 |
Yawn B, Zhang L, Mura C, Sukhodolets MV. RapA, the SWI/SNF subunit of Escherichia coli RNA polymerase, promotes the release of nascent RNA from transcription complexes. Biochemistry. 48: 7794-806. PMID 19580329 DOI: 10.1021/Bi9004123 |
0.395 |
|
| 2008 |
Mura C, McCammon JA. Molecular dynamics of a kappaB DNA element: base flipping via cross-strand intercalative stacking in a microsecond-scale simulation. Nucleic Acids Research. 36: 4941-55. PMID 18653524 DOI: 10.1093/Nar/Gkn473 |
0.568 |
|
| 2007 |
Arluison V, Mutyam SK, Mura C, Marco S, Sukhodolets MV. Sm-like protein Hfq: location of the ATP-binding site and the effect of ATP on Hfq-- RNA complexes. Protein Science : a Publication of the Protein Society. 16: 1830-41. PMID 17660259 DOI: 10.1110/Ps.072883707 |
0.425 |
|
| 2006 |
Arluison V, Mura C, Guzmán MR, Liquier J, Pellegrini O, Gingery M, Régnier P, Marco S. Three-dimensional structures of fibrillar Sm proteins: Hfq and other Sm-like proteins. Journal of Molecular Biology. 356: 86-96. PMID 16337963 DOI: 10.1016/J.Jmb.2005.11.010 |
0.473 |
|
| 2003 |
Mura C, Phillips M, Kozhukhovsky A, Eisenberg D. Structure and assembly of an augmented Sm-like archaeal protein 14-mer. Proceedings of the National Academy of Sciences of the United States of America. 100: 4539-44. PMID 12668760 DOI: 10.1073/Pnas.0538042100 |
0.568 |
|
| 2003 |
Mura C, Kozhukhovsky A, Gingery M, Phillips M, Eisenberg D. The oligomerization and ligand-binding properties of Sm-like archaeal proteins (SmAPs). Protein Science : a Publication of the Protein Society. 12: 832-47. PMID 12649441 DOI: 10.1110/Ps.0224703 |
0.561 |
|
| 2003 |
Mura C, Katz JE, Clarke SG, Eisenberg D. Structure and function of an archaeal homolog of survival protein E (SurEalpha): an acid phosphatase with purine nucleotide specificity. Journal of Molecular Biology. 326: 1559-75. PMID 12595266 DOI: 10.1016/S0022-2836(03)00056-1 |
0.51 |
|
| 2003 |
Mura C, Katz JE, Clarke SG, Eisenberg D. Erratum to “Structure and Function of an Archaeal Homolog of Survival Protein E (SurEα): An Acid Phosphatase with Purine Nucleotide Specificity” Journal of Molecular Biology. 328: 517. DOI: 10.1016/S0022-2836(03)00343-7 |
0.447 |
|
| 2002 |
Wang S, Mura C, Sawaya MR, Cascio D, Eisenberg D. Structure of a Nudix protein from Pyrobaculum aerophilum reveals a dimer with two intersubunit beta-sheets. Acta Crystallographica. Section D, Biological Crystallography. 58: 571-8. PMID 11914479 DOI: 10.1107/S0907444902001191 |
0.702 |
|
| 2001 |
Mura C, Cascio D, Sawaya MR, Eisenberg DS. The crystal structure of a heptameric archaeal Sm protein: Implications for the eukaryotic snRNP core. Proceedings of the National Academy of Sciences of the United States of America. 98: 5532-7. PMID 11331747 DOI: 10.1073/Pnas.091102298 |
0.762 |
|
| 1998 |
Presnell SR, Patil GS, Mura C, Jude KM, Conley JM, Bertrand JA, Kam CM, Powers JC, Williams LD. Oxyanion-mediated inhibition of serine proteases. Biochemistry. 37: 17068-81. PMID 9836602 DOI: 10.1021/Bi981636U |
0.531 |
|
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