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Arvis Sulovari - Publications

Affiliations: 
University of Vermont, Burlington, VT, United States 
Area:
genomics, statistical genetics, bioinformatics, population genetics, machine learning
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27/32 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Plender EG, Prodanov T, Hsieh P, Nizamis E, Harvey WT, Sulovari A, Munson KM, Kaufman EJ, O'Neal WK, Valdmanis PN, Marschall T, Bloom JD, Eichler EE. Structural and genetic diversity in the secreted mucins, and . Biorxiv : the Preprint Server For Biology. PMID 38562829 DOI: 10.1101/2024.03.18.585560  0.306
2023 Chaisson MJP, Sulovari A, Valdmanis PN, Miller DE, Eichler EE. Advances in the discovery and analyses of human tandem repeats. Emerging Topics in Life Sciences. PMID 37905568 DOI: 10.1042/ETLS20230074  0.339
2022 Vollger MR, Guitart X, Dishuck PC, Mercuri L, Harvey WT, Gershman A, Diekhans M, Sulovari A, Munson KM, Lewis AP, Hoekzema K, Porubsky D, Li R, Nurk S, Koren S, et al. Segmental duplications and their variation in a complete human genome. Science (New York, N.Y.). 376: eabj6965. PMID 35357917 DOI: 10.1126/science.abj6965  0.412
2022 Noyes MD, Harvey WT, Porubsky D, Sulovari A, Li R, Rose NR, Audano PA, Munson KM, Lewis AP, Hoekzema K, Mantere T, Graves-Lindsay TA, Sanders AD, Goodwin S, Kramer M, et al. Familial long-read sequencing increases yield of de novo mutations. American Journal of Human Genetics. PMID 35290762 DOI: 10.1016/j.ajhg.2022.02.014  0.341
2021 Mouakkad-Montoya L, Murata MM, Sulovari A, Suzuki R, Osia B, Malkova A, Katsumata M, Giuliano AE, Eichler EE, Tanaka H. Quantitative assessment reveals the dominance of duplicated sequences in germline-derived extrachromosomal circular DNA. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34789574 DOI: 10.1073/pnas.2102842118  0.329
2021 Wilfert AB, Turner TN, Murali SC, Hsieh P, Sulovari A, Wang T, Coe BP, Guo H, Hoekzema K, Bakken TE, Winterkorn LH, Evani US, Byrska-Bishop M, Earl RK, Bernier RA, et al. Recent ultra-rare inherited variants implicate new autism candidate risk genes. Nature Genetics. PMID 34312540 DOI: 10.1038/s41588-021-00899-8  0.322
2021 Course MM, Sulovari A, Gudsnuk K, Eichler EE, Valdmanis PN. Characterizing nucleotide variation and expansion dynamics in human-specific variable number tandem repeats. Genome Research. PMID 34244228 DOI: 10.1101/gr.275560.121  0.41
2021 Mao Y, Catacchio CR, Hillier LW, Porubsky D, Li R, Sulovari A, Fernandes JD, Montinaro F, Gordon DS, Storer JM, Haukness M, Fiddes IT, Murali SC, Dishuck PC, Hsieh P, et al. A high-quality bonobo genome refines the analysis of hominid evolution. Nature. PMID 33953399 DOI: 10.1038/s41586-021-03519-x  0.393
2021 Ebert P, Audano PA, Zhu Q, Rodriguez-Martin B, Porubsky D, Bonder MJ, Sulovari A, Ebler J, Zhou W, Serra Mari R, Yilmaz F, Zhao X, Hsieh P, Lee J, Kumar S, et al. Haplotype-resolved diverse human genomes and integrated analysis of structural variation. Science (New York, N.Y.). PMID 33632895 DOI: 10.1126/science.abf7117  0.41
2021 Mathkar PP, Chen X, Sulovari A, Li D. Characterization of Hepatitis B Virus Integrations Identified in Hepatocellular Carcinoma Genomes. Viruses. 13. PMID 33557409 DOI: 10.3390/v13020245  0.308
2020 Porubsky D, Ebert P, Audano PA, Vollger MR, Harvey WT, Marijon P, Ebler J, Munson KM, Sorensen M, Sulovari A, Haukness M, Ghareghani M, Lansdorp PM, Paten B, et al. Fully phased human genome assembly without parental data using single-cell strand sequencing and long reads. Nature Biotechnology. PMID 33288906 DOI: 10.1038/s41587-020-0719-5  0.308
2020 Maggiolini FAM, Sanders AD, Shew CJ, Sulovari A, Mao Y, Puig M, Catacchio CR, Dellino M, Palmisano D, Mercuri L, Bitonto M, Porubský D, Cáceres M, Eichler EE, Ventura M, et al. Single-cell strand sequencing of a macaque genome reveals multiple nested inversions and breakpoint reuse during primate evolution. Genome Research. PMID 33093070 DOI: 10.1101/gr.265322.120  0.412
2020 Cantsilieris S, Sunkin SM, Johnson ME, Anaclerio F, Huddleston J, Baker C, Dougherty ML, Underwood JG, Sulovari A, Hsieh P, Mao Y, Catacchio CR, Malig M, Welch AE, Sorensen M, et al. An evolutionary driver of interspersed segmental duplications in primates. Genome Biology. 21: 202. PMID 32778141 DOI: 10.1186/S13059-020-02074-4  0.356
2020 Course MM, Gudsnuk K, Smukowski SN, Winston K, Desai N, Ross JP, Sulovari A, Bourassa CV, Spiegelman D, Couthouis J, Yu CE, Tsuang DW, Jayadev S, Kay MA, Gitler AD, et al. Evolution of a Human-Specific Tandem Repeat Associated with ALS. American Journal of Human Genetics. PMID 32750315 DOI: 10.1016/J.Ajhg.2020.07.004  0.428
2020 Porubsky D, Sanders AD, Höps W, Hsieh P, Sulovari A, Li R, Mercuri L, Sorensen M, Murali SC, Gordon D, Cantsilieris S, Pollen AA, Ventura M, Antonacci F, Marschall T, et al. Recurrent inversion toggling and great ape genome evolution. Nature Genetics. PMID 32541924 DOI: 10.1038/S41588-020-0646-X  0.43
2019 Vollger MR, Logsdon GA, Audano PA, Sulovari A, Porubsky D, Peluso P, Wenger AM, Concepcion GT, Kronenberg ZN, Munson KM, Baker C, Sanders AD, Spierings DCJ, Lansdorp PM, Surti U, et al. Improved assembly and variant detection of a haploid human genome using single-molecule, high-fidelity long reads. Annals of Human Genetics. PMID 31711268 DOI: 10.1111/Ahg.12364  0.413
2019 Sulovari A, Li R, Audano PA, Porubsky D, Vollger MR, Logsdon GA, Warren WC, Pollen AA, Chaisson MJP, Eichler EE. Human-specific tandem repeat expansion and differential gene expression during primate evolution. Proceedings of the National Academy of Sciences of the United States of America. PMID 31659027 DOI: 10.1073/Pnas.1912175116  0.485
2019 Chen X, Kost J, Sulovari A, Wong N, Liang W, Cao J, Li D. A virome-wide clonal integration analysis platform for discovering cancer viral etiology. Genome Research. PMID 30872350 DOI: 10.1101/Gr.242529.118  0.329
2019 Sulovari A, Li D. VIpower: A simulation-based tool for estimating power of viral integration detection via next-generation sequencing. Genomics. PMID 30710609 DOI: 10.1016/J.Ygeno.2019.01.015  0.363
2019 Audano PA, Sulovari A, Graves-Lindsay TA, Cantsilieris S, Sorensen M, Welch AE, Dougherty ML, Nelson BJ, Shah A, Dutcher SK, Warren WC, Magrini V, McGrath SD, Li YI, Wilson RK, et al. Characterizing the Major Structural Variant Alleles of the Human Genome. Cell. PMID 30661756 DOI: 10.1016/J.Cell.2018.12.019  0.473
2019 Coe BP, Stessman HAF, Sulovari A, Geisheker MR, Bakken TE, Lake AM, Dougherty JD, Lein ES, Hormozdiari F, Bernier RA, Eichler EE. Neurodevelopmental disease genes implicated by de novo mutation and copy number variation morbidity. Nature Genetics. 51: 106-116. PMID 30559488 DOI: 10.1038/S41588-018-0288-4  0.361
2017 Wilfert AB, Sulovari A, Turner TN, Coe BP, Eichler EE. Recurrent de novo mutations in neurodevelopmental disorders: properties and clinical implications. Genome Medicine. 9: 101. PMID 29179772 DOI: 10.1186/S13073-017-0498-X  0.396
2017 Sulovari A, Liu Z, Zhu Z, Li D. Genome-wide meta-analysis of copy number variations with alcohol dependence. The Pharmacogenomics Journal. PMID 28696413 DOI: 10.1038/Tpj.2017.35  0.417
2016 Sulovari A, Chen YH, Hudziak JJ, Li D. Atlas of human diseases influenced by genetic variants with extreme allele frequency differences. Human Genetics. PMID 27699474 DOI: 10.1007/S00439-016-1734-Y  0.42
2015 Sulovari A, Kranzler HR, Farrer LA, Gelernter J, Li D. Eye color: A potential indicator of alcohol dependence risk in European Americans. American Journal of Medical Genetics. Part B, Neuropsychiatric Genetics : the Official Publication of the International Society of Psychiatric Genetics. 168: 347-53. PMID 25921801 DOI: 10.1002/Ajmg.B.32316  0.322
2014 Sulovari A, Li D. GACT: a Genome build and Allele definition Conversion Tool for SNP imputation and meta-analysis in genetic association studies. Bmc Genomics. 15: 610. PMID 25038819 DOI: 10.1186/1471-2164-15-610  0.418
2014 Li D, Sulovari A, Cheng C, Zhao H, Kranzler HR, Gelernter J. Association of gamma-aminobutyric acid A receptor α2 gene (GABRA2) with alcohol use disorder. Neuropsychopharmacology : Official Publication of the American College of Neuropsychopharmacology. 39: 907-18. PMID 24136292 DOI: 10.1038/Npp.2013.291  0.347
Low-probability matches (unlikely to be authored by this person)
2021 Miller DE, Sulovari A, Wang T, Loucks H, Hoekzema K, Munson KM, Lewis AP, Fuerte EPA, Paschal CR, Walsh T, Thies J, Bennett JT, Glass I, Dipple KM, Patterson K, et al. Targeted long-read sequencing identifies missing disease-causing variation. American Journal of Human Genetics. PMID 34216551 DOI: 10.1016/j.ajhg.2021.06.006  0.295
2020 Wang T, Hoekzema K, Vecchio D, Wu H, Sulovari A, Coe BP, Gillentine MA, Wilfert AB, Perez-Jurado LA, Kvarnung M, Sleyp Y, Earl RK, Rosenfeld JA, Geisheker MR, Han L, et al. Large-scale targeted sequencing identifies risk genes for neurodevelopmental disorders. Nature Communications. 11: 4932. PMID 33004838 DOI: 10.1038/s41467-020-18723-y  0.257
2015 Sulovari A, Kranzler HR, Farrer LA, Gelernter J, Li D. Further analyses support the association between light eye color and alcohol dependence. American Journal of Medical Genetics. Part B, Neuropsychiatric Genetics : the Official Publication of the International Society of Psychiatric Genetics. 168: 757-60. PMID 26290254 DOI: 10.1002/Ajmg.B.32357  0.24
2017 Little AC, Sulovari A, Danyal K, Heppner DE, Seward DJ, van der Vliet A. Paradoxical roles of dual oxidases in cancer biology. Free Radical Biology & Medicine. 110: 117-132. PMID 28578013 DOI: 10.1016/J.Freeradbiomed.2017.05.024  0.234
2020 Wang T, Hoekzema K, Vecchio D, Wu H, Sulovari A, Coe BP, Gillentine MA, Wilfert AB, Perez-Jurado LA, Kvarnung M, Sleyp Y, Earl RK, Rosenfeld JA, Geisheker MR, Han L, et al. Author Correction: Large-scale targeted sequencing identifies risk genes for neurodevelopmental disorders. Nature Communications. 11: 5398. PMID 33087701 DOI: 10.1038/s41467-020-19289-5  0.189
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