| Year |
Citation |
Score |
| 2024 |
Kang M, Otani Y, Guo Y, Yan J, Goult BT, Howe AK. The focal adhesion protein talin is a mechanically gated A-kinase anchoring protein. Proceedings of the National Academy of Sciences of the United States of America. 121: e2314947121. PMID 38513099 DOI: 10.1073/pnas.2314947121 |
0.307 |
|
| 2024 |
Zhao X, Vogirala VK, Liu M, Zhou Y, Rhodes D, Sandin S, Yan J. Exploring TRF2-Dependent DNA Distortion Through Single-DNA Manipulation Studies. Communications Biology. 7: 148. PMID 38310140 DOI: 10.1038/s42003-024-05838-x |
0.327 |
|
| 2023 |
Kang M, Otani Y, Guo Y, Yan J, Goult BT, Howe AK. The focal adhesion protein talin is a mechanically-gated A-kinase anchoring protein (AKAP). Biorxiv : the Preprint Server For Biology. PMID 37645895 DOI: 10.1101/2023.08.20.554038 |
0.319 |
|
| 2023 |
Deng Y, Yan J. Force-Dependent Structural Changes of Filamin C Rod Domains Regulated by Filamin C Dimer. Journal of the American Chemical Society. PMID 37369984 DOI: 10.1021/jacs.3c02303 |
0.395 |
|
| 2023 |
Zhao X, Liu XP, Yan J. DNA-binding proteins studied by mechanical manipulation and AFM imaging of single DNA molecules. Biophysics Reports. 8: 212-224. PMID 37288005 DOI: 10.52601/bpr.2022.220015 |
0.365 |
|
| 2023 |
Liu J, Le S, Yao M, Huang W, Tio Z, Zhou Y, Yan J. Tension Gauge Tethers as Tension Threshold and Duration Sensors. Acs Sensors. PMID 36731861 DOI: 10.1021/acssensors.2c02218 |
0.709 |
|
| 2022 |
Huang W, Le S, Sun Y, Lin DJ, Yao M, Shi Y, Yan J. Mechanical Stabilization of a Bacterial Adhesion Complex. Journal of the American Chemical Society. 144: 16808-16818. PMID 36070862 DOI: 10.1021/jacs.2c03961 |
0.737 |
|
| 2022 |
Efremov AK, Yao M, Sun Y, Tee YH, Sheetz MP, Bershadsky AD, Martinac B, Yan J. Application of piconewton forces to individual filopodia reveals mechanosensory role of L-type Ca channels. Biomaterials. 284: 121477. PMID 35395455 DOI: 10.1016/j.biomaterials.2022.121477 |
0.726 |
|
| 2021 |
Wang Y, Yao M, Baker KB, Gough RE, Le S, Goult BT, Yan J. Force-Dependent Interactions between Talin and Full-Length Vinculin. Journal of the American Chemical Society. PMID 34463480 DOI: 10.1021/jacs.1c06223 |
0.76 |
|
| 2021 |
McCormack LS, Efremov AK, Yan J. Effects of size, cooperativity and competitive binding on protein positioning on DNA. Biophysical Journal. PMID 33771470 DOI: 10.1016/j.bpj.2021.03.016 |
0.326 |
|
| 2020 |
Yu M, Zhao Z, Chen Z, Le S, Yan J. Modulating mechanical stability of heterodimerization between engineered orthogonal helical domains. Nature Communications. 11: 4476. PMID 32900995 DOI: 10.1038/S41467-020-18323-W |
0.429 |
|
| 2019 |
Le S, Yu M, Yan J. Direct single-molecule quantification reveals unexpectedly high mechanical stability of vinculin-talin/α-catenin linkages. Science Advances. 5: eaav2720. PMID 31897422 DOI: 10.1126/Sciadv.Aav2720 |
0.41 |
|
| 2019 |
Strick TR, Yan J. A measure of force. Current Opinion in Chemical Biology. 53: A4-A6. PMID 31864527 DOI: 10.1016/J.Cbpa.2019.11.011 |
0.364 |
|
| 2019 |
Le S, Yu M, Bershadsky A, Yan J. Mechanical regulation of formin-dependent actin polymerization. Seminars in Cell & Developmental Biology. PMID 31813767 DOI: 10.1016/J.Semcdb.2019.11.016 |
0.374 |
|
| 2019 |
Zhao X, Guo S, Lu C, Chen J, Le S, Fu H, Yan J. Single-molecule manipulation quantification of site-specific DNA binding. Current Opinion in Chemical Biology. 53: 106-117. PMID 31677535 DOI: 10.1016/J.Cbpa.2019.08.006 |
0.444 |
|
| 2019 |
Yan J, Le S, Yu M. Phosphorylation Reduces the Mechanical Stability of α-Catenin/β-Catenin Complex. Angewandte Chemie (International Ed. in English). PMID 31625226 DOI: 10.1002/Anie.201911383 |
0.309 |
|
| 2019 |
Wang Y, Barnett S, Le S, Guo Z, Zhong X, Kanchanawong P, Yan J. Label-free single-molecule quantification of rapamycin-induced FKBP-FRB dimerization for direct control of cellular mechanotransduction. Nano Letters. PMID 31466449 DOI: 10.1021/Acs.Nanolett.9B03364 |
0.369 |
|
| 2019 |
Alieva NO, Efremov AK, Hu S, Oh D, Chen Z, Natarajan M, Ong HT, Jégou A, Romet-Lemonne G, Groves JT, Sheetz MP, Yan J, Bershadsky AD. Myosin IIA and formin dependent mechanosensitivity of filopodia adhesion. Nature Communications. 10: 3593. PMID 31399564 DOI: 10.1038/S41467-019-10964-W |
0.597 |
|
| 2019 |
Yu M, Le S, Ammon YC, Goult BT, Akhmanova A, Yan J. Force-dependent regulation of KANK1-talin complex at focal adhesions. Nano Letters. PMID 31389241 DOI: 10.1021/Acs.Nanolett.9B01732 |
0.448 |
|
| 2019 |
Pang SM, Le S, Kwiatkowski AV, Yan J. Mechanical stability of αT-catenin and its activation by force for vinculin binding. Molecular Biology of the Cell. mbcE19020102. PMID 31318313 DOI: 10.1091/Mbc.E19-02-0102 |
0.429 |
|
| 2019 |
Wang Y, Yan J, Goult BT. Force-dependent binding constants. Biochemistry. PMID 31315399 DOI: 10.1021/Acs.Biochem.9B00453 |
0.443 |
|
| 2019 |
Lu C, Le S, Chen J, Byrd AK, Rhodes D, Raney KD, Yan J. Direct quantification of the translocation activities of Saccharomyces cerevisiae Pif1 helicase. Nucleic Acids Research. PMID 31216020 DOI: 10.1093/Nar/Gkz541 |
0.47 |
|
| 2019 |
Ahmed SM, Ramani PD, Wong SQR, Zhao X, Ivanyi-Nagy R, Leong TC, Chua C, Li Z, Hentze H, Tan IB, Yan J, DasGupta R, Dröge P. The chromatin structuring protein HMGA2 influences human subtelomere stability and cancer chemosensitivity. Plos One. 14: e0215696. PMID 31067275 DOI: 10.1371/Journal.Pone.0215696 |
0.431 |
|
| 2018 |
Le S, Yu M, Hovan L, Zhao Z, Ervasti J, Yan J. Dystrophin As A Molecular Shock Absorber. Acs Nano. PMID 30457830 DOI: 10.1021/Acsnano.8B05721 |
0.41 |
|
| 2018 |
Guttula D, Yao M, Baker K, Liang Y, Goult BT, Doyle PS, Yan J. Calcium-Mediated Protein Folding and Stabilisation of Salmonella Biofilm-Associated Protein a. Journal of Molecular Biology. PMID 30452884 DOI: 10.1016/J.Jmb.2018.11.014 |
0.717 |
|
| 2018 |
Goult BT, Yan J, Schwartz MA. Talin as a mechanosensitive signaling hub. The Journal of Cell Biology. PMID 30254032 DOI: 10.1083/Jcb.201808061 |
0.362 |
|
| 2018 |
Gulvady R, Gao Y, Kenney LJ, Yan J. A single molecule analysis of H-NS uncouples DNA binding affinity from DNA specificity. Nucleic Acids Research. PMID 30239908 DOI: 10.1093/Nar/Gky826 |
0.437 |
|
| 2018 |
Guo S, Tang Q, Yao M, You H, Le S, Chen H, Yan J. Structural-elastic determination of the force-dependent transition rate of biomolecules. Chemical Science. 9: 5871-5882. PMID 30079200 DOI: 10.1039/C8Sc01319E |
0.747 |
|
| 2018 |
Chen P, Dong L, Hu M, Wang YZ, Xiao X, Zhao Z, Yan J, Wang PY, Reinberg D, Li M, Li W, Li G. Functions of FACT in Breaking the Nucleosome and Maintaining Its Integrity at the Single-Nucleosome Level. Molecular Cell. 71: 284-293.e4. PMID 30029006 DOI: 10.1016/J.Molcel.2018.06.020 |
0.342 |
|
| 2018 |
Yu M, Le S, Efremov AK, Zeng X, Bershadsky AD, Yan J. Effects of mechanical stimuli on profilin/formin-mediated actin polymerization. Nano Letters. PMID 29976069 DOI: 10.1021/Acs.Nanolett.8B02211 |
0.392 |
|
| 2018 |
Efremov AK, Yan J. Transfer-matrix calculations of the effects of tension and torque constraints on DNA-protein interactions. Nucleic Acids Research. PMID 29878241 DOI: 10.1093/Nar/Gky478 |
0.488 |
|
| 2018 |
Yamanaka Y, Winardhi RS, Yamauchi E, Nishiyama SI, Sowa Y, Yan J, Kawagishi I, Ishihama A, Yamamoto K. The dimerization site-2 of the bacterial DNA-binding protein H-NS is required for gene silencing and stiffened nucleoprotein filament formation. The Journal of Biological Chemistry. PMID 29695505 DOI: 10.1074/Jbc.Ra117.001425 |
0.407 |
|
| 2018 |
You H, Guo S, Le S, Tang Q, Yao M, Zhao X, Yan J. Two-State Folding Energy Determination Based on Transition Points in Non-Equilibrium Single-Molecule Experiments. The Journal of Physical Chemistry Letters. PMID 29385343 DOI: 10.1021/Acs.Jpclett.7B03123 |
0.761 |
|
| 2018 |
Yu M, Yuan X, Sheetz M, Bershadsky A, Yan J. MDIA1 Senses Both Force and Torque during F-actin Filament Polymerisation Biophysical Journal. 114: 144a. DOI: 10.1016/j.bpj.2017.11.808 |
0.491 |
|
| 2018 |
Zhao X, Vogirala VK, Liu M, Zhou Y, Sandin S, Yan J. Single Molecule Study of hRap1 Regulated TRF2 Binding Motifs on Telomeric dsDNA Biophysical Journal. 114. DOI: 10.1016/J.Bpj.2017.11.1407 |
0.353 |
|
| 2018 |
Yuan G, Chen W, Zhou X, Yan J, Chen H. Mechanism of Complex Force-Dependent Unfolding Dynamics of Titin Immunoglobulin Domain Revealed by Magnetic Tweezers Biophysical Journal. 114. DOI: 10.1016/J.Bpj.2017.11.1290 |
0.395 |
|
| 2017 |
Efremov AK, Winardhi RS, Yan J. Theoretical Methods for Studying DNA Structural Transitions under Applied Mechanical Constraints. Polymers. 9. PMID 30970752 DOI: 10.3390/Polym9020074 |
0.482 |
|
| 2017 |
Seddiki R, Narayana GHNS, Strale PO, Balcioglu HE, Peyret G, Yao M, Le AP, Teck LC, Yan J, Ladoux B, Mège RM. Force-dependent binding of vinculin to α-catenin regulates cell-cell contacts stability and collective cell behavior. Molecular Biology of the Cell. PMID 29282282 DOI: 10.1091/Mbc.E17-04-0231 |
0.745 |
|
| 2017 |
Le S, Hu X, Yao M, Chen H, Yu M, Xu X, Nakazawa N, Margadant FM, Sheetz MP, Yan J. Mechanotransmission and Mechanosensing of Human alpha-Actinin 1. Cell Reports. 21: 2714-2723. PMID 29212020 DOI: 10.1016/J.Celrep.2017.11.040 |
0.782 |
|
| 2017 |
Spadaro D, Le S, Laroche T, Mean I, Jond L, Yan J, Citi S. Tension-Dependent Stretching Activates ZO-1 to Control the Junctional Localization of Its Interactors. Current Biology : Cb. 27: 3783-3795.e8. PMID 29199076 DOI: 10.1016/J.Cub.2017.11.014 |
0.474 |
|
| 2017 |
Yu M, Yuan X, Lu C, Le S, Kawamura R, Efremov AK, Zhao Z, Kozlov MM, Sheetz M, Bershadsky A, Yan J. mDia1 senses both force and torque during F-actin filament polymerization. Nature Communications. 8: 1650. PMID 29162803 DOI: 10.1016/J.Bpj.2017.11.808 |
0.704 |
|
| 2017 |
Gao Y, Foo YH, Winardhi RS, Tang Q, Yan J, Kenney LJ. Charged residues in the H-NS linker drive DNA binding and gene silencing in single cells. Proceedings of the National Academy of Sciences of the United States of America. PMID 29109287 DOI: 10.1073/Pnas.1716721114 |
0.445 |
|
| 2017 |
You H, Le S, Chen H, Qin L, Yan J. Single-molecule Manipulation of G-quadruplexes by Magnetic Tweezers. Journal of Visualized Experiments : Jove. PMID 28994776 DOI: 10.3791/56328 |
0.346 |
|
| 2017 |
Chen J, Tang Q, Guo S, Lu C, Le S, Yan J. Parallel triplex structure formed between stretched single-stranded DNA and homologous duplex DNA. Nucleic Acids Research. 45: 10032-10041. PMID 28973442 DOI: 10.1093/Nar/Gkx628 |
0.473 |
|
| 2017 |
Le S, Serrano E, Kawamura R, Carrasco B, Yan J, Alonso JC. Bacillus subtilis RecA with DprA-SsbA antagonizes RecX function during natural transformation. Nucleic Acids Research. 45: 8873-8885. PMID 28911099 DOI: 10.1093/Nar/Gkx583 |
0.593 |
|
| 2017 |
Winardhi RS, Yan J. Applications of Magnetic Tweezers to Studies of NAPs. Methods in Molecular Biology (Clifton, N.J.). 1624: 173-191. PMID 28842884 DOI: 10.1007/978-1-4939-7098-8_14 |
0.453 |
|
| 2017 |
Zhao X, Peter S, Dröge P, Yan J. Oncofetal HMGA2 effectively curbs unconstrained (+) and (-) DNA supercoiling. Scientific Reports. 7: 8440. PMID 28814752 DOI: 10.1038/S41598-017-09104-5 |
0.445 |
|
| 2017 |
Zhao X, Zeng X, Lu C, Yan J. Studying the mechanical responses of proteins using magnetic tweezers. Nanotechnology. PMID 28766506 DOI: 10.1088/1361-6528/Aa837E |
0.444 |
|
| 2017 |
Yuan G, Le S, Yao M, Qian H, Zhou X, Yan J, Chen H. Elasticity of the Transition State Leading to an Unexpected Mechanical Stabilization of Titin Immunoglobulin Domains. Angewandte Chemie (International Ed. in English). PMID 28394039 DOI: 10.1002/Anie.201700411 |
0.762 |
|
| 2017 |
You H, Lattmann S, Rhodes D, Yan J. RHAU helicase stabilizes G4 in its nucleotide-free state and destabilizes G4 upon ATP hydrolysis. Nucleic Acids Research. 45: 206-214. PMID 28069994 DOI: 10.1093/Nar/Gkw881 |
0.325 |
|
| 2017 |
Yao M, Goult BT, Sheetz MP, Yan J. Talin as a Molecular Shock Absorber Biophysical Journal. 112: 267a-268a. DOI: 10.1016/J.Bpj.2016.11.1452 |
0.698 |
|
| 2017 |
Efremov AK, Zhao X, Maruyama H, Takeyasu K, Yan J. Modulation of DNA-Biding Properties of Euryarchaeal Architectural Proteins by MG2+ Ions Triggers Drastic Changes in the Global DNA Organization Biophysical Journal. 112. DOI: 10.1016/J.Bpj.2016.11.1203 |
0.458 |
|
| 2016 |
Winardhi RS, Tang Q, Chen J, Yao M, Yan J. Probing Small Molecule Binding to Unfolded Polyprotein Based on its Elasticity and Refolding. Biophysical Journal. 111: 2349-2357. PMID 27926836 DOI: 10.1016/J.Bpj.2016.10.031 |
0.736 |
|
| 2016 |
Efremov AK, Winardhi RS, Yan J. Transfer-matrix calculations of DNA polymer micromechanics under tension and torque constraints. Physical Review. E. 94: 032404. PMID 27739846 DOI: 10.1103/Physreve.94.032404 |
0.463 |
|
| 2016 |
Yan J. Mechanisms of DNA disentangling by type II topoisomerases: Comment on "Disentangling DNA molecules" by Alexander Vologodskii. Physics of Life Reviews. PMID 27666769 DOI: 10.1016/J.Plrev.2016.09.005 |
0.391 |
|
| 2016 |
Li W, Chen P, Yu J, Dong L, Liang D, Feng J, Yan J, Wang PY, Li Q, Zhang Z, Li M, Li G. FACT Remodels the Tetranucleosomal Unit of Chromatin Fibers for Gene Transcription. Molecular Cell. PMID 27666592 DOI: 10.1016/J.Molcel.2016.08.024 |
0.309 |
|
| 2016 |
Kulemzina I, Ang K, Zhao X, Teh JT, Verma V, Suranthran S, Chavda AP, Huber RG, Eisenhaber B, Eisenhaber F, Yan J, Ivanov D. A Reversible Association between Smc Coiled Coils Is Regulated by Lysine Acetylation and Is Required for Cohesin Association with the DNA. Molecular Cell. PMID 27618487 DOI: 10.1016/J.Molcel.2016.08.008 |
0.433 |
|
| 2016 |
Yao M, Goult BT, Klapholz B, Hu X, Toseland CP, Guo Y, Cong P, Sheetz MP, Yan J. The mechanical response of talin. Nature Communications. 7: 11966. PMID 27384267 DOI: 10.1038/Ncomms11966 |
0.801 |
|
| 2016 |
Yao M, Goult BT, Sheetz MP, Yan J. The Mechanical Properties of Talin Rod Domain Biophysical Journal. 110: 620a-621a. DOI: 10.1016/J.Bpj.2015.11.3329 |
0.799 |
|
| 2016 |
Yuan G, Yang Z, Qian H, Zhou X, Yan J, Chen H. Surprising Force-Dependent Unfolding of Titin Immunoglobulin Domain Revealed by Magnetic Tweezers Biophysical Journal. 110: 496. DOI: 10.1016/J.Bpj.2015.11.2656 |
0.406 |
|
| 2016 |
Wang Y, Goult BT, Yao M, Yan J. Mechano-Sensitive Interaction between Talin and Full-Length Vinculin Biophysical Journal. 110. DOI: 10.1016/J.Bpj.2015.11.187 |
0.74 |
|
| 2016 |
Yang Z, Yuan G, Zhai W, Yan J, Chen H. The kinetics of force-dependent hybridization and strand-peeling of short DNA fragments Science China Physics, Mechanics & Astronomy. 59. DOI: 10.1007/S11433-016-0112-0 |
0.491 |
|
| 2016 |
Cong P, Yan J. Recent progress on the mechanics of sharply bent DNA Science China Physics, Mechanics & Astronomy. 59. DOI: 10.1007/S11433-016-0099-0 |
0.44 |
|
| 2015 |
Dai L, Renner CB, Yan J, Doyle PS. Coil-globule transition of a single semiflexible chain in slitlike confinement. Scientific Reports. 5: 18438. PMID 26679086 DOI: 10.1038/Srep18438 |
0.301 |
|
| 2015 |
Lee SY, Lim CJ, Dröge P, Yan J. Regulation of Bacterial DNA Packaging in Early Stationary Phase by Competitive DNA Binding of Dps and IHF. Scientific Reports. 5: 18146. PMID 26657062 DOI: 10.1038/Srep18146 |
0.441 |
|
| 2015 |
Cong P, Dai L, Chen H, van der Maarel JR, Doyle PS, Yan J. Revisiting the Anomalous Bending Elasticity of Sharply Bent DNA. Biophysical Journal. 109: 2338-2351. PMID 26636945 DOI: 10.1016/J.Bpj.2015.10.016 |
0.44 |
|
| 2015 |
Winardhi RS, Yan J, Kenney LJ. H-NS Regulates Gene Expression and Compacts the Nucleoid: Insights from Single-Molecule Experiments. Biophysical Journal. 109: 1321-9. PMID 26445432 DOI: 10.1016/J.Bpj.2015.08.016 |
0.421 |
|
| 2015 |
Li W, Wong WJ, Lim CJ, Ju HP, Li M, Yan J, Wang PY. Complex kinetics of DNA condensation revealed through DNA twist tracing. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 92: 022707. PMID 26382432 DOI: 10.1103/Physreve.92.022707 |
0.434 |
|
| 2015 |
Le S, Liu R, Lim CT, Yan J. Uncovering mechanosensing mechanisms at the single protein level using magnetic tweezers. Methods (San Diego, Calif.). PMID 26318089 DOI: 10.1016/J.Ymeth.2015.08.020 |
0.356 |
|
| 2015 |
Yan J, Yao M, Goult BT, Sheetz MP. Talin Dependent Mechanosensitivity of Cell Focal Adhesions. Cellular and Molecular Bioengineering. 8: 151-159. PMID 26097520 DOI: 10.1007/S12195-014-0364-5 |
0.782 |
|
| 2015 |
Le S, Yao M, Chen J, Efremov AK, Azimi S, Yan J. Disturbance-free rapid solution exchange for magnetic tweezers single-molecule studies. Nucleic Acids Research. PMID 26007651 DOI: 10.1093/Nar/Gkv554 |
0.765 |
|
| 2015 |
Ladoux B, Nelson WJ, Yan J, Mège RM. The mechanotransduction machinery at work at adherens junctions. Integrative Biology : Quantitative Biosciences From Nano to Macro. 7: 1109-19. PMID 25968913 DOI: 10.1039/C5Ib00070J |
0.388 |
|
| 2015 |
Efremov AK, Qu Y, Maruyama H, Lim CJ, Takeyasu K, Yan J. Transcriptional Repressor TrmBL2 from Thermococcus kodakarensis Forms Filamentous Nucleoprotein Structures and Competes with Histones for DNA Binding in a Salt- and DNA Supercoiling-dependent Manner. The Journal of Biological Chemistry. 290: 15770-84. PMID 25931116 DOI: 10.1074/Jbc.M114.626705 |
0.458 |
|
| 2015 |
Yao M, Chen H, Yan J. Thermodynamics of force-dependent folding and unfolding of small protein and nucleic acid structures. Integrative Biology : Quantitative Biosciences From Nano to Macro. PMID 25799983 DOI: 10.1039/C5Ib00038F |
0.746 |
|
| 2015 |
Chen J, Le S, Basu A, Chazin WJ, Yan J. Mechanochemical regulations of RPA's binding to ssDNA. Scientific Reports. 5: 9296. PMID 25787788 DOI: 10.1038/Srep09296 |
0.53 |
|
| 2015 |
Yao M, Qiu W, Liu R, Efremov AK, Cong P, Seddiki R, Payre M, Lim CT, Ladoux B, Mège RM, Yan J. Corrigendum: Force-dependent conformational switch of α-catenin controls vinculin binding. Nature Communications. 6: 6568. PMID 25735633 DOI: 10.1038/Ncomms7568 |
0.713 |
|
| 2015 |
Chen H, Yuan G, Winardhi RS, Yao M, Popa I, Fernandez JM, Yan J. Dynamics of equilibrium folding and unfolding transitions of titin immunoglobulin domain under constant forces. Journal of the American Chemical Society. 137: 3540-6. PMID 25726700 DOI: 10.1021/Ja5119368 |
0.771 |
|
| 2015 |
You H, Wu J, Shao F, Yan J. Stability and kinetics of c-MYC promoter G-quadruplexes studied by single-molecule manipulation. Journal of the American Chemical Society. 137: 2424-7. PMID 25654467 DOI: 10.1021/Ja511680U |
0.352 |
|
| 2015 |
Yao M, Lim CT, Ladoux B, Mege R, Yan J. Mechanical Activation of α-Catenin and Vinculin Biophysical Journal. 108: 179a. DOI: 10.1016/J.Bpj.2014.11.991 |
0.749 |
|
| 2015 |
Efremov AK, Qu Y, Maruyama H, Lim CJ, Takeyasu K, Yan J. TrmBL2 Protein from Thermococcus Kodakarensis Competes with Histones for DNA Binding and Forms Filamentous Nucleoprotein Complexes that Affect DNA Structural State Biophysical Journal. 108. DOI: 10.1016/J.Bpj.2014.11.434 |
0.466 |
|
| 2015 |
Zhao X, Dröge P, Yan J. Effects of DNA Structural and Topological Constraints on HMGA2 Binding Biophysical Journal. 108. DOI: 10.1016/J.Bpj.2014.11.402 |
0.456 |
|
| 2015 |
Chen J, Le S, Chazin WJ, Yan J. Single Molecule Studies of RPA's Sequential Binding to ssDNA Reveals a Highly Stiff and Stable State Induced by the Binding of Zinc Biophysical Journal. 108. DOI: 10.1016/J.Bpj.2014.11.398 |
0.452 |
|
| 2015 |
Chen H, Yuan G, Yan J. Folding and Unfolding Dynamics of Titin Immunoglobulin Domain Under Constant Forces Biophysical Journal. 108. DOI: 10.1016/J.Bpj.2014.11.2856 |
0.46 |
|
| 2015 |
Popa I, Rivas-Pardo JA, Eckels EC, Valle-Orero J, Kahn TB, Berkovich R, Stirnemann G, Chen H, Fernandez VI, Berne BJ, Yan J, Fernandez JM. Revisiting the Free Energy of Modular Proteins under Force Biophysical Journal. 108: 355a. DOI: 10.1016/J.Bpj.2014.11.1944 |
0.422 |
|
| 2015 |
Hwee Foo Y, Winardhi RS, Yan J, Kenney L. Investigation of the EnvZ/OmpR Bacterial Signaling System using Single Particle Tracking and Single Molecule Force Spectroscopy Biophysical Journal. 108: 5a. DOI: 10.1016/J.Bpj.2014.11.043 |
0.436 |
|
| 2014 |
Winardhi RS, Castang S, Dove SL, Yan J. Single-molecule study on histone-like nucleoid-structuring protein (H-NS) paralogue in Pseudomonas aeruginosa: MvaU bears DNA organization mode similarities to MvaT. Plos One. 9: e112246. PMID 25372370 DOI: 10.1371/Journal.Pone.0112246 |
0.435 |
|
| 2014 |
Kundukad B, Yan J, Doyle PS. Effect of YOYO-1 on the mechanical properties of DNA. Soft Matter. 10: 9721-8. PMID 25366273 DOI: 10.1039/C4Sm02025A |
0.436 |
|
| 2014 |
Zhang X, Qu Y, Chen H, Rouzina I, Zhang S, Doyle PS, Yan J. Interconversion between three overstretched DNA structures. Journal of the American Chemical Society. 136: 16073-80. PMID 25337990 DOI: 10.1021/Ja5090805 |
0.455 |
|
| 2014 |
Le S, Chen H, Zhang X, Chen J, Patil KN, Muniyappa K, Yan J. Mechanical force antagonizes the inhibitory effects of RecX on RecA filament formation in Mycobacterium tuberculosis. Nucleic Acids Research. 42: 11992-9. PMID 25294832 DOI: 10.1093/Nar/Gku899 |
0.497 |
|
| 2014 |
Yao M, Qiu W, Liu R, Efremov AK, Cong P, Seddiki R, Payre M, Lim CT, Ladoux B, Mège RM, Yan J. Force-dependent conformational switch of α-catenin controls vinculin binding. Nature Communications. 5: 4525. PMID 25077739 DOI: 10.1038/Ncomms5525 |
0.769 |
|
| 2014 |
You H, Zeng X, Xu Y, Lim CJ, Efremov AK, Phan AT, Yan J. Dynamics and stability of polymorphic human telomeric G-quadruplex under tension. Nucleic Acids Research. 42: 8789-95. PMID 25013179 DOI: 10.1093/Nar/Gku581 |
0.353 |
|
| 2014 |
Lim CJ, Kenney LJ, Yan J. Single-molecule studies on the mechanical interplay between DNA supercoiling and H-NS DNA architectural properties. Nucleic Acids Research. 42: 8369-78. PMID 24990375 DOI: 10.1093/Nar/Gku566 |
0.427 |
|
| 2014 |
Yao M, Goult BT, Chen H, Cong P, Sheetz MP, Yan J. Mechanical activation of vinculin binding to talin locks talin in an unfolded conformation. Scientific Reports. 4: 4610. PMID 24714394 DOI: 10.1038/Srep04610 |
0.775 |
|
| 2014 |
Winardhi RS, Gulvady R, Mellies JL, Yan J. Locus of enterocyte effacement-encoded regulator (Ler) of pathogenic Escherichia coli competes off histone-like nucleoid-structuring protein (H-NS) through noncooperative DNA binding. The Journal of Biological Chemistry. 289: 13739-50. PMID 24668810 DOI: 10.1074/Jbc.M113.545954 |
0.437 |
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| 2014 |
Xu Y, Chen H, Qu Y, Efremov AK, Li M, Ouyang Z, Liu D, Yan J. Mechano-chemical selections of two competitive unfolding pathways of a single DNA i-motif Chinese Physics B. 23: 068702. DOI: 10.1088/1674-1056/23/6/068702 |
0.452 |
|
| 2014 |
Zhang X, Yan J. Thermodynamics and Kinetics of Three Distinct Overstretched DNA Structures Produced by Large Tension Biophysical Journal. 106. DOI: 10.1016/J.Bpj.2013.11.1639 |
0.446 |
|
| 2013 |
Le S, Chen H, Cong P, Lin J, Dröge P, Yan J. Mechanosensing of DNA bending in a single specific protein-DNA complex. Scientific Reports. 3: 3508. PMID 24336435 DOI: 10.1038/Srep03508 |
0.507 |
|
| 2013 |
Fu H, Le S, Muniyappa K, Yan J. Dynamics and Regulation of RecA Polymerization and De-Polymerization on Double-Stranded DNA. Plos One. 8: e66712. PMID 23825559 DOI: 10.1371/Journal.Pone.0066712 |
0.478 |
|
| 2013 |
Qu Y, Lim CJ, Whang YR, Liu J, Yan J. Mechanism of DNA organization by Mycobacterium tuberculosis protein Lsr2. Nucleic Acids Research. 41: 5263-5272. PMID 23580555 DOI: 10.1093/Nar/Gkt249 |
0.433 |
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| 2013 |
Chen H, Chandrasekar S, Sheetz MP, Stossel TP, Nakamura F, Yan J. Mechanical perturbation of filamin A immunoglobulin repeats 20-21 reveals potential non-equilibrium mechanochemical partner binding function. Scientific Reports. 3: 1642. PMID 23571456 DOI: 10.1038/Srep01642 |
0.65 |
|
| 2013 |
Zhang X, Chen H, Le S, Rouzina I, Doyle PS, Yan J. Revealing the competition between peeled ssDNA, melting bubbles, and S-DNA during DNA overstretching by single-molecule calorimetry. Proceedings of the National Academy of Sciences of the United States of America. 110: 3865-70. PMID 23431154 DOI: 10.1073/Pnas.1213740110 |
0.438 |
|
| 2013 |
Fu H, Le S, Chen H, Muniyappa K, Yan J. Force and ATP hydrolysis dependent regulation of RecA nucleoprotein filament by single-stranded DNA binding protein. Nucleic Acids Research. 41: 924-32. PMID 23221642 DOI: 10.1093/Nar/Gks1162 |
0.53 |
|
| 2013 |
Lim CJ, Lee SY, Teramoto J, Ishihama A, Yan J. The nucleoid-associated protein Dan organizes chromosomal DNA through rigid nucleoprotein filament formation in E. coli during anoxia. Nucleic Acids Research. 41: 746-53. PMID 23180762 DOI: 10.1093/Nar/Gks1126 |
0.46 |
|
| 2013 |
Chen H, Chandrasekar S, Wang Y, Nakamura F, Yan J. Probing the Interaction between the Auto-Inhibitory Filamin a Immunoglobulin Repeats Pair 20 and 21 under Tension Biophysical Journal. 104. DOI: 10.1016/J.Bpj.2012.11.797 |
0.426 |
|
| 2013 |
Fu H, Le S, Chen H, Muniyappa K, Yan J. Formation and Stability of E. Coli RecA Nucleoprotein Filament Regulated by Single-Stranded DNA Binding Protein Biophysical Journal. 104. DOI: 10.1016/J.Bpj.2012.11.463 |
0.495 |
|
| 2013 |
Zhang X, Le S, Chen H, Doyle P, Yan J. Sequence Dependence of the “B-to-S” DNA Overstretching Transition Biophysical Journal. 104: 262a. DOI: 10.1016/J.Bpj.2012.11.1471 |
0.436 |
|
| 2012 |
Li W, Wang PY, Yan J, Li M. Impact of DNA twist accumulation on progressive helical wrapping of torsionally constrained DNA. Physical Review Letters. 109: 218102. PMID 23215616 DOI: 10.1103/Physrevlett.109.218102 |
0.42 |
|
| 2012 |
Lin J, Chen H, Dröge P, Yan J. Physical Organization of DNA by Multiple Non-Specific DNA-Binding Modes of Integration Host Factor (IHF) Plos One. 7. PMID 23166787 DOI: 10.1371/Journal.Pone.0049885 |
0.45 |
|
| 2012 |
Khan K, Karthikeyan U, Li Y, Yan J, Muniyappa K. Single-Molecule DNA Analysis Reveals That Yeast Hop1 Protein Promotes DNA Folding and Synapsis: Implications for Condensation of Meiotic Chromosomes Acs Nano. 6: 10658-10666. PMID 23121004 DOI: 10.1021/Nn3038258 |
0.475 |
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| 2012 |
Winardhi RS, Fu W, Castang S, Li Y, Dove SL, Yan J. Higher order oligomerization is required for H-NS family member MvaT to form gene-silencing nucleoprotein filament. Nucleic Acids Research. 40: 8942-52. PMID 22798496 DOI: 10.1093/Nar/Gks669 |
0.408 |
|
| 2012 |
Zhang X, Chen H, Fu H, Doyle PS, Yan J. Two distinct overstretched DNA structures revealed by single-molecule thermodynamics measurements. Proceedings of the National Academy of Sciences of the United States of America. 109: 8103-8. PMID 22532662 DOI: 10.1073/Pnas.1109824109 |
0.447 |
|
| 2012 |
Lim CJ, Whang YR, Kenney LJ, Yan J. Gene silencing H-NS paralogue StpA forms a rigid protein filament along DNA that blocks DNA accessibility. Nucleic Acids Research. 40: 3316-28. PMID 22187157 DOI: 10.1093/Nar/Gkr1247 |
0.442 |
|
| 2012 |
Chen H, Zhu X, Wang Y, Sheetz M, Nakamura F, Yan J. Differential Mechanical Stability of Filamin a Rod Segments and Domain Pair Interaction Biophysical Journal. 102: 175a. DOI: 10.1016/J.Bpj.2011.11.950 |
0.603 |
|
| 2012 |
Lin J, Droge P, Yan J. Multiple Binding Modes and DNA Organization by Non-Specific Binding of the E. Coli Nucleoid Associated Protein IHF Biophysical Journal. 102. DOI: 10.1016/J.Bpj.2011.11.423 |
0.433 |
|
| 2012 |
Le S, Chen H, Lin J, Yan J. Real Time Monitoring of DNA Bending and Unbending by E. Coli Integration Host Factor Biophysical Journal. 102. DOI: 10.1016/J.Bpj.2011.11.3280 |
0.461 |
|
| 2012 |
Fu H, Yan J. ATP Hydrolysis Dependent Dynamic Stability of RecA Nucleofilament on Double-Stranded DNA Biophysical Journal. 102. DOI: 10.1016/J.Bpj.2011.11.1559 |
0.451 |
|
| 2012 |
Zhang X, Chen H, Fu H, Patrick D, Yan J. Single-Molecule Thermodynamics of Three Distinct DNA Structural Transitions under Large Tension Biophysical Journal. 102. DOI: 10.1016/J.Bpj.2011.11.1515 |
0.445 |
|
| 2011 |
Chen H, Zhu X, Cong P, Sheetz MP, Nakamura F, Yan J. Differential mechanical stability of filamin A rod segments. Biophysical Journal. 101: 1231-7. PMID 21889461 DOI: 10.1016/J.Bpj.2011.07.028 |
0.621 |
|
| 2011 |
Fu H, Freedman BS, Lim CT, Heald R, Yan J. Atomic force microscope imaging of chromatin assembled in Xenopus laevis egg extract. Chromosoma. 120: 245-54. PMID 21369955 DOI: 10.1007/S00412-010-0307-4 |
0.336 |
|
| 2011 |
Chen H, Fu H, Zhu X, Cong P, Nakamura F, Yan J. Improved high-force magnetic tweezers for stretching and refolding of proteins and short DNA. Biophysical Journal. 100: 517-23. PMID 21244848 DOI: 10.1016/J.Bpj.2010.12.3700 |
0.449 |
|
| 2011 |
Fu H, Chen H, Zhang X, Qu Y, Marko JF, Yan J. Transition dynamics and selection of the distinct S-DNA and strand unpeeling modes of double helix overstretching. Nucleic Acids Research. 39: 3473-81. PMID 21177651 DOI: 10.1093/Nar/Gkq1278 |
0.613 |
|
| 2011 |
Walthers D, Li Y, Liu Y, Anand G, Yan J, Kenney LJ. Salmonella enterica response regulator SsrB relieves H-NS silencing by displacing H-NS bound in polymerization mode and directly activates transcription. The Journal of Biological Chemistry. 286: 1895-902. PMID 21059643 DOI: 10.1074/Jbc.M110.164962 |
0.321 |
|
| 2011 |
Fu H, Chen H, Yan J. Sequence Dependent Structural Transition of Short DNA by Tensile Force Biophysical Journal. 100. DOI: 10.1016/J.Bpj.2010.12.610 |
0.41 |
|
| 2011 |
Chen H, Zhu X, Sheetz M, Nakamura F, Yan J. Filamin a Segments Respond Force Differently Biophysical Journal. 100: 595a. DOI: 10.1016/J.Bpj.2010.12.3430 |
0.641 |
|
| 2010 |
Liu Y, Wu J, Chen H, Hew CL, Yan J. DNA condensates organized by the capsid protein VP15 in White Spot Syndrome Virus. Virology. 408: 197-203. PMID 20956009 DOI: 10.1016/J.Virol.2010.09.008 |
0.437 |
|
| 2010 |
Yan J. DNA binding by bacterial nucleoid proteins and the DNA overstretching transition. Comment on "Biophysical characterization of DNA binding from single molecule force measurements" by Mark C. Williams et al Physics of Life Reviews. 7: 342-343. PMID 20598658 DOI: 10.1016/J.Plrev.2010.06.003 |
0.461 |
|
| 2010 |
Fu H, Chen H, Marko JF, Yan J. Two distinct overstretched DNA states. Nucleic Acids Research. 38: 5594-600. PMID 20435680 DOI: 10.1093/Nar/Gkq309 |
0.639 |
|
| 2010 |
Liu Y, Chen H, Kenney LJ, Yan J. A divalent switch drives H-NS/DNA-binding conformations between stiffening and bridging modes. Genes & Development. 24: 339-44. PMID 20159954 DOI: 10.1101/Gad.1883510 |
0.404 |
|
| 2010 |
Fu H, Chen H, Yan J, Lim CT. Salt Solution Effects on Overstretching Transitions of DNA Molecules Journal of Computational and Theoretical Nanoscience. 7: 1272-1278. DOI: 10.1166/Jctn.2010.1480 |
0.36 |
|
| 2010 |
Fu W, Chen H, Li M, Yan J. Kinetics of Single DNA Compaction by Hexaammine Cobalt Chloride Journal of Computational and Theoretical Nanoscience. 7: 213-217. DOI: 10.1166/Jctn.2010.1348 |
0.416 |
|
| 2010 |
Chen H, Fu H, Zhou Z, Yan J. Non-Harmonic Dna Bending Elasticity Is Revealed By Statistics Of Dna Minicircle Shapes International Journal of Modern Physics B. 24: 5475-5485. DOI: 10.1142/S0217979210056682 |
0.433 |
|
| 2010 |
Chen H, Nakamura F, Fu H, Cong P, Sheetz M, Yan J. Unfolding and Refolding Dynamics of Filamin a Protein under Constant Forces Biophysical Journal. 98: 753a. DOI: 10.1016/J.Bpj.2009.12.4130 |
0.616 |
|
| 2010 |
Walthers D, Liu Y, Chen H, Yan J, Kenney LJ. The Role of SsrB And H-NS in Transcription Activation and Silencing/Anti-Silencing During Salmonella Pathogenesis Biophysical Journal. 98: 206a. DOI: 10.1016/J.Bpj.2009.12.1102 |
0.347 |
|
| 2010 |
Liu Y, Chen H, Kenney LJ, Yan J. Biophysical Studies of H-NS Binding to DNA Biophysical Journal. 98: 206a. DOI: 10.1016/J.Bpj.2009.12.1101 |
0.427 |
|
| 2009 |
Chen H, Liu Y, Zhou Z, Hu L, Ou-Yang ZC, Yan J. Temperature dependence of circular DNA topological states. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 79: 041926. PMID 19518275 DOI: 10.1103/Physreve.79.041926 |
0.418 |
|
| 2009 |
Liu Y, Walthers D, Kenney LJ, Yan J. The DNA Bridging Protein H-NS and the SsrB Transcription Factor Counteract One Another to Silence and Activate Pathogenicity Island Genes in Salmonella Biophysical Journal. 96: 64a. DOI: 10.1016/J.Bpj.2008.12.227 |
0.337 |
|
| 2009 |
Yan J. Defect Excitation In Sharply Bent Dna And Its Micromechanical Consequences Biophysical Journal. 96. DOI: 10.1016/J.Bpj.2008.12.1735 |
0.406 |
|
| 2008 |
Lubrich D, Lin J, Yan J. A contractile DNA machine. Angewandte Chemie. 47: 7026-7028. PMID 18677787 DOI: 10.1002/Anie.200800476 |
0.345 |
|
| 2008 |
Chen H, Yan J. Effects of kink and flexible hinge defects on mechanical responses of short double-stranded DNA molecules. Physical Review E. 77: 41907. PMID 18517656 DOI: 10.1103/Physreve.77.041907 |
0.429 |
|
| 2007 |
Ranjith P, Yan J, Marko JF. Nucleosome hopping and sliding kinetics determined from dynamics of single chromatin fibers in Xenopus egg extracts. Proceedings of the National Academy of Sciences of the United States of America. 104: 13649-54. PMID 17698962 DOI: 10.1073/Pnas.0701459104 |
0.613 |
|
| 2007 |
Yan J, Maresca TJ, Skoko D, Adams CD, Xiao B, Christensen MO, Heald R, Marko JF. Micromanipulation studies of chromatin fibers in Xenopus egg extracts reveal ATP-dependent chromatin assembly dynamics. Molecular Biology of the Cell. 18: 464-74. PMID 17108322 DOI: 10.1091/Mbc.E06-09-0800 |
0.784 |
|
| 2006 |
Bao Q, Chen H, Liu Y, Yan J, Dröge P, Davey CA. A divalent metal-mediated switch controlling protein-induced DNA bending. Journal of Molecular Biology. 367: 731-40. PMID 17276457 DOI: 10.1016/J.Jmb.2006.09.082 |
0.419 |
|
| 2006 |
Fu W, Wang X, Zhang X, Ran S, Yan J, Li M. Compaction Dynamics of Single DNA Molecules under Tension Journal of the American Chemical Society. 128: 15040-15041. PMID 17117826 DOI: 10.1021/Ja064305A |
0.498 |
|
| 2006 |
Skoko D, Yoo D, Bai H, Schnurr B, Yan J, McLeod SM, Marko JF, Johnson RC. Mechanism of chromosome compaction and looping by the Escherichia coli nucleoid protein Fis. Journal of Molecular Biology. 364: 777-98. PMID 17045294 DOI: 10.1016/J.Jmb.2006.09.043 |
0.795 |
|
| 2005 |
Skoko D, Yan J, Johnson RC, Marko JF. Low-force DNA condensation and discontinuous high-force decondensation reveal a loop-stabilizing function of the protein Fis. Physical Review Letters. 95: 208101. PMID 16384101 DOI: 10.1103/Physrevlett.95.208101 |
0.811 |
|
| 2005 |
Yan J, Kawamura R, Marko JF. Statistics of loop formation along double helix DNAs. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 71: 061905. PMID 16089763 DOI: 10.1103/Physreve.71.061905 |
0.704 |
|
| 2005 |
Ben-Yehuda S, Fujita M, Liu XS, Gorbatyuk B, Skoko D, Yan J, Marko JF, Liu JS, Eichenberger P, Rudner DZ, Losick R. Defining a centromere-like element in Bacillus subtilis by Identifying the binding sites for the chromosome-anchoring protein RacA. Molecular Cell. 17: 773-82. PMID 15780934 DOI: 10.1016/J.Molcel.2005.02.023 |
0.783 |
|
| 2005 |
Yan J, Kawamura R, Marko JF. Erratum: Statistics of loop formation along double helix DNAs [Phys. Rev. E71, 061905 (2005)] Physical Review E. 72. DOI: 10.1103/Physreve.72.059901 |
0.688 |
|
| 2004 |
Yan J, Marko JF. Localized single-stranded bubble mechanism for cyclization of short double helix DNA. Physical Review Letters. 93: 108108. PMID 15447460 DOI: 10.1103/Physrevlett.93.108108 |
0.631 |
|
| 2004 |
Cocco S, Yan J, Léger JF, Chatenay D, Marko JF. Overstretching and force-driven strand separation of double-helix DNA. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 70: 011910. PMID 15324091 DOI: 10.1103/Physreve.70.011910 |
0.65 |
|
| 2004 |
Yan J, Skoko D, Marko JF. Near-field-magnetic-tweezer manipulation of single DNA molecules. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 70: 011905. PMID 15324086 DOI: 10.1103/Physreve.70.011905 |
0.802 |
|
| 2003 |
Yan J, Marko JF. Effects of DNA-distorting proteins on DNA elastic response. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 68: 011905. PMID 12935174 DOI: 10.1103/Physreve.68.011905 |
0.643 |
|
| 2003 |
Yan J, Marko JF. Publisher’s Note: Effects of DNA-distorting proteins on DNA elastic response [Phys. Rev. E68, 011905 (2003)] Physical Review E. 68. DOI: 10.1103/Physreve.68.039901 |
0.593 |
|
| 2001 |
Yan J, Magnasco MO, Marko JF. Kinetic proofreading can explain the supression of supercoiling of circular DNA molecules by type-II topoisomerases. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 63: 031909. PMID 11308680 DOI: 10.1103/Physreve.63.031909 |
0.594 |
|
| 1999 |
Yan J, Magnasco MO, Marko JF. A kinetic proofreading mechanism for disentanglement of DNA by topoisomerases. Nature. 401: 932-5. PMID 10553912 DOI: 10.1038/44872 |
0.601 |
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