| Year | Citation | Score | |||
|---|---|---|---|---|---|
| 2020 | Pathiraja D, Chun Y, Cho JH, Min B, Lee S, Park H, Byun J, Choi IG. Isolation and molecular characterization of novel monomeric fungal subtilisin inhibitor from a plant pathogenic fungus, . Applied and Environmental Microbiology. PMID 32887713 DOI: 10.1128/Aem.01818-20 | 0.348 | |||
| 2020 | Lee CW, Lee S, Jeong CS, Hwang J, Chang JH, Choi IG, Kim TD, Park H, Kim HY, Lee JH. Structural insights into the psychrophilic germinal protease PaGPR and its autoinhibitory loop. Journal of Microbiology (Seoul, Korea). 58: 772-779. PMID 32870483 DOI: 10.1007/S12275-020-0292-0 | 0.37 | |||
| 2020 | Park H, Choi IG. Genomic and transcriptomic perspectives on mycoremediation of polycyclic aromatic hydrocarbons. Applied Microbiology and Biotechnology. PMID 32572576 DOI: 10.1007/S00253-020-10746-1 | 0.337 | |||
| 2019 | Min B, Choi IG. Practical Guide for Fungal Gene Prediction from Genome Assembly and RNA-Seq Reads by FunGAP. Methods in Molecular Biology (Clifton, N.J.). 1962: 53-64. PMID 31020554 DOI: 10.1007/978-1-4939-9173-0_4 | 0.318 | |||
| 2019 | Kang H, Park B, Bolo NR, Pathiraja D, Park S, Cha M, Choi IG, Chang IS. Gene-centric metagenome analysis reveals gene clusters for carbon monoxide conversion and validates isolation of a clostridial acetogen for C2 chemical production. Biotechnology Journal. e1800471. PMID 30802355 DOI: 10.1002/Biot.201800471 | 0.332 | |||
| 2018 | Jeong JJ, Sang MK, Lee DW, Choi IG, Kim KD. Chryseobacterium phosphatilyticum sp. nov., a phosphate-solubilizing endophyte isolated from cucumber (Cucumis sativus L.) root. International Journal of Systematic and Evolutionary Microbiology. PMID 30372407 DOI: 10.1099/Ijsem.0.003091 | 0.31 | |||
| 2018 | Grum-Grzhimaylo AA, Falkoski DL, van den Heuvel J, Valero-Jiménez CA, Min B, Choi IG, Lipzen A, Daum CG, Aanen DK, Tsang A, Henrissat B, Bilanenko EN, de Vries RP, van Kan JAL, Grigoriev IV, et al. The obligate alkalophilic soda-lake fungus Sodiomyces alkalinus has shifted to a protein diet. Molecular Ecology. PMID 30368956 DOI: 10.1111/Mec.14912 | 0.341 | |||
| 2018 | Jeong JJ, Lee YJ, Pathiraja D, Park B, Choi IG, Kim KD. Draft Genome Sequences of Chryseobacterium lactis NCTC11390 Isolated from Milk, Chryseobacterium oncorhynchi 701B-08 from Rainbow Trout, and Chryseobacterium viscerum 687B-08 from Diseased Fish. Genome Announcements. 6. PMID 29954917 DOI: 10.1128/Genomea.00628-18 | 0.351 | |||
| 2018 | Jeong JJ, Sang MK, Pathiraja D, Park B, Choi IG, Kim KD. Draft Genome Sequence of Phosphate-Solubilizing Chryseobacterium sp. Strain ISE14, a Biocontrol and Plant Growth-Promoting Rhizobacterium Isolated from Cucumber. Genome Announcements. 6. PMID 29954909 DOI: 10.1128/Genomea.00612-18 | 0.317 | |||
| 2018 | Jeong JJ, Moon HJ, Pathiraja D, Park B, Choi IG, Kim KD. Draft Genome Sequences of Bacillus megaterium KU143, Microbacterium testaceum KU313, and Pseudomonas protegens AS15, Isolated from Stored Rice Grains. Genome Announcements. 6. PMID 29853508 DOI: 10.1128/Genomea.00468-18 | 0.341 | |||
| 2018 | Yu S, Choi I, Yun EJ, Kim KH. High substrate specificity of 3,6-anhydro- l -galactose dehydrogenase indicates its essentiality in the agar catabolism of a marine bacterium Process Biochemistry. 64: 130-135. DOI: 10.1016/J.Procbio.2017.09.016 | 0.327 | |||
| 2017 | Ko HJ, Park HJ, Lee SH, Jeong H, Bae JH, Sung BH, Choi IG, Sohn JH. Draft Genome Sequence of an Acid-Tolerant Yeast, Candida zemplinina NP2, a Potential Producer of Organic Acids. Genome Announcements. 5. PMID 28963218 DOI: 10.1128/Genomea.01052-17 | 0.315 | |||
| 2017 | Lee S, Kim KH, Kim HY, Choi IG. Crystal structure analysis of 3,6-anhydro-l-Galactonate cycloisomerase suggests emergence of novel substrate specificity in the enolase superfamily. Biochemical and Biophysical Research Communications. PMID 28716734 DOI: 10.1016/J.Bbrc.2017.07.080 | 0.386 | |||
| 2017 | Park B, Baek MJ, Min B, Choi IG. Prokaryotic Contig Annotation Pipeline Server: Web Application for a Prokaryotic Genome Annotation Pipeline Based on the Shiny App Package. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. PMID 28632399 DOI: 10.1089/Cmb.2017.0066 | 0.311 | |||
| 2017 | Min B, Grigoriev IV, Choi IG. FunGAP: Fungal Genome Annotation Pipeline Using Evidence-based Gene Model Evaluation. Bioinformatics (Oxford, England). PMID 28582481 DOI: 10.1093/Bioinformatics/Btx353 | 0.341 | |||
| 2017 | Min B, Park JH, Park H, Shin HD, Choi IG. Genome Analysis of a Zygomycete Fungus Choanephora cucurbitarum Elucidates Necrotrophic Features Including Bacterial Genes Related to Plant Colonization. Scientific Reports. 7: 40432. PMID 28091548 DOI: 10.1038/Srep40432 | 0.356 | |||
| 2016 | Jeong JJ, Park B, Oh JY, Mannaa M, Kim YJ, Hong JK, Choi IG, Kim KD. Draft Genome Sequences of Chryseobacterium artocarpi UTM-3T and Chryseobacterium contaminans C26T, Isolated from Rhizospheres, and Chryseobacterium arthrosphaerae CC-VM-7T, Isolated from the Feces of a Pill Millipede. Genome Announcements. 4. PMID 27795281 DOI: 10.1128/Genomea.01168-16 | 0.33 | |||
| 2016 | Park H, Park B, Kim HJ, Park W, Choi IG. Draft Genome Sequences of Two Ureolytic Bacteria Isolated from Concrete Block Waste. Genome Announcements. 4. PMID 27491992 DOI: 10.1128/Genomea.00762-16 | 0.33 | |||
| 2016 | Jeong JJ, Park BH, Park H, Choi IG, Kim KD. Draft Genome Sequence of Chryseobacterium sp. Strain GSE06, a Biocontrol Endophytic Bacterium Isolated from Cucumber (Cucumis sativus). Genome Announcements. 4. PMID 27313310 DOI: 10.1128/Genomea.00577-16 | 0.349 | |||
| 2016 | Jeong JJ, Park H, Park BH, Mannaa M, Sang MK, Choi IG, Kim KD. Draft Genome Sequence of a Biocontrol Rhizobacterium, Chryseobacterium kwangjuense Strain KJ1R5, Isolated from Pepper (Capsicum annuum). Genome Announcements. 4. PMID 27103726 DOI: 10.1128/Genomea.00301-16 | 0.341 | |||
| 2015 | Lee S, Park EH, Ko HJ, Bang WG, Kim HY, Kim KH, Choi IG. Crystal structure analysis of a bacterial aryl acylamidase belonging to the Amidase Signature enzyme family. Biochemical and Biophysical Research Communications. PMID 26454172 DOI: 10.1016/J.Bbrc.2015.09.177 | 0.379 | |||
| 2015 | Kim IJ, Nam KH, Yun EJ, Kim S, Youn HJ, Lee HJ, Choi IG, Kim KH. Optimization of synergism of a recombinant auxiliary activity 9 from Chaetomium globosum with cellulase in cellulose hydrolysis. Applied Microbiology and Biotechnology. PMID 25936375 DOI: 10.1007/S00253-015-6592-3 | 0.3 | |||
| 2015 | Oh Y, Kong W, Jang K, Shin P, Kim E, Oh Mj, Choi I. Selection of parental monokaryons from Korean Hypsizigus marmoreus by protoplast regeneration Journal of Mushroom. 13: 270-273. DOI: 10.14480/Jm.2015.13.3.270 | 0.307 | |||
| 2014 | Nasution O, Lee J, Srinivasa K, Choi I, Lee YM, Kim E, Choi W, Kim W. Loss of Dfg5 glycosylphosphatidylinositol-anchored membrane protein confers enhanced heat tolerance in Saccharomyces cerevisiae. Environmental Microbiology. PMID 25297926 DOI: 10.1111/1462-2920.12649 | 0.302 | |||
| 2014 | Kim IJ, Lee HJ, Choi IG, Kim KH. Synergistic proteins for the enhanced enzymatic hydrolysis of cellulose by cellulase. Applied Microbiology and Biotechnology. 98: 8469-80. PMID 25129610 DOI: 10.1007/S00253-014-6001-3 | 0.405 | |||
| 2014 | Ohm RA, Riley R, Salamov A, Min B, Choi IG, Grigoriev IV. Genomics of wood-degrading fungi. Fungal Genetics and Biology : Fg & B. 72: 82-90. PMID 24853079 DOI: 10.1016/J.Fgb.2014.05.001 | 0.354 | |||
| 2012 | Kim SJ, Shin SC, Hong SG, Lee YM, Choi IG, Park H. Genome sequence of a novel member of the genus Psychrobacter isolated from Antarctic soil. Journal of Bacteriology. 194: 2403. PMID 22493207 DOI: 10.1128/Jb.00234-12 | 0.318 | |||
| 2012 | Kim SJ, Shin SC, Hong SG, Lee YM, Lee H, Lee J, Choi IG, Park H. Genome sequence of Janthinobacterium sp. strain PAMC 25724, isolated from alpine glacier cryoconite. Journal of Bacteriology. 194: 2096. PMID 22461541 DOI: 10.1128/Jb.00096-12 | 0.334 | |||
| 2012 | Ko HJ, Park E, Song J, Yang TH, Lee HJ, Kim KH, Choi IG. Functional cell surface display and controlled secretion of diverse Agarolytic enzymes by Escherichia coli with a novel ligation-independent cloning vector based on the autotransporter YfaL. Applied and Environmental Microbiology. 78: 3051-8. PMID 22344647 DOI: 10.1128/Aem.07004-11 | 0.362 | |||
| 2012 | Kim HT, Chung JH, Wang D, Lee J, Woo HC, Choi IG, Kim KH. Depolymerization of alginate into a monomeric sugar acid using Alg17C, an exo-oligoalginate lyase cloned from Saccharophagus degradans 2-40. Applied Microbiology and Biotechnology. 93: 2233-9. PMID 22281843 DOI: 10.1007/S00253-012-3882-X | 0.34 | |||
| 2011 | Ha SC, Lee S, Lee J, Kim HT, Ko HJ, Kim KH, Choi IG. Crystal structure of a key enzyme in the agarolytic pathway, α-neoagarobiose hydrolase from Saccharophagus degradans 2-40. Biochemical and Biophysical Research Communications. 412: 238-44. PMID 21810409 DOI: 10.1016/J.Bbrc.2011.07.073 | 0.533 | |||
| 2009 | Lee S, Lee JY, Ha SC, Jung J, Shin DH, Kim KH, Choi IG. Crystallization and preliminary X-ray analysis of neoagarobiose hydrolase from Saccharophagus degradans 2-40. Acta Crystallographica. Section F, Structural Biology and Crystallization Communications. 65: 1299-301. PMID 20054134 DOI: 10.1107/S174430910904603X | 0.418 | |||
| 2009 | Ko JK, Jung MW, Kim KH, Choi IG. Optimal production of a novel endo-acting beta-1,4-xylanase cloned from Saccharophagus degradans 2-40 into Escherichia coli BL21(DE3). New Biotechnology. 26: 157-64. PMID 19646553 DOI: 10.1016/J.Nbt.2009.07.009 | 0.3 | |||
| 2008 | Hwang KC, Kim JY, Chang W, Kim DS, Lim S, Kang SM, Song BW, Ha HY, Huh YJ, Choi IG, Hwang DY, Song H, Jang Y, Chung N, Kim SH, et al. Chemicals that modulate stem cell differentiation. Proceedings of the National Academy of Sciences of the United States of America. 105: 7467-71. PMID 18480249 DOI: 10.1073/pnas.0802825105 | 0.586 | |||
| 2008 | Kim ES, Lee HJ, Bang W, Choi I, Kim K. A novel cellulase activity enhancing protein from bacillus subtilis, a functional homolog of a plant expansin Journal of Biotechnology. 136. DOI: 10.1016/J.Jbiotec.2008.07.986 | 0.34 | |||
| 2008 | Lee HJ, Kim ES, Lee SY, Ko HJ, Bang W, Kim KH, Choi I. Cellulase activity enhancing protein (CAEP) from Hahella chejuensis for pretreatment of lignocellulosic biomass Journal of Biotechnology. 136. DOI: 10.1016/J.Jbiotec.2008.07.1985 | 0.348 | |||
| 2007 | Shin DH, Hou J, Chandonia JM, Das D, Choi IG, Kim R, Kim SH. Structure-based inference of molecular functions of proteins of unknown function from Berkeley Structural Genomics Center. Journal of Structural and Functional Genomics. 8: 99-105. PMID 17764033 DOI: 10.1007/S10969-007-9025-4 | 0.767 | |||
| 2007 | Choi IG, Kim SH. Global extent of horizontal gene transfer. Proceedings of the National Academy of Sciences of the United States of America. 104: 4489-94. PMID 17360551 DOI: 10.1073/pnas.0611557104 | 0.642 | |||
| 2006 | Choi IG, Kim SH. Evolution of protein structural classes and protein sequence families. Proceedings of the National Academy of Sciences of the United States of America. 103: 14056-61. PMID 16959887 DOI: 10.1073/pnas.0606239103 | 0.689 | |||
| 2005 | Kim SH, Shin DH, Liu J, Oganesyan V, Chen S, Xu QS, Kim JS, Das D, Schulze-Gahmen U, Holbrook SR, Holbrook EL, Martinez BA, Oganesyan N, DeGiovanni A, Lou Y, ... ... Choi IG, et al. Structural genomics of minimal organisms and protein fold space. Journal of Structural and Functional Genomics. 6: 63-70. PMID 16211501 DOI: 10.1007/S10969-005-2651-9 | 0.768 | |||
| 2005 | Sims GE, Choi IG, Kim SH. Protein conformational space in higher order phi-Psi maps. Proceedings of the National Academy of Sciences of the United States of America. 102: 618-21. PMID 15640351 DOI: 10.1073/Pnas.0408746102 | 0.712 | |||
| 2004 | Shin DH, Choi IG, Busso D, Jancarik J, Yokota H, Kim R, Kim SH. Structure of OsmC from Escherichia coli: a salt-shock-induced protein. Acta Crystallographica. Section D, Biological Crystallography. 60: 903-11. PMID 15103136 DOI: 10.1107/S0907444904005013 | 0.68 | |||
| 2004 | Choi IG, Kwon J, Kim SH. Local feature frequency profile: a method to measure structural similarity in proteins. Proceedings of the National Academy of Sciences of the United States of America. 101: 3797-802. PMID 14985506 DOI: 10.1073/Pnas.0308656100 | 0.699 | |||
| 2003 | Kim SH, Shin DH, Choi IG, Schulze-Gahmen U, Chen S, Kim R. Structure-based functional inference in structural genomics. Journal of Structural and Functional Genomics. 4: 129-35. PMID 14649297 DOI: 10.1023/A:1026200610644 | 0.722 | |||
| 2003 | Choi IG, Shin DH, Brandsen J, Jancarik J, Busso D, Yokota H, Kim R, Kim SH. Crystal structure of a stress inducible protein from Mycoplasma pneumoniae at 2.85 A resolution. Journal of Structural and Functional Genomics. 4: 31-4. PMID 12943365 DOI: 10.1023/A:1024625122089 | 0.657 | |||
| 2002 | Grigoriev IV, Choi IG. Target selection for structural genomics: a single genome approach. Omics : a Journal of Integrative Biology. 6: 349-62. PMID 12626094 DOI: 10.1089/153623102321112773 | 0.415 | |||
| 2002 | Chandonia J, Konerding DE, Allen DG, Choi I, Yokota H, Brenner SE. Computational Structural Genomics of a Complete Minimal Organism Genome Informatics. 13: 390-391. DOI: 10.11234/Gi1990.13.390 | 0.485 | |||
| 2000 | Du X, Choi IG, Kim R, Wang W, Jancarik J, Yokota H, Kim SH. Crystal structure of an intracellular protease from Pyrococcus horikoshii at 2-A resolution. Proceedings of the National Academy of Sciences of the United States of America. 97: 14079-84. PMID 11114201 DOI: 10.1073/Pnas.260503597 | 0.553 | |||
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