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Shintaro Aibara - Publications

Affiliations: 
2016- Stockholm University, Stockholm, Stockholms län, Sweden 
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29 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Singh V, Itoh Y, Del'Olio S, Hassan A, Naschberger A, Flygaard RK, Nobe Y, Izumikawa K, Aibara S, Andréll J, Whitford PC, Barrientos A, Taoka M, Amunts A. Structure of mitoribosome reveals mechanism of mRNA binding, tRNA interactions with L1 stalk, roles of cofactors and rRNA modifications. Biorxiv : the Preprint Server For Biology. PMID 37503168 DOI: 10.1101/2023.05.24.542018  0.785
2021 Aibara S, Dienemann C, Cramer P. Structure of an inactive RNA polymerase II dimer. Nucleic Acids Research. 49: 10747-10755. PMID 34530439 DOI: 10.1093/nar/gkab783  0.302
2021 Fianu I, Dienemann C, Aibara S, Schilbach S, Cramer P. Cryo-EM structure of mammalian RNA polymerase II in complex with human RPAP2. Communications Biology. 4: 606. PMID 34021257 DOI: 10.1038/s42003-021-02088-z  0.349
2021 Sighel D, Notarangelo M, Aibara S, Re A, Ricci G, Guida M, Soldano A, Adami V, Ambrosini C, Broso F, Rosatti EF, Longhi S, Buccarelli M, D'Alessandris QG, Giannetti S, et al. Inhibition of mitochondrial translation suppresses glioblastoma stem cell growth. Cell Reports. 35: 109024. PMID 33910005 DOI: 10.1016/j.celrep.2021.109024  0.644
2021 Rengachari S, Schilbach S, Aibara S, Dienemann C, Cramer P. Structure of human Mediator-RNA polymerase II pre-initiation complex. Nature. PMID 33902108 DOI: 10.1038/s41586-021-03555-7  0.308
2021 Tobiasson V, Gahura O, Aibara S, Baradaran R, Zíková A, Amunts A. Interconnected assembly factors regulate the biogenesis of mitoribosomal large subunit. The Embo Journal. e106292. PMID 33576519 DOI: 10.15252/embj.2020106292  0.75
2020 Forsberg BO, Aibara S, Howard RJ, Mortezaei N, Lindahl E. Arrangement and symmetry of the fungal E3BP-containing core of the pyruvate dehydrogenase complex. Nature Communications. 11: 4667. PMID 32938938 DOI: 10.1038/S41467-020-18401-Z  0.451
2020 Aibara S, Singh V, Modelska A, Amunts A. Structural basis of mitochondrial translation. Elife. 9. PMID 32812867 DOI: 10.7554/Elife.58362  0.747
2020 Aibara S, Singh V, Modelska A, Amunts A. Author response: Structural basis of mitochondrial translation Elife. DOI: 10.7554/Elife.58362.Sa2  0.687
2019 Bigalke JM, Aibara S, Roth R, Dahl G, Gordon E, Dorbéus S, Amunts A, Sandmark J. Cryo-EM structure of the activated RET signaling complex reveals the importance of its cysteine-rich domain. Science Advances. 5: eaau4202. PMID 31392261 DOI: 10.1126/Sciadv.Aau4202  0.671
2018 Aibara S, Andréll J, Singh V, Amunts A. Rapid Isolation of the Mitoribosome from HEK Cells. Journal of Visualized Experiments : Jove. PMID 30346389 DOI: 10.3791/57877  0.704
2018 Perez Boerema A, Aibara S, Paul B, Tobiasson V, Kimanius D, Forsberg BO, Wallden K, Lindahl E, Amunts A. Publisher Correction: Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor. Nature Plants. PMID 30038411 DOI: 10.1038/S41477-018-0203-0  0.712
2018 Boerema AP, Aibara S, Paul B, Tobiasson V, Kimanius D, Forsberg BO, Wallden K, Lindahl E, Amunts A. Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor. Nature Plants. 4: 212-217. PMID 29610536 DOI: 10.2210/Pdb6Eri/Pdb  0.741
2017 Forsberg BO, Aibara S, Kimanius D, Paul B, Lindahl E, Amunts A. Cryo-EM reconstruction of the chlororibosome to 3.2 Å resolution within 24 h. Iucrj. 4: 723-727. PMID 29123673 DOI: 10.1107/S205225251701226X  0.61
2017 Rorbach J, Aibara S, Amunts A. Ribosome origami. Nature Structural & Molecular Biology. 24: 879-881. PMID 29112687 DOI: 10.1038/nsmb.3497  0.663
2017 Matzov D, Aibara S, Basu A, Zimmerman E, Bashan A, Yap MF, Amunts A, Yonath AE. The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus. Nature Communications. 8: 723. PMID 28959035 DOI: 10.1038/S41467-017-00753-8  0.741
2017 Brown A, Rathore S, Kimanius D, Aibara S, Bai XC, Rorbach J, Amunts A, Ramakrishnan V. Structures of the human mitochondrial ribosome in native states of assembly. Nature Structural & Molecular Biology. PMID 28892042 DOI: 10.1038/Nsmb.3464  0.774
2017 Gordon JM, Aibara S, Stewart M. Structure of the Sac3 RNA-binding M-region in the Saccharomyces cerevisiae TREX-2 complex. Nucleic Acids Research. PMID 28334829 DOI: 10.1093/Nar/Gkx158  0.612
2017 Aibara S, Gordon JM, Riesterer AS, McLaughlin SH, Stewart M. Structural basis for the dimerization of Nab2 generated by RNA binding provides insight into its contribution to both poly(A) tail length determination and transcript compaction in Saccharomyces cerevisiae. Nucleic Acids Research. 45: 1529-1538. PMID 28180315 DOI: 10.1093/Nar/Gkw1224  0.637
2016 Aibara S, Gordon JM, Riesterer AS, McLaughlin SH, Stewart M. Structural basis for the dimerization of Nab2 generated by RNA binding provides insight into its contribution to both poly(A) tail length determination and transcript compaction in Saccharomyces cerevisiae. Nucleic Acids Research. PMID 27932457 DOI: 10.1093/nar/gkw1224  0.601
2016 Wiedmann MM, Tan YS, Wu Y, Aibara S, Xu W, Sore HF, Verma CS, Itzhaki L, Stewart M, Brenton JD, Spring DR. Development of Cell-Permeable, Non-Helical Constrained Peptides to Target a Key Protein-Protein Interaction in Ovarian Cancer. Angewandte Chemie (International Ed. in English). PMID 27918136 DOI: 10.1002/Anie.201609427  0.567
2016 Li Q, Chang L, Aibara S, Yang J, Zhang Z, Barford D. WD40 domain of Apc1 is critical for the coactivator-induced allosteric transition that stimulates APC/C catalytic activity. Proceedings of the National Academy of Sciences of the United States of America. PMID 27601667 DOI: 10.1073/Pnas.1607147113  0.336
2016 Aibara S, Bai XC, Stewart M. The Sac3 TPR-like region in the Saccharomyces cerevisiae TREX-2 complex is more extensive but independent of the CID region. Journal of Structural Biology. PMID 27422657 DOI: 10.1016/J.Jsb.2016.07.007  0.594
2016 Wiedmann MM, Aibara S, Spring DR, Stewart M, Brenton JD. Structural and calorimetric studies demonstrate that the Hepatocyte Nuclear Factor1β (HNF1β) transcription factor is imported into the nucleus via a monopartite NLS sequence. Journal of Structural Biology. PMID 27346421 DOI: 10.1016/J.Jsb.2016.06.018  0.599
2015 Aibara S, Valkov E, Lamers MH, Dimitrova L, Hurt E, Stewart M. Structural characterization of the principal mRNA-export factor Mex67-Mtr2 from Chaetomium thermophilum. Acta Crystallographica. Section F, Structural Biology Communications. 71: 876-88. PMID 26144233 DOI: 10.1107/S2053230X15008766  0.637
2015 Dimitrova L, Valkov E, Aibara S, Flemming D, McLaughlin SH, Hurt E, Stewart M. Structural Characterization of the Chaetomium thermophilum TREX-2 Complex and its Interaction with the mRNA Nuclear Export Factor Mex67:Mtr2. Structure (London, England : 1993). PMID 26051714 DOI: 10.1016/J.Str.2015.05.002  0.642
2015 Aibara S, Katahira J, Valkov E, Stewart M. The principal mRNA nuclear export factor NXF1:NXT1 forms a symmetric binding platform that facilitates export of retroviral CTE-RNA. Nucleic Acids Research. 43: 1883-93. PMID 25628361 DOI: 10.1093/Nar/Gkv032  0.631
2015 Aibara S, Valkov E, Lamers M, Stewart M. Domain organization within the nuclear export factor Mex67:Mtr2 generates an extended mRNA binding surface. Nucleic Acids Research. 43: 1927-36. PMID 25618852 DOI: 10.1093/Nar/Gkv030  0.608
2015 Aibara S, Valkov E, Lamers MH, Dimitrova L, Hurt E, Stewart M. Structural characterization of the principal mRNA-export factor Mex67-Mtr2 from Chaetomium thermophilum Acta Crystallographica Section:F Structural Biology Communications. 71: 876-888. DOI: 10.1107/S2053230X15008766  0.567
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